Wall clock time and date at job start Mon Mar 30 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.36834 * 125.03208 * 2 1 4 4 H 0.97006 * 125.05938 * 359.97438 * 3 2 1 5 5 C 1.37687 * 109.87389 * 179.97438 * 3 2 1 6 6 C 1.39128 * 133.50472 * 180.29902 * 5 3 2 7 7 C 1.37751 * 119.77246 * 180.15607 * 6 5 3 8 8 C 1.50700 * 119.66231 * 179.77341 * 7 6 5 9 9 H 1.09000 * 109.46815 * 339.71693 * 8 7 6 10 10 N 1.46903 * 109.46851 * 219.72298 * 8 7 6 11 11 C 1.50694 * 109.47443 * 99.72096 * 8 7 6 12 12 H 1.07997 * 120.00030 * 5.59629 * 11 8 7 13 13 C 1.37876 * 120.00013 * 185.58948 * 11 8 7 14 14 N 1.31518 * 119.99930 * 194.79315 * 13 11 8 15 15 Si 1.86796 * 120.00186 * 14.79885 * 13 11 8 16 16 H 1.48494 * 109.47518 * 179.97438 * 15 13 11 17 17 H 1.48507 * 109.47148 * 59.99455 * 15 13 11 18 18 H 1.48504 * 109.47193 * 300.00014 * 15 13 11 19 19 C 1.38830 * 120.66947 * 359.48472 * 7 6 5 20 20 C 1.36631 * 120.52853 * 0.28863 * 19 7 6 21 21 C 1.39631 * 119.75965 * 359.96615 * 20 19 7 22 22 C 1.34233 * 125.03843 * 179.97438 * 2 1 3 23 23 C 1.50700 * 126.50105 * 0.02562 * 22 2 1 24 24 H 1.09006 * 109.47026 * 89.98143 * 1 2 3 25 25 H 1.09004 * 109.46864 * 209.96861 * 1 2 3 26 26 H 1.08994 * 109.47464 * 329.97028 * 1 2 3 27 27 H 1.07993 * 120.11246 * 359.89875 * 6 5 3 28 28 H 1.00897 * 111.00140 * 179.02545 * 10 8 7 29 29 H 1.00910 * 110.99524 * 302.97733 * 10 8 7 30 30 H 0.96997 * 120.00389 * 354.90404 * 14 13 11 31 31 H 1.07996 * 119.73465 * 180.25362 * 19 7 6 32 32 H 1.07993 * 120.11779 * 179.97438 * 20 19 7 33 33 H 1.08996 * 109.47536 * 270.00114 * 23 22 2 34 34 H 1.09008 * 109.47169 * 29.99990 * 23 22 2 35 35 H 1.08998 * 109.47266 * 149.99853 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1204 0.0000 4 1 1.9622 2.0325 -0.0004 5 6 3.6215 0.7604 0.0006 6 6 4.8098 1.4840 0.0061 7 6 6.0159 0.8185 0.0017 8 6 7.3015 1.6047 0.0026 9 1 7.1080 2.6179 -0.3497 10 7 8.2736 0.9546 -0.8865 11 6 7.8575 1.6571 1.4022 12 1 7.3828 1.0955 2.1932 13 6 8.9724 2.4217 1.6730 14 7 9.6298 2.2501 2.7990 15 14 9.5489 3.7016 0.4406 16 1 10.7591 4.3840 0.9650 17 1 8.4721 4.7011 0.2245 18 1 9.8736 3.0376 -0.8475 19 6 6.0590 -0.5692 0.0026 20 6 4.9042 -1.2994 0.0019 21 6 3.6706 -0.6454 0.0010 22 6 2.2777 -1.0991 0.0005 23 6 1.8005 -2.5285 0.0006 24 1 -0.3633 0.0003 -1.0277 25 1 -0.3633 -0.8903 0.5134 26 1 -0.3634 0.8896 0.5143 27 1 4.7867 2.5636 0.0096 28 1 9.1394 1.4718 -0.9156 29 1 8.4333 -0.0025 -0.6095 30 1 9.2895 1.6392 3.4711 31 1 7.0130 -1.0754 0.0033 32 1 4.9455 -2.3786 0.0022 33 1 1.6850 -2.8730 1.0282 34 1 0.8414 -2.5914 -0.5136 35 1 2.5298 -3.1551 -0.5129 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261066989.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:30 Heat of formation + Delta-G solvation = 41.029184 kcal Electronic energy + Delta-G solvation = -16990.061131 eV Core-core repulsion = 14373.471900 eV Total energy + Delta-G solvation = -2616.589231 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.92191 -37.34250 -34.29044 -32.92868 -31.82046 -30.28583 -29.62010 -27.39148 -26.16050 -24.99599 -22.09692 -21.61419 -19.60166 -18.72275 -17.71231 -16.78947 -15.80557 -15.52488 -14.73117 -13.94081 -13.91766 -13.35990 -13.25392 -13.05179 -12.90179 -12.82230 -12.57979 -12.30662 -12.27679 -12.10526 -11.67436 -11.09394 -10.78005 -10.71507 -10.47472 -10.11523 -9.88944 -9.29322 -8.95858 -8.48497 -7.63429 -7.47826 -7.08251 -6.44625 -4.22304 1.68228 2.28060 2.98027 3.28742 3.36341 3.41021 3.53218 4.36523 4.55804 4.84436 5.08966 5.17547 5.30821 5.32534 5.40422 5.47639 5.67782 5.73610 5.83119 5.88585 6.04384 6.05034 6.12643 6.24037 6.36494 6.47016 6.70344 6.83184 7.12021 7.22641 7.25225 7.54900 7.72847 7.84739 7.91784 8.23146 8.41088 8.54091 8.85140 9.50132 10.82539 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.039790 B = 0.005590 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.525972 B = 5007.370840 C = 5246.614244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.057 3.943 3 N -0.597 5.597 4 H 0.409 0.591 5 C 0.104 3.896 6 C -0.145 4.145 7 C 0.006 3.994 8 C 0.211 3.789 9 H 0.042 0.958 10 N -0.856 5.856 11 C -0.622 4.622 12 H 0.057 0.943 13 C 0.029 3.971 14 N -0.901 5.901 15 Si 1.049 2.951 16 H -0.284 1.284 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.125 4.125 20 C -0.081 4.081 21 C -0.121 4.121 22 C -0.173 4.173 23 C -0.072 4.072 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.113 0.887 28 H 0.330 0.670 29 H 0.326 0.674 30 H 0.269 0.731 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.371 -4.790 -6.529 17.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.050 4.050 3 N -0.201 5.201 4 H 0.245 0.755 5 C -0.002 4.002 6 C -0.166 4.166 7 C 0.004 3.996 8 C 0.102 3.898 9 H 0.060 0.940 10 N -0.388 5.388 11 C -0.662 4.662 12 H 0.076 0.924 13 C -0.177 4.177 14 N -0.535 5.535 15 Si 0.877 3.123 16 H -0.210 1.210 17 H -0.209 1.209 18 H -0.199 1.199 19 C -0.144 4.144 20 C -0.100 4.100 21 C -0.125 4.125 22 C -0.181 4.181 23 C -0.130 4.130 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.082 0.918 27 H 0.131 0.869 28 H 0.145 0.855 29 H 0.137 0.863 30 H 0.079 0.921 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.768 -3.435 -7.398 16.871 hybrid contribution -0.774 -0.622 1.426 1.738 sum -15.543 -4.057 -5.972 17.137 Atomic orbital electron populations 1.20375 0.88451 1.03130 1.02505 1.19894 0.92734 0.85830 1.06538 1.41559 1.04213 1.07566 1.66777 0.75541 1.18157 0.84068 0.94078 1.03923 1.19794 0.89091 0.98750 1.08978 1.19755 0.94266 0.93539 0.91996 1.18304 0.86812 0.92463 0.92226 0.94022 1.59836 1.15715 1.06647 1.56581 1.22645 1.15780 1.32805 0.94993 0.92449 1.25864 0.93279 0.98122 1.00446 1.70843 1.36703 1.37357 1.08547 0.83940 0.76634 0.76530 0.75150 1.21008 1.20887 1.19854 1.20448 0.97442 0.93775 1.02729 1.20129 0.90628 0.98719 1.00543 1.18911 0.92740 0.91952 1.08938 1.19952 0.91019 0.94264 1.12876 1.20043 1.00188 0.91598 1.01122 0.91050 0.90170 0.91784 0.86852 0.85514 0.86259 0.92109 0.86387 0.87016 0.92371 0.92463 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 9.99 36.01 0.36 -0.42 16 2 C 0.06 0.78 7.08 -81.77 -0.58 0.20 16 3 N -0.60 -8.85 6.07 -6.95 -0.04 -8.89 16 4 H 0.41 4.80 8.96 -40.82 -0.37 4.44 16 5 C 0.10 1.93 7.28 -83.99 -0.61 1.32 16 6 C -0.14 -2.97 9.68 -39.43 -0.38 -3.35 16 7 C 0.01 0.14 4.90 -104.58 -0.51 -0.37 16 8 C 0.21 5.09 2.47 -70.02 -0.17 4.92 16 9 H 0.04 1.02 6.69 -51.93 -0.35 0.67 16 10 N -0.86 -19.09 9.09 -6.65 -0.06 -19.15 16 11 C -0.62 -17.29 9.03 -34.44 -0.31 -17.60 16 12 H 0.06 1.76 7.99 -52.49 -0.42 1.34 16 13 C 0.03 0.82 5.41 -17.82 -0.10 0.72 16 14 N -0.90 -27.23 13.70 55.43 0.76 -26.47 16 15 Si 1.05 24.55 26.42 -169.99 -4.49 20.05 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.27 -5.80 5.62 56.52 0.32 -5.48 16 19 C -0.12 -2.56 9.20 -39.94 -0.37 -2.93 16 20 C -0.08 -1.51 10.05 -39.64 -0.40 -1.91 16 21 C -0.12 -2.24 6.35 -105.14 -0.67 -2.91 16 22 C -0.17 -2.65 6.31 -102.71 -0.65 -3.30 16 23 C -0.07 -0.84 9.95 36.01 0.36 -0.48 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.63 7.66 -51.93 -0.40 0.23 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.11 2.18 8.02 -52.49 -0.42 1.76 16 28 H 0.33 7.40 5.47 -39.29 -0.22 7.18 16 29 H 0.33 6.95 7.20 -39.29 -0.28 6.67 16 30 H 0.27 8.17 8.73 -40.82 -0.36 7.82 16 31 H 0.12 2.34 6.57 -52.49 -0.34 1.99 16 32 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.54 7.69 -51.92 -0.40 0.14 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 288.42 15.07 4.35 4.35 Total: -1.00 -31.67 288.42 -8.06 -39.73 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -4.54 Total: 16.49 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: -4.03 Total: -26.11 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.66 Total: -54.52 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -4.49 Total: 20.05 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.67 -8.06 -39.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261066989.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.762 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds