Wall clock time and date at job start Mon Mar 30 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.36834 * 125.03208 * 2 1 4 4 H 0.97006 * 125.05938 * 359.97438 * 3 2 1 5 5 C 1.37687 * 109.87389 * 179.97438 * 3 2 1 6 6 C 1.39128 * 133.50472 * 180.29902 * 5 3 2 7 7 C 1.37751 * 119.77246 * 180.15607 * 6 5 3 8 8 C 1.50700 * 119.66231 * 179.77341 * 7 6 5 9 9 H 1.09000 * 109.46815 * 339.71693 * 8 7 6 10 10 N 1.46903 * 109.46851 * 219.72298 * 8 7 6 11 11 C 1.50694 * 109.47443 * 99.72096 * 8 7 6 12 12 H 1.07997 * 120.00030 * 5.59629 * 11 8 7 13 13 C 1.37876 * 120.00013 * 185.58948 * 11 8 7 14 14 N 1.31518 * 119.99930 * 194.79315 * 13 11 8 15 15 Si 1.86796 * 120.00186 * 14.79885 * 13 11 8 16 16 H 1.48494 * 109.47518 * 179.97438 * 15 13 11 17 17 H 1.48507 * 109.47148 * 59.99455 * 15 13 11 18 18 H 1.48504 * 109.47193 * 300.00014 * 15 13 11 19 19 C 1.38830 * 120.66947 * 359.48472 * 7 6 5 20 20 C 1.36631 * 120.52853 * 0.28863 * 19 7 6 21 21 C 1.39631 * 119.75965 * 359.96615 * 20 19 7 22 22 C 1.34233 * 125.03843 * 179.97438 * 2 1 3 23 23 C 1.50700 * 126.50105 * 0.02562 * 22 2 1 24 24 H 1.09006 * 109.47026 * 89.98143 * 1 2 3 25 25 H 1.09004 * 109.46864 * 209.96861 * 1 2 3 26 26 H 1.08994 * 109.47464 * 329.97028 * 1 2 3 27 27 H 1.07993 * 120.11246 * 359.89875 * 6 5 3 28 28 H 1.00897 * 111.00140 * 179.02545 * 10 8 7 29 29 H 1.00910 * 110.99524 * 302.97733 * 10 8 7 30 30 H 0.96997 * 120.00389 * 354.90404 * 14 13 11 31 31 H 1.07996 * 119.73465 * 180.25362 * 19 7 6 32 32 H 1.07993 * 120.11779 * 179.97438 * 20 19 7 33 33 H 1.08996 * 109.47536 * 270.00114 * 23 22 2 34 34 H 1.09008 * 109.47169 * 29.99990 * 23 22 2 35 35 H 1.08998 * 109.47266 * 149.99853 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1204 0.0000 4 1 1.9622 2.0325 -0.0004 5 6 3.6215 0.7604 0.0006 6 6 4.8098 1.4840 0.0061 7 6 6.0159 0.8185 0.0017 8 6 7.3015 1.6047 0.0026 9 1 7.1080 2.6179 -0.3497 10 7 8.2736 0.9546 -0.8865 11 6 7.8575 1.6571 1.4022 12 1 7.3828 1.0955 2.1932 13 6 8.9724 2.4217 1.6730 14 7 9.6298 2.2501 2.7990 15 14 9.5489 3.7016 0.4406 16 1 10.7591 4.3840 0.9650 17 1 8.4721 4.7011 0.2245 18 1 9.8736 3.0376 -0.8475 19 6 6.0590 -0.5692 0.0026 20 6 4.9042 -1.2994 0.0019 21 6 3.6706 -0.6454 0.0010 22 6 2.2777 -1.0991 0.0005 23 6 1.8005 -2.5285 0.0006 24 1 -0.3633 0.0003 -1.0277 25 1 -0.3633 -0.8903 0.5134 26 1 -0.3634 0.8896 0.5143 27 1 4.7867 2.5636 0.0096 28 1 9.1394 1.4718 -0.9156 29 1 8.4333 -0.0025 -0.6095 30 1 9.2895 1.6392 3.4711 31 1 7.0130 -1.0754 0.0033 32 1 4.9455 -2.3786 0.0022 33 1 1.6850 -2.8730 1.0282 34 1 0.8414 -2.5914 -0.5136 35 1 2.5298 -3.1551 -0.5129 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261066989.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:29 Heat of formation + Delta-G solvation = 19.285410 kcal Electronic energy + Delta-G solvation = -16991.004012 eV Core-core repulsion = 14373.471900 eV Total energy + Delta-G solvation = -2617.532112 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.20661 -38.89490 -36.08902 -34.09073 -33.83808 -31.49374 -31.00677 -28.59971 -27.85074 -26.49923 -23.79335 -23.03003 -21.19926 -19.91782 -19.83506 -18.13668 -17.30609 -17.14199 -15.89052 -15.67631 -15.37329 -14.99233 -14.77678 -14.63737 -14.29250 -14.02561 -13.68148 -13.59470 -13.56602 -13.19596 -12.98353 -12.62153 -12.32210 -12.10762 -12.04236 -11.93173 -11.55328 -11.32841 -10.66631 -10.32470 -9.51049 -9.03537 -8.71776 -8.29977 -6.50320 0.27939 0.77403 1.41725 1.48714 1.69187 1.76004 2.23689 2.39716 2.99398 3.03512 3.78731 3.90875 4.02517 4.24739 4.32719 4.40129 4.43703 4.54486 4.62138 4.78927 4.83112 4.94675 4.98166 5.00313 5.13258 5.18454 5.21193 5.35540 5.65530 5.68897 5.83433 5.91312 5.97793 6.01299 6.32402 6.37646 6.54690 6.76803 6.81543 7.31184 8.53574 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.039790 B = 0.005590 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.525972 B = 5007.370840 C = 5246.614244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.073 3.927 3 N -0.590 5.590 4 H 0.423 0.577 5 C 0.085 3.915 6 C -0.153 4.153 7 C -0.031 4.031 8 C 0.219 3.781 9 H 0.041 0.959 10 N -0.844 5.844 11 C -0.621 4.621 12 H 0.011 0.989 13 C -0.019 4.019 14 N -0.931 5.931 15 Si 1.090 2.910 16 H -0.287 1.287 17 H -0.268 1.268 18 H -0.238 1.238 19 C -0.144 4.144 20 C -0.082 4.082 21 C -0.136 4.136 22 C -0.199 4.199 23 C -0.069 4.069 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.330 0.670 29 H 0.330 0.670 30 H 0.251 0.749 31 H 0.114 0.886 32 H 0.136 0.864 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.064 -4.961 -8.235 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.035 4.035 3 N -0.195 5.195 4 H 0.261 0.739 5 C -0.022 4.022 6 C -0.174 4.174 7 C -0.033 4.033 8 C 0.109 3.891 9 H 0.058 0.942 10 N -0.375 5.375 11 C -0.660 4.660 12 H 0.030 0.970 13 C -0.218 4.218 14 N -0.566 5.566 15 Si 0.911 3.089 16 H -0.213 1.213 17 H -0.193 1.193 18 H -0.163 1.163 19 C -0.163 4.163 20 C -0.100 4.100 21 C -0.141 4.141 22 C -0.206 4.206 23 C -0.126 4.126 24 H 0.109 0.891 25 H 0.116 0.884 26 H 0.099 0.901 27 H 0.134 0.866 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.060 0.940 31 H 0.132 0.868 32 H 0.154 0.846 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.498 -3.624 -9.113 20.059 hybrid contribution -0.147 -0.643 2.006 2.112 sum -17.645 -4.266 -7.107 19.495 Atomic orbital electron populations 1.20569 0.84524 1.04875 1.04282 1.20726 0.94937 0.84683 1.03111 1.41672 1.02958 1.09011 1.65810 0.73861 1.18179 0.85150 0.94393 1.04493 1.19859 0.89599 0.99047 1.08918 1.19690 0.94016 0.94295 0.95285 1.18120 0.88102 0.93078 0.89823 0.94156 1.59778 1.15394 1.06807 1.55545 1.22772 1.15636 1.31594 0.96025 0.97036 1.27333 0.93561 0.99534 1.01332 1.70981 1.37871 1.38269 1.09508 0.83452 0.76513 0.74558 0.74379 1.21266 1.19327 1.16252 1.20479 0.98218 0.93430 1.04176 1.20373 0.90250 0.99911 0.99473 1.19429 0.94344 0.92271 1.08029 1.20409 0.89420 0.96663 1.14114 1.20105 1.01367 0.89214 1.01953 0.89060 0.88409 0.90119 0.86554 0.85520 0.85749 0.93980 0.86755 0.84595 0.91699 0.89754 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 9.99 71.24 0.71 -0.40 16 2 C 0.07 1.75 7.08 40.87 0.29 2.04 16 3 N -0.59 -16.18 6.07 -175.91 -1.07 -17.25 16 4 H 0.42 8.92 8.96 -92.70 -0.83 8.09 16 5 C 0.08 3.11 7.28 39.03 0.28 3.39 16 6 C -0.15 -6.35 9.68 22.37 0.22 -6.13 16 7 C -0.03 -1.42 4.90 -19.84 -0.10 -1.51 16 8 C 0.22 10.71 2.47 43.42 0.11 10.82 16 9 H 0.04 1.98 6.69 -2.39 -0.02 1.96 16 10 N -0.84 -37.50 9.09 -174.96 -1.59 -39.09 16 11 C -0.62 -35.81 9.03 25.60 0.23 -35.58 16 12 H 0.01 0.74 7.99 -2.91 -0.02 0.71 16 13 C -0.02 -1.07 5.41 84.65 0.46 -0.62 16 14 N -0.93 -58.29 13.70 21.45 0.29 -58.00 16 15 Si 1.09 49.27 26.42 68.60 1.81 51.08 16 16 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 17 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 18 H -0.24 -9.40 5.62 99.48 0.56 -8.84 16 19 C -0.14 -6.05 9.20 22.04 0.20 -5.84 16 20 C -0.08 -3.02 10.05 22.23 0.22 -2.79 16 21 C -0.14 -4.89 6.35 -20.20 -0.13 -5.02 16 22 C -0.20 -5.56 6.31 -18.63 -0.12 -5.68 16 23 C -0.07 -1.39 9.95 71.24 0.71 -0.68 16 24 H 0.09 0.93 8.14 -2.38 -0.02 0.92 16 25 H 0.10 1.01 7.66 -2.39 -0.02 0.99 16 26 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.12 4.55 8.02 -2.91 -0.02 4.53 16 28 H 0.33 14.43 5.47 -89.70 -0.49 13.94 16 29 H 0.33 14.27 7.20 -89.69 -0.65 13.62 16 30 H 0.25 16.14 8.73 -92.71 -0.81 15.33 16 31 H 0.11 4.71 6.57 -2.91 -0.02 4.69 16 32 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.22 7.69 -2.38 -0.02 1.20 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -71.36 288.42 1.52 -69.85 By element: Atomic # 1 Polarization: 42.44 SS G_CDS: -1.02 Total: 41.42 kcal Atomic # 6 Polarization: -51.10 SS G_CDS: 3.09 Total: -48.01 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -2.36 Total: -114.34 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 1.81 Total: 51.08 kcal Total: -71.36 1.52 -69.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261066989.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.131 kcal (2) G-P(sol) polarization free energy of solvation -71.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds