Wall clock time and date at job start Mon Mar 30 2020 05:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37788 * 119.66754 * 2 1 4 4 C 1.39083 * 119.77734 * 180.02562 * 3 2 1 5 5 N 1.37691 * 133.50829 * 179.97438 * 4 3 2 6 6 H 0.97001 * 125.06738 * 0.02562 * 5 4 3 7 7 C 1.36840 * 109.87085 * 179.97438 * 5 4 3 8 8 C 1.50703 * 125.02866 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.46983 * 175.04186 * 8 7 5 10 10 N 1.46899 * 109.47240 * 55.04222 * 8 7 5 11 11 C 1.50701 * 109.47084 * 295.03717 * 8 7 5 12 12 H 1.08002 * 119.99949 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99953 * 179.97438 * 11 8 7 14 14 N 1.31509 * 119.99799 * 180.02562 * 13 11 8 15 15 Si 1.86794 * 119.99940 * 0.02562 * 13 11 8 16 16 H 1.48492 * 109.47410 * 89.99629 * 15 13 11 17 17 H 1.48501 * 109.47118 * 209.99900 * 15 13 11 18 18 H 1.48505 * 109.47176 * 329.99262 * 15 13 11 19 19 C 1.34227 * 109.93986 * 0.07816 * 7 5 4 20 20 C 1.40702 * 119.33534 * 0.02562 * 4 3 2 21 21 C 1.39592 * 119.92958 * 359.97438 * 20 4 3 22 22 C 1.50695 * 120.11580 * 180.27224 * 21 20 4 23 23 C 1.36665 * 119.76143 * 0.02562 * 21 20 4 24 24 H 1.09000 * 109.47281 * 269.97638 * 1 2 3 25 25 H 1.08999 * 109.47055 * 29.98067 * 1 2 3 26 26 H 1.09003 * 109.47074 * 149.98030 * 1 2 3 27 27 H 1.08006 * 120.10820 * 0.04011 * 3 2 1 28 28 H 1.00906 * 111.00103 * 299.99767 * 10 8 7 29 29 H 1.00899 * 111.00250 * 63.95297 * 10 8 7 30 30 H 0.97006 * 120.00123 * 180.02562 * 14 13 11 31 31 H 1.08002 * 126.50395 * 179.97438 * 19 7 5 32 32 H 1.09000 * 109.47478 * 269.72437 * 22 21 20 33 33 H 1.08997 * 109.47272 * 29.73037 * 22 21 20 34 34 H 1.09004 * 109.47054 * 149.72842 * 22 21 20 35 35 H 1.08001 * 119.73328 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1890 1.1973 0.0000 4 6 3.5798 1.1999 -0.0005 5 7 4.5259 2.2004 -0.0011 6 1 4.3319 3.1508 -0.0009 7 6 5.7805 1.6541 -0.0009 8 6 7.0662 2.4403 -0.0009 9 1 7.9103 1.7563 0.0881 10 7 7.0699 3.3729 1.1341 11 6 7.1813 3.2152 -1.2883 12 1 6.4012 3.1457 -2.0319 13 6 8.2819 4.0137 -1.5163 14 7 8.3821 4.6903 -2.6395 15 14 9.6308 4.1344 -0.2298 16 1 10.6503 3.0845 -0.4814 17 1 10.2694 5.4729 -0.3062 18 1 9.0450 3.9419 1.1212 19 6 5.6965 0.3145 -0.0019 20 6 4.2715 -0.0253 -0.0016 21 6 3.5604 -1.2266 -0.0016 22 6 4.2969 -2.5412 0.0034 23 6 2.1939 -1.2060 -0.0011 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6453 2.1305 0.0007 28 1 6.2963 4.0180 1.0746 29 1 7.0587 2.8748 2.0115 30 1 9.1566 5.2518 -2.8001 31 1 6.5228 -0.3811 -0.0024 32 1 4.4736 -2.8627 -1.0230 33 1 5.2513 -2.4211 0.5160 34 1 3.6985 -3.2910 0.5210 35 1 1.6442 -2.1356 -0.0015 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261068725.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:25 Heat of formation + Delta-G solvation = 44.937812 kcal Electronic energy + Delta-G solvation = -17003.285999 eV Core-core repulsion = 14386.866259 eV Total energy + Delta-G solvation = -2616.419740 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.86345 -37.46417 -34.50996 -33.38313 -31.84934 -29.92794 -29.53364 -27.09154 -26.72298 -25.20860 -22.11152 -21.35361 -19.94086 -19.34430 -17.01026 -16.71277 -15.71773 -14.86373 -14.69864 -14.36859 -14.17589 -13.89257 -13.17882 -13.16580 -12.97114 -12.81779 -12.44577 -12.29630 -12.24808 -11.83821 -11.68719 -11.24366 -10.93176 -10.64799 -10.54227 -10.21601 -10.09063 -9.38106 -9.01953 -8.64257 -7.68648 -7.40325 -7.04752 -6.10118 -4.22722 1.48429 1.98154 3.29785 3.45317 3.56162 3.68892 3.85667 4.18055 4.62086 4.98297 5.04653 5.20190 5.32434 5.37418 5.50289 5.63635 5.65079 5.69234 5.76967 5.83347 5.88715 5.95647 6.03454 6.09799 6.29670 6.42018 6.52664 6.64702 6.86215 6.97163 7.20460 7.38050 7.42595 7.66941 7.98376 8.07531 8.21909 8.53973 8.88056 9.52422 10.99157 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.036405 B = 0.005752 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.949685 B = 4866.551570 C = 5176.868981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.080 4.080 3 C -0.135 4.135 4 C 0.095 3.905 5 N -0.583 5.583 6 H 0.413 0.587 7 C 0.110 3.890 8 C 0.238 3.762 9 H 0.063 0.937 10 N -0.832 5.832 11 C -0.530 4.530 12 H 0.070 0.930 13 C 0.087 3.913 14 N -0.895 5.895 15 Si 0.868 3.132 16 H -0.295 1.295 17 H -0.303 1.303 18 H -0.193 1.193 19 C -0.231 4.231 20 C -0.101 4.101 21 C -0.043 4.043 22 C -0.109 4.109 23 C -0.155 4.155 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.113 0.887 28 H 0.326 0.674 29 H 0.312 0.688 30 H 0.265 0.735 31 H 0.138 0.862 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.331 -9.537 7.842 16.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.082 4.082 3 C -0.156 4.156 4 C -0.013 4.013 5 N -0.184 5.184 6 H 0.250 0.750 7 C -0.001 4.001 8 C 0.128 3.872 9 H 0.080 0.920 10 N -0.360 5.360 11 C -0.568 4.568 12 H 0.088 0.912 13 C -0.118 4.118 14 N -0.531 5.531 15 Si 0.695 3.305 16 H -0.222 1.222 17 H -0.230 1.230 18 H -0.114 1.114 19 C -0.256 4.256 20 C -0.106 4.106 21 C -0.044 4.044 22 C -0.166 4.166 23 C -0.174 4.174 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.131 0.869 28 H 0.139 0.861 29 H 0.123 0.877 30 H 0.074 0.926 31 H 0.156 0.844 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.502 -9.029 7.474 15.738 hybrid contribution -0.293 0.272 0.396 0.563 sum -10.794 -8.757 7.871 15.973 Atomic orbital electron populations 1.20691 0.91598 1.02234 1.01710 1.19344 0.95189 0.92280 1.01337 1.19766 0.90054 0.97778 1.07962 1.18221 0.90553 0.88434 1.04091 1.41765 1.04428 1.07872 1.64368 0.75033 1.22011 0.87443 0.93619 0.97021 1.18457 0.86772 0.90335 0.91664 0.91961 1.60093 1.50361 1.21325 1.04230 1.20693 1.08035 1.28307 0.99802 0.91234 1.24983 0.98243 0.93391 0.95153 1.69953 1.29913 1.28358 1.24893 0.87169 0.79700 0.76128 0.87530 1.22199 1.23028 1.11419 1.21341 0.93719 0.93911 1.16615 1.19088 0.93575 0.91673 1.06276 1.18987 0.93031 0.93538 0.98820 1.20698 1.00102 0.93759 1.01995 1.20233 0.93182 0.96908 1.07078 0.91747 0.92024 0.91888 0.86919 0.86100 0.87660 0.92600 0.84412 0.91463 0.91568 0.92141 0.86816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 9.99 36.01 0.36 -0.73 16 2 C -0.08 -1.13 5.88 -104.58 -0.61 -1.74 16 3 C -0.13 -2.10 9.71 -39.43 -0.38 -2.48 16 4 C 0.09 1.71 7.28 -83.99 -0.61 1.10 16 5 N -0.58 -10.70 6.07 -6.95 -0.04 -10.74 16 6 H 0.41 6.96 8.96 -40.82 -0.37 6.60 16 7 C 0.11 2.21 5.81 -81.77 -0.47 1.74 16 8 C 0.24 5.19 2.58 -70.02 -0.18 5.01 16 9 H 0.06 1.39 7.51 -51.93 -0.39 1.00 16 10 N -0.83 -16.07 5.82 -6.65 -0.04 -16.11 16 11 C -0.53 -14.25 9.29 -34.44 -0.32 -14.57 16 12 H 0.07 2.09 7.98 -52.49 -0.42 1.67 16 13 C 0.09 2.45 5.47 -17.82 -0.10 2.36 16 14 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 15 Si 0.87 20.89 26.94 -169.99 -4.58 16.31 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 18 H -0.19 -4.24 5.17 56.52 0.29 -3.95 16 19 C -0.23 -4.44 10.61 -37.67 -0.40 -4.84 16 20 C -0.10 -1.85 6.14 -105.14 -0.65 -2.50 16 21 C -0.04 -0.68 5.87 -104.69 -0.61 -1.30 16 22 C -0.11 -1.38 9.95 36.00 0.36 -1.02 16 23 C -0.15 -2.20 9.26 -39.95 -0.37 -2.57 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 26 H 0.06 0.57 8.08 -51.93 -0.42 0.16 16 27 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 28 H 0.33 6.02 8.98 -39.29 -0.35 5.66 16 29 H 0.31 5.27 9.06 -39.29 -0.36 4.91 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.14 2.43 8.06 -52.49 -0.42 2.01 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.83 7.90 -51.93 -0.41 0.42 16 34 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 293.41 15.07 4.42 4.42 Total: -1.00 -30.90 293.41 -8.37 -39.27 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -4.91 Total: 14.70 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -3.99 Total: -21.55 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.69 Total: -53.15 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.58 Total: 16.31 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.90 -8.37 -39.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261068725.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.208 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds