Wall clock time and date at job start Mon Mar 30 2020 05:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37788 * 119.66754 * 2 1 4 4 C 1.39083 * 119.77734 * 180.02562 * 3 2 1 5 5 N 1.37691 * 133.50829 * 179.97438 * 4 3 2 6 6 H 0.97001 * 125.06738 * 0.02562 * 5 4 3 7 7 C 1.36840 * 109.87085 * 179.97438 * 5 4 3 8 8 C 1.50703 * 125.02866 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.46983 * 175.04186 * 8 7 5 10 10 N 1.46899 * 109.47240 * 55.04222 * 8 7 5 11 11 C 1.50701 * 109.47084 * 295.03717 * 8 7 5 12 12 H 1.08002 * 119.99949 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99953 * 179.97438 * 11 8 7 14 14 N 1.31509 * 119.99799 * 180.02562 * 13 11 8 15 15 Si 1.86794 * 119.99940 * 0.02562 * 13 11 8 16 16 H 1.48492 * 109.47410 * 89.99629 * 15 13 11 17 17 H 1.48501 * 109.47118 * 209.99900 * 15 13 11 18 18 H 1.48505 * 109.47176 * 329.99262 * 15 13 11 19 19 C 1.34227 * 109.93986 * 0.07816 * 7 5 4 20 20 C 1.40702 * 119.33534 * 0.02562 * 4 3 2 21 21 C 1.39592 * 119.92958 * 359.97438 * 20 4 3 22 22 C 1.50695 * 120.11580 * 180.27224 * 21 20 4 23 23 C 1.36665 * 119.76143 * 0.02562 * 21 20 4 24 24 H 1.09000 * 109.47281 * 269.97638 * 1 2 3 25 25 H 1.08999 * 109.47055 * 29.98067 * 1 2 3 26 26 H 1.09003 * 109.47074 * 149.98030 * 1 2 3 27 27 H 1.08006 * 120.10820 * 0.04011 * 3 2 1 28 28 H 1.00906 * 111.00103 * 299.99767 * 10 8 7 29 29 H 1.00899 * 111.00250 * 63.95297 * 10 8 7 30 30 H 0.97006 * 120.00123 * 180.02562 * 14 13 11 31 31 H 1.08002 * 126.50395 * 179.97438 * 19 7 5 32 32 H 1.09000 * 109.47478 * 269.72437 * 22 21 20 33 33 H 1.08997 * 109.47272 * 29.73037 * 22 21 20 34 34 H 1.09004 * 109.47054 * 149.72842 * 22 21 20 35 35 H 1.08001 * 119.73328 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1890 1.1973 0.0000 4 6 3.5798 1.1999 -0.0005 5 7 4.5259 2.2004 -0.0011 6 1 4.3319 3.1508 -0.0009 7 6 5.7805 1.6541 -0.0009 8 6 7.0662 2.4403 -0.0009 9 1 7.9103 1.7563 0.0881 10 7 7.0699 3.3729 1.1341 11 6 7.1813 3.2152 -1.2883 12 1 6.4012 3.1457 -2.0319 13 6 8.2819 4.0137 -1.5163 14 7 8.3821 4.6903 -2.6395 15 14 9.6308 4.1344 -0.2298 16 1 10.6503 3.0845 -0.4814 17 1 10.2694 5.4729 -0.3062 18 1 9.0450 3.9419 1.1212 19 6 5.6965 0.3145 -0.0019 20 6 4.2715 -0.0253 -0.0016 21 6 3.5604 -1.2266 -0.0016 22 6 4.2969 -2.5412 0.0034 23 6 2.1939 -1.2060 -0.0011 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6453 2.1305 0.0007 28 1 6.2963 4.0180 1.0746 29 1 7.0587 2.8748 2.0115 30 1 9.1566 5.2518 -2.8001 31 1 6.5228 -0.3811 -0.0024 32 1 4.4736 -2.8627 -1.0230 33 1 5.2513 -2.4211 0.5160 34 1 3.6985 -3.2910 0.5210 35 1 1.6442 -2.1356 -0.0015 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261068725.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:24 Heat of formation + Delta-G solvation = 24.498986 kcal Electronic energy + Delta-G solvation = -17004.172293 eV Core-core repulsion = 14386.866259 eV Total energy + Delta-G solvation = -2617.306034 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.19448 -38.72888 -36.21554 -34.49202 -33.89061 -31.19169 -30.82237 -28.59410 -27.99837 -26.65258 -23.68387 -22.67149 -21.21851 -20.77942 -18.98039 -18.14016 -17.12132 -16.44999 -16.13748 -15.88911 -15.55003 -15.30891 -14.59795 -14.32043 -14.22453 -14.03847 -13.90717 -13.67997 -13.45583 -13.25549 -12.80859 -12.68397 -12.44738 -12.21707 -11.97021 -11.68071 -11.64811 -11.38192 -10.78826 -10.34637 -9.11900 -8.88913 -8.39836 -8.27165 -6.43221 0.24769 0.76577 1.52475 1.59258 1.84649 1.95286 2.31926 2.59349 2.96165 3.12132 3.82057 4.00038 4.04051 4.12953 4.28564 4.41312 4.49189 4.60024 4.73957 4.77569 4.86541 4.87895 4.92073 4.94230 5.12777 5.14547 5.23405 5.40234 5.46604 5.70338 5.78483 5.95704 5.98986 6.08979 6.31956 6.41495 6.69546 6.73378 6.92508 7.35682 8.85595 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.036405 B = 0.005752 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.949685 B = 4866.551570 C = 5176.868981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.072 4.072 3 C -0.154 4.154 4 C 0.078 3.922 5 N -0.584 5.584 6 H 0.415 0.585 7 C 0.083 3.917 8 C 0.250 3.750 9 H 0.062 0.938 10 N -0.830 5.830 11 C -0.524 4.524 12 H 0.022 0.978 13 C 0.029 3.971 14 N -0.949 5.949 15 Si 0.933 3.067 16 H -0.299 1.299 17 H -0.315 1.315 18 H -0.155 1.155 19 C -0.234 4.234 20 C -0.133 4.133 21 C -0.052 4.052 22 C -0.107 4.107 23 C -0.157 4.157 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.128 0.872 28 H 0.333 0.667 29 H 0.334 0.666 30 H 0.264 0.736 31 H 0.146 0.854 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.908 -11.334 9.863 19.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.073 4.073 3 C -0.175 4.175 4 C -0.030 4.030 5 N -0.186 5.186 6 H 0.252 0.748 7 C -0.028 4.028 8 C 0.139 3.861 9 H 0.080 0.920 10 N -0.360 5.360 11 C -0.562 4.562 12 H 0.040 0.960 13 C -0.170 4.170 14 N -0.588 5.588 15 Si 0.758 3.242 16 H -0.226 1.226 17 H -0.243 1.243 18 H -0.075 1.075 19 C -0.259 4.259 20 C -0.138 4.138 21 C -0.053 4.053 22 C -0.164 4.164 23 C -0.176 4.176 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.072 0.928 31 H 0.164 0.836 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.110 -10.845 9.519 18.838 hybrid contribution -0.015 0.715 -0.285 0.770 sum -12.124 -10.130 9.233 18.299 Atomic orbital electron populations 1.20777 0.88656 1.03528 1.03131 1.19883 0.97330 0.91612 0.98483 1.20093 0.89221 0.99377 1.08771 1.18633 0.91547 0.88246 1.04532 1.41698 1.04167 1.08127 1.64624 0.74837 1.21694 0.87428 0.93914 0.99783 1.18048 0.88027 0.89934 0.90055 0.91977 1.59750 1.50775 1.21049 1.04412 1.20878 1.06235 1.28083 1.01027 0.96005 1.25924 1.00907 0.93137 0.97076 1.70103 1.30982 1.30273 1.27457 0.86244 0.76256 0.75000 0.86681 1.22643 1.24340 1.07507 1.21574 0.94894 0.93813 1.15638 1.19357 0.93182 0.93019 1.08253 1.19415 0.93981 0.93868 0.98015 1.20748 1.00111 0.92903 1.02638 1.20676 0.92819 0.98364 1.05730 0.90086 0.91301 0.90122 0.85424 0.85377 0.85321 0.92775 0.83626 0.90963 0.91965 0.89505 0.83657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.75 9.99 71.24 0.71 -1.04 16 2 C -0.07 -1.81 5.88 -19.84 -0.12 -1.93 16 3 C -0.15 -4.57 9.71 22.37 0.22 -4.35 16 4 C 0.08 2.78 7.28 39.03 0.28 3.07 16 5 N -0.58 -21.76 6.07 -175.91 -1.07 -22.83 16 6 H 0.41 14.37 8.96 -92.71 -0.83 13.54 16 7 C 0.08 3.36 5.81 40.86 0.24 3.60 16 8 C 0.25 10.90 2.58 43.42 0.11 11.01 16 9 H 0.06 2.72 7.51 -2.39 -0.02 2.71 16 10 N -0.83 -30.75 5.82 -174.95 -1.02 -31.76 16 11 C -0.52 -29.04 9.29 25.60 0.24 -28.81 16 12 H 0.02 1.38 7.98 -2.91 -0.02 1.36 16 13 C 0.03 1.65 5.47 84.66 0.46 2.11 16 14 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 15 Si 0.93 43.49 26.94 68.60 1.85 45.34 16 16 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 17 H -0.32 -15.25 7.11 99.48 0.71 -14.55 16 18 H -0.15 -6.24 5.17 99.48 0.51 -5.73 16 19 C -0.23 -9.01 10.61 23.51 0.25 -8.76 16 20 C -0.13 -4.81 6.14 -20.20 -0.12 -4.93 16 21 C -0.05 -1.54 5.87 -19.91 -0.12 -1.66 16 22 C -0.11 -2.46 9.95 71.23 0.71 -1.75 16 23 C -0.16 -3.97 9.26 22.03 0.20 -3.76 16 24 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.08 8.08 -2.39 -0.02 1.07 16 26 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 27 H 0.13 3.28 8.06 -2.91 -0.02 3.25 16 28 H 0.33 11.92 8.98 -89.69 -0.81 11.11 16 29 H 0.33 10.41 9.06 -89.69 -0.81 9.60 16 30 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 31 H 0.15 5.13 8.06 -2.91 -0.02 5.11 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.46 7.90 -2.39 -0.02 1.44 16 34 H 0.09 1.51 8.08 -2.38 -0.02 1.49 16 35 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -69.01 293.41 1.61 -67.40 By element: Atomic # 1 Polarization: 39.97 SS G_CDS: -1.52 Total: 38.45 kcal Atomic # 6 Polarization: -40.28 SS G_CDS: 3.07 Total: -37.21 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -1.79 Total: -113.97 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.85 Total: 45.34 kcal Total: -69.01 1.61 -67.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261068725.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.895 kcal (2) G-P(sol) polarization free energy of solvation -69.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds