Wall clock time and date at job start Mon Mar 30 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46973 * 2 1 4 4 C 1.53002 * 109.46705 * 119.99471 * 2 1 3 5 5 C 1.50703 * 109.46856 * 175.00087 * 4 2 1 6 6 N 1.30829 * 125.54007 * 269.99725 * 5 4 2 7 7 C 1.33670 * 109.75741 * 179.97438 * 6 5 4 8 8 C 1.36217 * 107.83871 * 0.02562 * 7 6 5 9 9 C 1.46886 * 133.92197 * 180.02562 * 8 7 6 10 10 C 1.40297 * 121.00302 * 359.97438 * 9 8 7 11 11 H 1.08003 * 119.99956 * 335.81470 * 10 9 8 12 12 C 1.39794 * 120.00132 * 155.81035 * 10 9 8 13 13 N 1.30956 * 119.99908 * 342.47998 * 12 10 9 14 14 Si 1.86801 * 120.00106 * 162.48079 * 12 10 9 15 15 H 1.48492 * 109.47365 * 94.68818 * 14 12 10 16 16 H 1.48504 * 109.47066 * 214.68583 * 14 12 10 17 17 H 1.48493 * 109.46894 * 334.68288 * 14 12 10 18 18 C 1.40855 * 117.99591 * 179.97438 * 9 8 7 19 19 C 1.39133 * 119.17556 * 359.79027 * 18 9 8 20 20 C 1.35656 * 121.45844 * 0.45323 * 19 18 9 21 21 N 1.36009 * 125.53712 * 90.00501 * 5 4 2 22 22 H 1.08999 * 109.47384 * 300.00852 * 1 2 3 23 23 H 1.09008 * 109.46428 * 60.00176 * 1 2 3 24 24 H 1.08995 * 109.47372 * 179.97438 * 1 2 3 25 25 H 1.08988 * 109.47312 * 239.99617 * 2 1 3 26 26 H 1.08997 * 109.46961 * 299.99338 * 3 2 1 27 27 H 1.09005 * 109.47556 * 59.99781 * 3 2 1 28 28 H 1.09001 * 109.47076 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47177 * 55.00092 * 4 2 1 30 30 H 1.09000 * 109.47531 * 295.00300 * 4 2 1 31 31 H 1.08007 * 126.08028 * 179.97438 * 7 6 5 32 32 H 0.96996 * 119.99789 * 179.97438 * 13 12 10 33 33 H 1.07995 * 120.41325 * 180.02562 * 18 9 8 34 34 H 1.08006 * 119.26822 * 180.23041 * 19 18 9 35 35 H 1.07992 * 119.06103 * 179.79266 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5419 -0.8293 1.1891 6 7 4.2123 -1.8179 0.6553 7 6 5.5242 -1.5909 0.7752 8 6 5.6847 -0.4003 1.4171 9 6 6.8554 0.3817 1.8361 10 6 8.1577 -0.0767 1.5863 11 1 8.3421 -1.1324 1.4523 12 6 9.2165 0.8329 1.5109 13 7 8.9735 2.1068 1.3285 14 14 10.9778 0.2314 1.6703 15 1 11.5438 -0.0068 0.3183 16 1 11.7896 1.2574 2.3729 17 1 11.0002 -1.0343 2.4464 18 6 6.6313 1.6056 2.4962 19 6 5.3240 2.0259 2.7203 20 6 4.2627 1.2789 2.3254 21 7 4.4207 0.0849 1.6809 22 1 -0.3634 0.5140 0.8899 23 1 -0.3632 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8898 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6053 -1.7197 1.2953 30 1 1.7516 -0.1582 2.1371 31 1 6.3160 -2.2372 0.4261 32 1 9.7082 2.7380 1.2765 33 1 7.4637 2.2121 2.8209 34 1 5.1504 2.9659 3.2230 35 1 3.2644 1.6407 2.5221 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261070543.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:33 Heat of formation + Delta-G solvation = 51.072706 kcal Electronic energy + Delta-G solvation = -17367.124609 eV Core-core repulsion = 14750.970897 eV Total energy + Delta-G solvation = -2616.153711 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.33765 -36.32358 -35.68397 -34.17264 -31.38028 -29.75682 -28.68616 -26.92045 -25.72069 -24.93853 -21.94700 -20.78794 -20.55559 -19.27454 -17.28451 -16.29685 -15.38619 -15.08866 -14.81972 -14.54419 -14.03772 -13.45675 -13.38019 -13.22811 -12.71638 -12.13358 -11.91904 -11.81323 -11.71320 -11.57538 -11.32071 -10.95146 -10.72693 -10.63583 -10.37909 -10.32284 -10.24568 -9.97170 -9.64445 -9.12954 -8.72148 -7.89969 -7.12124 -6.38714 -4.51339 2.30023 2.78710 2.92552 2.93543 3.00815 3.69173 4.02262 4.12400 4.29447 5.07480 5.16125 5.21696 5.31934 5.58324 5.74074 5.80780 5.83297 5.93589 6.00957 6.09573 6.13035 6.25340 6.31515 6.39445 6.50015 6.60799 6.62806 6.73880 6.81376 6.89728 7.31129 7.57687 7.74442 7.83564 7.94371 8.31765 8.48058 8.53111 8.72427 9.10681 9.81114 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.040065 B = 0.006187 C = 0.005713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.695025 B = 4524.870137 C = 4899.507139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.009 4.009 5 C 0.112 3.888 6 N -0.477 5.477 7 C -0.048 4.048 8 C -0.004 4.004 9 C 0.145 3.855 10 C -0.411 4.411 11 H 0.089 0.911 12 C 0.071 3.929 13 N -0.760 5.760 14 Si 0.919 3.081 15 H -0.266 1.266 16 H -0.272 1.272 17 H -0.255 1.255 18 C -0.270 4.270 19 C -0.054 4.054 20 C -0.150 4.150 21 N -0.315 5.315 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.161 0.839 32 H 0.288 0.712 33 H 0.124 0.876 34 H 0.106 0.894 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.093 0.278 0.149 6.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.048 4.048 5 C -0.141 4.141 6 N -0.194 5.194 7 C -0.202 4.202 8 C -0.119 4.119 9 C 0.140 3.860 10 C -0.439 4.439 11 H 0.107 0.893 12 C -0.151 4.151 13 N -0.382 5.382 14 Si 0.742 3.258 15 H -0.191 1.191 16 H -0.196 1.196 17 H -0.179 1.179 18 C -0.292 4.292 19 C -0.075 4.075 20 C -0.269 4.269 21 N 0.017 4.983 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.178 0.822 32 H 0.099 0.901 33 H 0.142 0.858 34 H 0.124 0.876 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.536 -0.114 -0.229 6.541 hybrid contribution 1.203 0.757 0.397 1.475 sum -5.334 0.643 0.168 5.375 Atomic orbital electron populations 1.21830 0.95409 1.01466 1.01419 1.21128 0.94819 0.96536 0.98618 1.21906 1.02222 0.95525 1.00755 1.19741 0.86256 1.01145 0.97687 1.22600 0.93128 0.89430 1.08915 1.69789 1.04640 1.24450 1.20537 1.21625 0.92714 0.97096 1.08792 1.20875 0.85174 0.98441 1.07421 1.18030 0.89206 0.90496 0.88248 1.19417 0.90811 0.95633 1.38025 0.89273 1.26058 1.02589 0.94377 0.92100 1.69910 1.35481 1.03338 1.29430 0.86102 0.79837 0.80183 0.79712 1.19064 1.19649 1.17883 1.20995 0.94762 1.01576 1.11872 1.20137 0.92853 0.97091 0.97432 1.20247 0.98814 0.90967 1.16913 1.42199 1.07091 1.14231 1.34772 0.92894 0.92892 0.92733 0.90872 0.93349 0.93095 0.91910 0.90085 0.91553 0.82204 0.90135 0.85803 0.87582 0.86001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.19 37.16 0.34 -1.34 16 2 C -0.09 -1.38 2.91 -90.61 -0.26 -1.65 16 3 C -0.15 -2.31 8.27 37.16 0.31 -2.01 16 4 C -0.01 -0.15 5.16 -27.88 -0.14 -0.30 16 5 C 0.11 2.45 6.46 -154.25 -1.00 1.45 16 6 N -0.48 -11.23 11.21 -10.27 -0.12 -11.35 16 7 C -0.05 -1.15 11.81 -17.48 -0.21 -1.36 16 8 C 0.00 -0.11 6.80 -82.35 -0.56 -0.67 16 9 C 0.15 3.78 5.73 -104.64 -0.60 3.18 16 10 C -0.41 -10.23 8.99 -38.23 -0.34 -10.58 16 11 H 0.09 2.11 7.90 -52.48 -0.41 1.69 16 12 C 0.07 1.65 5.17 -17.34 -0.09 1.56 16 13 N -0.76 -18.21 10.96 55.54 0.61 -17.60 16 14 Si 0.92 17.14 29.59 -169.99 -5.03 12.11 16 15 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 16 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 17 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 18 C -0.27 -6.79 8.81 -38.26 -0.34 -7.13 16 19 C -0.05 -1.22 9.89 -40.17 -0.40 -1.62 16 20 C -0.15 -3.29 9.32 -16.35 -0.15 -3.44 16 21 N -0.32 -7.40 2.55 -56.53 -0.14 -7.55 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 1.21 8.14 -51.94 -0.42 0.79 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.74 7.81 -51.93 -0.41 0.34 16 28 H 0.06 1.22 6.06 -51.93 -0.31 0.90 16 29 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 31 H 0.16 3.52 8.06 -52.48 -0.42 3.09 16 32 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 33 H 0.12 3.17 6.21 -52.49 -0.33 2.84 16 34 H 0.11 2.05 8.06 -52.48 -0.42 1.62 16 35 H 0.12 2.33 7.41 -52.49 -0.39 1.94 16 LS Contribution 290.87 15.07 4.38 4.38 Total: -1.00 -27.51 290.87 -8.53 -36.04 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -4.79 Total: 7.85 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -3.44 Total: -23.89 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.35 Total: -36.49 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.51 -8.53 -36.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261070543.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.111 kcal (2) G-P(sol) polarization free energy of solvation -27.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds