Wall clock time and date at job start Mon Mar 30 2020 05:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50709 * 109.46976 * 2 1 4 4 C 1.37794 * 120.10777 * 265.01814 * 3 2 1 5 5 C 1.38785 * 120.66332 * 179.74016 * 4 3 2 6 6 C 1.36664 * 120.52945 * 0.50645 * 5 4 3 7 7 C 1.39586 * 119.76070 * 359.48066 * 6 5 4 8 8 C 1.46495 * 134.03142 * 180.25498 * 7 6 5 9 9 C 1.50696 * 126.49965 * 0.02562 * 8 7 6 10 10 H 1.08999 * 109.47592 * 324.99995 * 9 8 7 11 11 N 1.46905 * 109.47082 * 204.99720 * 9 8 7 12 12 C 1.50704 * 109.47164 * 85.00313 * 9 8 7 13 13 H 1.07993 * 119.99967 * 5.40946 * 12 9 8 14 14 C 1.37878 * 119.99627 * 185.41373 * 12 9 8 15 15 N 1.31516 * 120.00526 * 9.69323 * 14 12 9 16 16 Si 1.86802 * 119.99587 * 189.69214 * 14 12 9 17 17 H 1.48495 * 109.47198 * 84.99075 * 16 14 12 18 18 H 1.48503 * 109.46922 * 204.99229 * 16 14 12 19 19 H 1.48503 * 109.47082 * 324.98983 * 16 14 12 20 20 C 1.34241 * 106.99725 * 180.02562 * 8 7 6 21 21 N 1.36831 * 109.93638 * 359.97438 * 20 8 7 22 22 H 0.97004 * 125.06155 * 180.02562 * 21 20 8 23 23 C 1.37683 * 109.88011 * 0.02562 * 21 20 8 24 24 H 1.09004 * 109.47064 * 60.00099 * 1 2 3 25 25 H 1.08997 * 109.47421 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47041 * 300.00458 * 1 2 3 27 27 H 1.08994 * 109.47553 * 239.99787 * 2 1 3 28 28 H 1.08997 * 109.46915 * 119.99256 * 2 1 3 29 29 H 1.08001 * 119.66700 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.73446 * 180.28543 * 5 4 3 31 31 H 1.07998 * 120.11468 * 179.75775 * 6 5 4 32 32 H 1.00895 * 111.00225 * 177.35069 * 11 9 8 33 33 H 1.00899 * 110.99947 * 301.31059 * 11 9 8 34 34 H 0.96993 * 119.99794 * 179.97438 * 15 14 12 35 35 H 1.07997 * 125.02817 * 180.02562 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3603 2.0381 -1.1875 5 6 2.8189 3.3479 -1.2014 6 6 2.9629 4.0454 -0.0350 7 6 2.6361 3.4398 1.1794 8 6 2.6622 3.8801 2.5763 9 6 3.0930 5.2327 3.0819 10 1 3.9100 5.6078 2.4656 11 7 3.5451 5.1137 4.4746 12 6 1.9304 6.1890 3.0113 13 1 0.9538 5.8312 2.7209 14 6 2.1138 7.5209 3.3173 15 7 3.3287 7.9961 3.4842 16 14 0.6365 8.6503 3.4948 17 1 0.1022 8.5529 4.8768 18 1 1.0483 10.0506 3.2207 19 1 -0.4152 8.2454 2.5277 20 6 2.2296 2.8500 3.3206 21 7 1.9280 1.7862 2.5145 22 1 1.5962 0.9289 2.8242 23 6 2.1657 2.1138 1.1985 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 2.2559 1.4984 -2.1172 30 1 3.0673 3.8186 -2.1412 31 1 3.3240 5.0631 -0.0533 32 1 3.8798 5.9994 4.8231 33 1 2.8116 4.7476 5.0628 34 1 3.4576 8.9331 3.6991 35 1 2.1330 2.8599 4.3962 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261075536.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:59 Heat of formation + Delta-G solvation = 38.585652 kcal Electronic energy + Delta-G solvation = -17190.931330 eV Core-core repulsion = 14574.236140 eV Total energy + Delta-G solvation = -2616.695191 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.66673 -36.76861 -34.71030 -33.82615 -31.46646 -29.67428 -28.51588 -27.70256 -25.80464 -23.67931 -22.37732 -21.25506 -20.99623 -17.95903 -17.24360 -16.39222 -15.71087 -14.98705 -14.54287 -14.34166 -14.08697 -13.65673 -13.51920 -13.20408 -12.77476 -12.46413 -12.36166 -11.85673 -11.67867 -11.27718 -11.10634 -10.95312 -10.93528 -10.75622 -10.62271 -10.20448 -10.05724 -9.53973 -8.81255 -8.46042 -7.57682 -7.26757 -6.79849 -6.01169 -4.14753 1.70971 2.21245 3.26131 3.33483 3.36554 3.56072 3.75994 4.38148 4.51871 4.96615 5.04047 5.19582 5.40711 5.44407 5.56201 5.61322 5.67650 5.83891 5.87096 6.03572 6.13420 6.20742 6.25262 6.48077 6.55079 6.71524 6.90906 7.04060 7.21311 7.41439 7.43910 7.79623 7.83188 7.88838 8.20781 8.23170 8.76976 8.91716 9.08942 9.53090 10.96610 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028425 B = 0.006415 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.796527 B = 4363.754382 C = 4542.917379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 C -0.109 4.109 4 C -0.106 4.106 5 C -0.163 4.163 6 C -0.055 4.055 7 C -0.096 4.096 8 C -0.098 4.098 9 C 0.269 3.731 10 H 0.052 0.948 11 N -0.849 5.849 12 C -0.539 4.539 13 H 0.054 0.946 14 C 0.067 3.933 15 N -0.890 5.890 16 Si 0.889 3.111 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.018 3.982 21 N -0.602 5.602 22 H 0.404 0.596 23 C 0.100 3.900 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.346 0.654 33 H 0.309 0.691 34 H 0.263 0.737 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.097 -12.872 -4.836 14.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.112 4.112 4 C -0.125 4.125 5 C -0.183 4.183 6 C -0.073 4.073 7 C -0.102 4.102 8 C -0.105 4.105 9 C 0.159 3.841 10 H 0.070 0.930 11 N -0.376 5.376 12 C -0.579 4.579 13 H 0.072 0.928 14 C -0.135 4.135 15 N -0.528 5.528 16 Si 0.717 3.283 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.105 4.105 21 N -0.206 5.206 22 H 0.239 0.761 23 C -0.008 4.008 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.141 0.859 32 H 0.159 0.841 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.470 -13.296 -4.989 14.414 hybrid contribution -1.816 1.125 0.476 2.189 sum -4.286 -12.170 -4.513 13.669 Atomic orbital electron populations 1.21757 0.95305 1.00957 1.02332 1.20364 0.95703 0.93333 1.01945 1.18670 1.06170 0.95743 0.90595 1.20515 1.01007 0.95193 0.95818 1.20474 1.05194 0.95003 0.97620 1.20399 0.96862 0.99442 0.90621 1.19200 1.04103 0.92900 0.94011 1.20945 1.02859 0.96866 0.89821 1.17374 0.94406 0.85198 0.87104 0.93004 1.59477 1.39754 1.33594 1.04730 1.21807 0.96130 0.93281 1.46671 0.92794 1.25010 0.95662 0.97815 0.95043 1.69918 1.19944 1.14870 1.48099 0.86654 0.83264 0.79857 0.78506 1.20642 1.21245 1.19987 1.21393 1.05999 0.87121 0.95955 1.41605 1.60104 1.14462 1.04417 0.76072 1.18026 1.02921 0.95151 0.84724 0.92422 0.92929 0.92913 0.91290 0.92267 0.86828 0.86813 0.85918 0.84091 0.88203 0.92688 0.82123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.89 37.16 0.37 -1.22 16 2 C -0.08 -0.90 6.07 -27.88 -0.17 -1.07 16 3 C -0.11 -1.69 5.15 -104.47 -0.54 -2.23 16 4 C -0.11 -1.61 9.65 -39.54 -0.38 -1.99 16 5 C -0.16 -2.71 9.97 -39.95 -0.40 -3.11 16 6 C -0.05 -1.09 10.05 -39.65 -0.40 -1.48 16 7 C -0.10 -2.04 6.35 -105.14 -0.67 -2.71 16 8 C -0.10 -2.20 5.38 -102.71 -0.55 -2.75 16 9 C 0.27 6.79 3.10 -70.01 -0.22 6.57 16 10 H 0.05 1.48 8.09 -51.93 -0.42 1.06 16 11 N -0.85 -19.72 8.99 -6.65 -0.06 -19.78 16 12 C -0.54 -14.66 8.67 -34.44 -0.30 -14.96 16 13 H 0.05 1.52 7.76 -52.49 -0.41 1.11 16 14 C 0.07 1.83 5.27 -17.82 -0.09 1.74 16 15 N -0.89 -24.84 12.30 55.43 0.68 -24.16 16 16 Si 0.89 21.16 29.55 -169.99 -5.02 16.14 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 C 0.02 0.34 11.10 -16.73 -0.19 0.15 16 21 N -0.60 -9.84 6.07 -10.65 -0.06 -9.90 16 22 H 0.40 5.10 8.96 -40.82 -0.37 4.74 16 23 C 0.10 1.81 6.97 -83.99 -0.59 1.23 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.71 8.05 -51.93 -0.42 0.30 16 28 H 0.06 0.66 8.12 -51.93 -0.42 0.23 16 29 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 32 H 0.35 8.58 7.86 -39.29 -0.31 8.27 16 33 H 0.31 6.62 7.90 -39.29 -0.31 6.30 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.16 2.69 7.27 -52.49 -0.38 2.31 16 LS Contribution 296.79 15.07 4.47 4.47 Total: -1.00 -29.32 296.79 -8.82 -38.14 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.93 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -4.12 Total: -21.84 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.56 Total: -53.84 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.32 -8.82 -38.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261075536.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.726 kcal (2) G-P(sol) polarization free energy of solvation -29.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds