Wall clock time and date at job start Mon Mar 30 2020 05:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50709 * 109.46976 * 2 1 4 4 C 1.37794 * 120.10777 * 265.01814 * 3 2 1 5 5 C 1.38785 * 120.66332 * 179.74016 * 4 3 2 6 6 C 1.36664 * 120.52945 * 0.50645 * 5 4 3 7 7 C 1.39586 * 119.76070 * 359.48066 * 6 5 4 8 8 C 1.46495 * 134.03142 * 180.25498 * 7 6 5 9 9 C 1.50696 * 126.49965 * 0.02562 * 8 7 6 10 10 H 1.08999 * 109.47592 * 324.99995 * 9 8 7 11 11 N 1.46905 * 109.47082 * 204.99720 * 9 8 7 12 12 C 1.50704 * 109.47164 * 85.00313 * 9 8 7 13 13 H 1.07993 * 119.99967 * 5.40946 * 12 9 8 14 14 C 1.37878 * 119.99627 * 185.41373 * 12 9 8 15 15 N 1.31516 * 120.00526 * 9.69323 * 14 12 9 16 16 Si 1.86802 * 119.99587 * 189.69214 * 14 12 9 17 17 H 1.48495 * 109.47198 * 84.99075 * 16 14 12 18 18 H 1.48503 * 109.46922 * 204.99229 * 16 14 12 19 19 H 1.48503 * 109.47082 * 324.98983 * 16 14 12 20 20 C 1.34241 * 106.99725 * 180.02562 * 8 7 6 21 21 N 1.36831 * 109.93638 * 359.97438 * 20 8 7 22 22 H 0.97004 * 125.06155 * 180.02562 * 21 20 8 23 23 C 1.37683 * 109.88011 * 0.02562 * 21 20 8 24 24 H 1.09004 * 109.47064 * 60.00099 * 1 2 3 25 25 H 1.08997 * 109.47421 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47041 * 300.00458 * 1 2 3 27 27 H 1.08994 * 109.47553 * 239.99787 * 2 1 3 28 28 H 1.08997 * 109.46915 * 119.99256 * 2 1 3 29 29 H 1.08001 * 119.66700 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.73446 * 180.28543 * 5 4 3 31 31 H 1.07998 * 120.11468 * 179.75775 * 6 5 4 32 32 H 1.00895 * 111.00225 * 177.35069 * 11 9 8 33 33 H 1.00899 * 110.99947 * 301.31059 * 11 9 8 34 34 H 0.96993 * 119.99794 * 179.97438 * 15 14 12 35 35 H 1.07997 * 125.02817 * 180.02562 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3603 2.0381 -1.1875 5 6 2.8189 3.3479 -1.2014 6 6 2.9629 4.0454 -0.0350 7 6 2.6361 3.4398 1.1794 8 6 2.6622 3.8801 2.5763 9 6 3.0930 5.2327 3.0819 10 1 3.9100 5.6078 2.4656 11 7 3.5451 5.1137 4.4746 12 6 1.9304 6.1890 3.0113 13 1 0.9538 5.8312 2.7209 14 6 2.1138 7.5209 3.3173 15 7 3.3287 7.9961 3.4842 16 14 0.6365 8.6503 3.4948 17 1 0.1022 8.5529 4.8768 18 1 1.0483 10.0506 3.2207 19 1 -0.4152 8.2454 2.5277 20 6 2.2296 2.8500 3.3206 21 7 1.9280 1.7862 2.5145 22 1 1.5962 0.9289 2.8242 23 6 2.1657 2.1138 1.1985 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 2.2559 1.4984 -2.1172 30 1 3.0673 3.8186 -2.1412 31 1 3.3240 5.0631 -0.0533 32 1 3.8798 5.9994 4.8231 33 1 2.8116 4.7476 5.0628 34 1 3.4576 8.9331 3.6991 35 1 2.1330 2.8599 4.3962 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261075536.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:58 Heat of formation + Delta-G solvation = 20.000334 kcal Electronic energy + Delta-G solvation = -17191.737250 eV Core-core repulsion = 14574.236140 eV Total energy + Delta-G solvation = -2617.501110 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.07434 -38.11404 -36.54849 -35.04103 -33.43642 -31.07998 -29.81473 -29.16736 -27.83854 -24.78868 -24.22771 -22.59908 -22.25387 -19.58113 -18.62698 -18.49908 -17.12622 -16.58160 -16.19147 -15.64346 -15.36250 -15.28872 -14.88536 -14.59132 -14.46710 -14.02208 -13.55458 -13.34224 -13.06814 -12.86659 -12.79119 -12.66187 -12.27750 -12.22736 -12.03254 -11.77654 -11.70761 -11.28282 -10.67650 -10.14640 -9.21161 -8.96742 -8.38568 -7.99897 -6.31346 0.33490 0.84420 1.35906 1.37425 1.47072 2.01189 2.40049 2.43514 3.07101 3.09111 3.86729 4.02913 4.15691 4.34767 4.37892 4.45284 4.52384 4.54995 4.71426 4.80297 4.95846 5.04437 5.07893 5.13835 5.22627 5.32490 5.42365 5.63159 5.67340 5.77619 5.81690 5.96445 6.14147 6.16594 6.41345 6.71598 6.87783 6.94907 7.13837 7.41245 8.86582 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028425 B = 0.006415 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.796527 B = 4363.754382 C = 4542.917379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 C -0.100 4.100 4 C -0.107 4.107 5 C -0.152 4.152 6 C -0.097 4.097 7 C -0.134 4.134 8 C -0.155 4.155 9 C 0.280 3.720 10 H 0.001 0.999 11 N -0.837 5.837 12 C -0.551 4.551 13 H 0.039 0.961 14 C 0.024 3.976 15 N -0.915 5.915 16 Si 0.952 3.048 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.278 1.278 20 C 0.042 3.958 21 N -0.583 5.583 22 H 0.425 0.575 23 C 0.090 3.910 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.038 0.962 27 H 0.093 0.907 28 H 0.069 0.931 29 H 0.155 0.845 30 H 0.138 0.862 31 H 0.094 0.906 32 H 0.335 0.665 33 H 0.322 0.678 34 H 0.266 0.734 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.654 -15.441 -5.492 17.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.103 4.103 4 C -0.126 4.126 5 C -0.171 4.171 6 C -0.116 4.116 7 C -0.140 4.140 8 C -0.162 4.162 9 C 0.170 3.830 10 H 0.019 0.981 11 N -0.363 5.363 12 C -0.591 4.591 13 H 0.057 0.943 14 C -0.176 4.176 15 N -0.554 5.554 16 Si 0.778 3.222 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.204 1.204 20 C -0.083 4.083 21 N -0.188 5.188 22 H 0.264 0.736 23 C -0.018 4.018 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.057 0.943 27 H 0.111 0.889 28 H 0.088 0.912 29 H 0.172 0.828 30 H 0.156 0.844 31 H 0.113 0.887 32 H 0.147 0.853 33 H 0.132 0.868 34 H 0.075 0.925 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.042 -15.912 -5.644 17.361 hybrid contribution -1.312 1.847 0.602 2.344 sum -5.354 -14.066 -5.042 15.872 Atomic orbital electron populations 1.21737 0.94453 1.02388 1.01520 1.20465 0.96236 0.90650 1.03736 1.19205 1.04066 0.97516 0.89464 1.20994 0.99627 0.94506 0.97447 1.20797 1.03383 0.95692 0.97224 1.20404 0.99987 0.99090 0.92135 1.19481 1.05747 0.94914 0.93837 1.20771 1.07030 0.96800 0.91563 1.16990 0.91995 0.86955 0.87082 0.98058 1.59403 1.40019 1.32726 1.04150 1.21976 0.96045 0.94262 1.46817 0.94297 1.25710 0.98138 0.99078 0.94683 1.70027 1.21594 1.15219 1.48573 0.85676 0.79909 0.77952 0.78691 1.19439 1.20762 1.20357 1.21562 1.03335 0.86657 0.96732 1.41470 1.59082 1.14694 1.03595 0.73550 1.18258 1.03174 0.94251 0.86113 0.92704 0.90401 0.94326 0.88875 0.91197 0.82778 0.84404 0.88733 0.85308 0.86827 0.92528 0.79995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.89 71.98 0.71 -1.84 16 2 C -0.07 -1.41 6.07 29.85 0.18 -1.23 16 3 C -0.10 -2.82 5.15 -19.76 -0.10 -2.93 16 4 C -0.11 -2.93 9.65 22.30 0.22 -2.72 16 5 C -0.15 -4.94 9.97 22.03 0.22 -4.72 16 6 C -0.10 -4.08 10.05 22.23 0.22 -3.86 16 7 C -0.13 -5.90 6.35 -20.20 -0.13 -6.03 16 8 C -0.15 -7.19 5.38 -18.63 -0.10 -7.29 16 9 C 0.28 14.96 3.10 43.42 0.13 15.10 16 10 H 0.00 0.09 8.09 -2.39 -0.02 0.07 16 11 N -0.84 -40.24 8.99 -174.95 -1.57 -41.81 16 12 C -0.55 -31.29 8.67 25.60 0.22 -31.07 16 13 H 0.04 2.27 7.76 -2.91 -0.02 2.25 16 14 C 0.02 1.36 5.27 84.65 0.45 1.80 16 15 N -0.91 -52.88 12.30 21.45 0.26 -52.61 16 16 Si 0.95 44.22 29.55 68.60 2.03 46.25 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 C 0.04 1.57 11.10 83.00 0.92 2.49 16 21 N -0.58 -18.07 6.07 -187.62 -1.14 -19.21 16 22 H 0.43 9.47 8.96 -92.71 -0.83 8.64 16 23 C 0.09 3.18 6.97 39.03 0.27 3.45 16 24 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.09 1.41 8.05 -2.39 -0.02 1.39 16 28 H 0.07 1.23 8.12 -2.39 -0.02 1.21 16 29 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 30 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 31 H 0.09 4.30 8.06 -2.91 -0.02 4.28 16 32 H 0.34 17.29 7.86 -89.70 -0.71 16.58 16 33 H 0.32 13.92 7.90 -89.70 -0.71 13.21 16 34 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 35 H 0.18 5.83 7.27 -2.91 -0.02 5.81 16 Total: -1.00 -66.95 296.79 1.67 -65.28 By element: Atomic # 1 Polarization: 42.08 SS G_CDS: -1.13 Total: 40.96 kcal Atomic # 6 Polarization: -42.08 SS G_CDS: 3.22 Total: -38.86 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -2.45 Total: -113.63 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -66.95 1.67 -65.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261075536.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.282 kcal (2) G-P(sol) polarization free energy of solvation -66.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds