Wall clock time and date at job start Mon Mar 30 2020 05:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.47200 * 2 1 4 4 C 1.37786 * 120.11663 * 265.00137 * 3 2 1 5 5 C 1.38784 * 120.66949 * 179.97438 * 4 3 2 6 6 C 1.36657 * 120.52868 * 0.02562 * 5 4 3 7 7 C 1.39591 * 119.76300 * 359.97438 * 6 5 4 8 8 C 1.46488 * 134.03276 * 179.97438 * 7 6 5 9 9 C 1.50695 * 126.50525 * 0.02562 * 8 7 6 10 10 H 1.09002 * 109.47270 * 39.99991 * 9 8 7 11 11 N 1.46897 * 109.47855 * 159.99863 * 9 8 7 12 12 C 1.50696 * 109.47213 * 280.00133 * 9 8 7 13 13 H 1.08007 * 120.00060 * 335.14374 * 12 9 8 14 14 C 1.37883 * 120.00632 * 155.14457 * 12 9 8 15 15 N 1.31518 * 119.99203 * 7.63788 * 14 12 9 16 16 Si 1.86790 * 120.00329 * 187.63284 * 14 12 9 17 17 H 1.48495 * 109.47407 * 269.99999 * 16 14 12 18 18 H 1.48504 * 109.47165 * 30.00497 * 16 14 12 19 19 H 1.48505 * 109.47348 * 150.00007 * 16 14 12 20 20 C 1.34243 * 106.99940 * 180.28016 * 8 7 6 21 21 N 1.36833 * 109.93262 * 359.56731 * 20 8 7 22 22 H 0.97005 * 125.05907 * 180.17780 * 21 20 8 23 23 C 1.37689 * 109.87655 * 0.45054 * 21 20 8 24 24 H 1.09008 * 109.47046 * 60.00003 * 1 2 3 25 25 H 1.09004 * 109.47329 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47342 * 299.99752 * 1 2 3 27 27 H 1.09006 * 109.47415 * 240.00502 * 2 1 3 28 28 H 1.09000 * 109.47506 * 120.00453 * 2 1 3 29 29 H 1.08008 * 119.66032 * 359.95367 * 4 3 2 30 30 H 1.08005 * 119.73409 * 180.02562 * 5 4 3 31 31 H 1.07998 * 120.11795 * 179.97438 * 6 5 4 32 32 H 1.00905 * 110.99840 * 58.21659 * 11 9 8 33 33 H 1.00899 * 111.00679 * 182.17127 * 11 9 8 34 34 H 0.96991 * 120.00463 * 355.28521 * 15 14 12 35 35 H 1.08001 * 125.03354 * 179.74013 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3607 2.0380 -1.1873 5 6 2.8239 3.3462 -1.2007 6 6 2.9629 4.0454 -0.0348 7 6 2.6360 3.4396 1.1796 8 6 2.6625 3.8796 2.5766 9 6 3.0939 5.2320 3.0825 10 1 2.7265 6.0061 2.4088 11 7 2.5427 5.4509 4.4265 12 6 4.5986 5.2899 3.1411 13 1 5.1706 4.3792 3.2407 14 6 5.2452 6.5055 3.0677 15 7 4.5513 7.6222 3.0980 16 14 7.1067 6.5660 2.9254 17 1 7.7059 6.6101 4.2834 18 1 7.5882 5.3565 2.2109 19 1 7.5061 7.7797 2.1685 20 6 2.2350 2.8478 3.3213 21 7 1.9277 1.7861 2.5146 22 1 1.5959 0.9287 2.8242 23 6 2.1654 2.1138 1.1986 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.2568 1.4981 -2.1170 30 1 3.0765 3.8155 -2.1401 31 1 3.3243 5.0629 -0.0529 32 1 2.8455 4.7291 5.0634 33 1 2.7885 6.3658 4.7736 34 1 3.5819 7.5909 3.1029 35 1 2.1441 2.8555 4.3974 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261075540.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:01 Heat of formation + Delta-G solvation = 16.629100 kcal Electronic energy + Delta-G solvation = -17252.718562 eV Core-core repulsion = 14635.071264 eV Total energy + Delta-G solvation = -2617.647298 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.15055 -38.20746 -36.86862 -35.09859 -33.39897 -31.18133 -29.87229 -29.25851 -27.44089 -24.82141 -24.33274 -22.66329 -22.31815 -20.06414 -18.80670 -18.58458 -17.27333 -16.41292 -16.00002 -15.70528 -15.56162 -15.36593 -14.84752 -14.71291 -14.51726 -14.26285 -13.82688 -13.52076 -13.20044 -12.81549 -12.69084 -12.36362 -12.28453 -12.06338 -11.87504 -11.78225 -11.50242 -11.39111 -10.74552 -10.23156 -9.29884 -9.03488 -8.68875 -8.22043 -6.37296 0.27115 0.78328 1.47489 1.56509 1.74712 1.92937 2.35235 2.53199 3.02464 3.14748 3.80987 3.94139 4.09834 4.22691 4.28960 4.34722 4.45103 4.52063 4.63702 4.74802 4.78838 4.92430 5.05447 5.07044 5.13072 5.26874 5.38644 5.46231 5.70050 5.75140 5.86068 5.94812 6.01479 6.11599 6.32659 6.56639 6.63139 6.85863 6.89357 7.41806 8.72497 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029215 B = 0.006792 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.190762 B = 4121.560530 C = 4608.364365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.074 4.074 3 C -0.098 4.098 4 C -0.106 4.106 5 C -0.151 4.151 6 C -0.098 4.098 7 C -0.132 4.132 8 C -0.155 4.155 9 C 0.263 3.737 10 H 0.004 0.996 11 N -0.839 5.839 12 C -0.619 4.619 13 H 0.031 0.969 14 C -0.020 4.020 15 N -0.930 5.930 16 Si 1.111 2.889 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.042 3.958 21 N -0.582 5.582 22 H 0.426 0.574 23 C 0.090 3.910 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.039 0.961 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.156 0.844 30 H 0.138 0.862 31 H 0.090 0.910 32 H 0.328 0.672 33 H 0.326 0.674 34 H 0.260 0.740 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.942 -15.922 -5.482 17.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C -0.101 4.101 4 C -0.124 4.124 5 C -0.170 4.170 6 C -0.117 4.117 7 C -0.138 4.138 8 C -0.162 4.162 9 C 0.153 3.847 10 H 0.022 0.978 11 N -0.365 5.365 12 C -0.659 4.659 13 H 0.050 0.950 14 C -0.220 4.220 15 N -0.568 5.568 16 Si 0.934 3.066 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.207 1.207 20 C -0.083 4.083 21 N -0.187 5.187 22 H 0.265 0.735 23 C -0.018 4.018 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.058 0.942 27 H 0.111 0.889 28 H 0.087 0.913 29 H 0.174 0.826 30 H 0.156 0.844 31 H 0.108 0.892 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.070 0.930 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -5.459 -15.094 -5.794 17.065 hybrid contribution -0.279 -0.466 0.687 0.876 sum -5.738 -15.560 -5.107 17.353 Atomic orbital electron populations 1.21731 0.94184 1.02467 1.01626 1.20474 0.96457 0.90512 1.03712 1.19223 1.03976 0.97520 0.89396 1.21006 0.99478 0.94414 0.97540 1.20807 1.03184 0.95787 0.97200 1.20367 0.99822 0.99224 0.92263 1.19430 1.05565 0.95116 0.93684 1.20634 1.06568 0.97273 0.91763 1.17201 0.90993 0.88977 0.87523 0.97805 1.59452 1.65523 1.06713 1.04858 1.22757 0.93549 0.94582 1.54973 0.95014 1.27108 1.10616 0.91871 0.92399 1.70909 1.08475 1.29230 1.48189 0.82988 0.70144 0.75738 0.77691 1.19648 1.20786 1.20737 1.21559 1.03420 0.86579 0.96749 1.41458 1.58964 1.14784 1.03538 0.73454 1.18260 1.03134 0.94207 0.86161 0.92556 0.90390 0.94186 0.88882 0.91309 0.82597 0.84373 0.89201 0.86094 0.86360 0.92977 0.79953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.89 71.98 0.71 -1.72 16 2 C -0.07 -1.42 6.07 29.85 0.18 -1.24 16 3 C -0.10 -2.79 5.15 -19.77 -0.10 -2.89 16 4 C -0.11 -2.91 9.65 22.29 0.22 -2.70 16 5 C -0.15 -4.98 9.97 22.03 0.22 -4.76 16 6 C -0.10 -4.18 10.05 22.23 0.22 -3.96 16 7 C -0.13 -5.87 6.35 -20.20 -0.13 -6.00 16 8 C -0.16 -7.23 5.44 -18.63 -0.10 -7.34 16 9 C 0.26 13.89 2.84 43.42 0.12 14.02 16 10 H 0.00 0.24 7.05 -2.39 -0.02 0.22 16 11 N -0.84 -39.07 8.95 -174.97 -1.57 -40.64 16 12 C -0.62 -35.32 8.58 25.60 0.22 -35.10 16 13 H 0.03 1.86 7.82 -2.91 -0.02 1.84 16 14 C -0.02 -1.15 5.44 84.66 0.46 -0.69 16 15 N -0.93 -56.32 13.62 21.45 0.29 -56.02 16 16 Si 1.11 51.45 29.91 68.60 2.05 53.50 16 17 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 C 0.04 1.56 11.06 83.00 0.92 2.48 16 21 N -0.58 -18.02 6.07 -187.61 -1.14 -19.16 16 22 H 0.43 9.44 8.96 -92.70 -0.83 8.61 16 23 C 0.09 3.20 6.97 39.03 0.27 3.47 16 24 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.09 1.41 8.05 -2.38 -0.02 1.40 16 28 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 29 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 30 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 31 H 0.09 4.22 8.06 -2.91 -0.02 4.20 16 32 H 0.33 13.83 7.91 -89.69 -0.71 13.12 16 33 H 0.33 15.99 8.45 -89.69 -0.76 15.23 16 34 H 0.26 15.94 6.27 -92.71 -0.58 15.36 16 35 H 0.18 5.81 7.25 -2.91 -0.02 5.79 16 Total: -1.00 -69.33 295.83 1.87 -67.46 By element: Atomic # 1 Polarization: 42.27 SS G_CDS: -0.99 Total: 41.29 kcal Atomic # 6 Polarization: -49.65 SS G_CDS: 3.21 Total: -46.44 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -2.41 Total: -115.81 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.05 Total: 53.50 kcal Total: -69.33 1.87 -67.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261075540.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.092 kcal (2) G-P(sol) polarization free energy of solvation -69.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds