Wall clock time and date at job start Mon Mar 30 2020 05:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35828 * 126.38681 * 2 1 4 4 C 1.50706 * 125.66478 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.46971 * 120.26961 * 4 3 2 6 6 C 1.53003 * 109.47053 * 240.27016 * 4 3 2 7 7 N 1.32856 * 108.67430 * 180.26271 * 3 2 1 8 8 C 1.33247 * 109.18800 * 359.77260 * 7 3 2 9 9 C 1.39785 * 131.54991 * 179.97438 * 8 7 3 10 10 C 1.40542 * 119.00920 * 180.02562 * 9 8 7 11 11 C 1.40512 * 120.76673 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99949 * 336.19721 * 11 10 9 13 13 C 1.39962 * 119.99661 * 156.19193 * 11 10 9 14 14 N 1.30811 * 120.00513 * 343.12628 * 13 11 10 15 15 Si 1.86809 * 119.99865 * 163.12392 * 13 11 10 16 16 H 1.48504 * 109.46858 * 60.00044 * 15 13 11 17 17 H 1.48499 * 109.46923 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46735 * 300.00043 * 15 13 11 19 19 C 1.46842 * 118.46366 * 0.02562 * 10 9 8 20 20 C 1.34146 * 119.40027 * 359.97438 * 19 10 9 21 21 N 1.36802 * 126.39150 * 179.87844 * 2 1 3 22 22 H 1.09007 * 109.46949 * 270.15130 * 1 2 3 23 23 H 1.08998 * 109.47189 * 30.14638 * 1 2 3 24 24 H 1.08995 * 109.47196 * 150.15195 * 1 2 3 25 25 H 1.08998 * 109.46856 * 0.27132 * 4 3 2 26 26 H 1.08998 * 109.46890 * 300.00080 * 5 4 3 27 27 H 1.08998 * 109.47191 * 60.00376 * 5 4 3 28 28 H 1.09001 * 109.46814 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.47190 * 59.99959 * 6 4 3 30 30 H 1.08999 * 109.46781 * 180.02562 * 6 4 3 31 31 H 1.09000 * 109.46895 * 299.99619 * 6 4 3 32 32 H 1.08002 * 120.49531 * 0.02562 * 9 8 7 33 33 H 0.97005 * 120.00320 * 180.02562 * 14 13 11 34 34 H 1.07992 * 120.30344 * 180.02562 * 19 10 9 35 35 H 1.08002 * 119.40049 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3128 1.0935 0.0000 4 6 1.8484 2.5272 0.0005 5 6 2.3834 3.2361 1.2464 6 6 2.3713 3.2331 -1.2521 7 7 3.5783 0.6893 -0.0058 8 6 3.6127 -0.6428 -0.0045 9 6 4.6823 -1.5427 -0.0093 10 6 4.4126 -2.9220 -0.0069 11 6 5.4595 -3.8591 -0.0110 12 1 6.4309 -3.5819 -0.3932 13 6 5.2436 -5.1517 0.4804 14 7 4.2033 -5.3998 1.2337 15 14 6.4409 -6.5228 0.0604 16 1 7.7934 -6.1697 0.5618 17 1 5.9902 -7.7860 0.6979 18 1 6.4904 -6.7025 -1.4129 19 6 3.0114 -3.3610 -0.0001 20 6 2.0335 -2.4427 0.0042 21 7 2.3187 -1.1012 0.0023 22 1 -0.3633 0.0027 1.0277 23 1 -0.3633 0.8886 -0.5161 24 1 -0.3633 -0.8913 -0.5114 25 1 0.7588 2.5561 0.0058 26 1 2.0108 2.7331 2.1387 27 1 3.4730 3.2071 1.2411 28 1 2.0479 4.2731 1.2465 29 1 1.9902 2.7281 -2.1396 30 1 2.0358 4.2702 -1.2514 31 1 3.4609 3.2042 -1.2573 32 1 5.7008 -1.1834 -0.0147 33 1 4.0538 -6.2956 1.5746 34 1 2.7702 -4.4137 0.0023 35 1 1.0029 -2.7657 0.0097 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261076679.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:49 Heat of formation + Delta-G solvation = 49.846788 kcal Electronic energy + Delta-G solvation = -17141.156506 eV Core-core repulsion = 14524.949635 eV Total energy + Delta-G solvation = -2616.206871 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.30208 -36.61019 -34.79637 -33.25384 -32.31968 -30.07831 -28.38365 -26.95746 -26.71371 -24.50482 -22.39288 -21.30976 -20.32385 -18.66062 -17.44530 -16.05103 -15.50387 -15.20223 -14.74208 -14.14844 -13.91567 -13.33135 -13.19259 -12.73064 -12.62497 -12.43859 -12.12926 -11.92452 -11.77190 -11.40982 -11.32677 -11.15111 -10.89494 -10.82207 -10.54500 -10.36677 -10.11963 -9.93793 -9.72105 -8.90254 -8.72565 -7.46330 -7.17619 -6.65455 -4.58769 2.27165 2.57396 2.91540 2.93962 3.01917 3.69852 3.88632 3.92963 4.36648 5.21346 5.29599 5.31639 5.56564 5.66106 5.66415 5.72198 5.86167 5.98676 6.02264 6.11130 6.23578 6.28162 6.29522 6.39605 6.60856 6.67556 6.68114 6.77551 6.82093 6.85358 7.11777 7.52240 7.61446 7.77040 7.94030 8.12076 8.42168 8.50642 8.66443 9.27489 9.80957 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.044281 B = 0.005550 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.168001 B = 5043.603393 C = 5421.759923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.143 4.143 3 C 0.064 3.936 4 C -0.008 4.008 5 C -0.135 4.135 6 C -0.136 4.136 7 N -0.552 5.552 8 C 0.298 3.702 9 C -0.294 4.294 10 C 0.126 3.874 11 C -0.432 4.432 12 H 0.090 0.910 13 C 0.075 3.925 14 N -0.785 5.785 15 Si 0.919 3.081 16 H -0.261 1.261 17 H -0.276 1.276 18 H -0.260 1.260 19 C -0.112 4.112 20 C 0.018 3.982 21 N -0.384 5.384 22 H 0.052 0.948 23 H 0.066 0.934 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.117 0.883 33 H 0.289 0.711 34 H 0.149 0.851 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.419 3.799 -1.552 6.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.254 4.254 3 C -0.070 4.070 4 C -0.028 4.028 5 C -0.193 4.193 6 C -0.193 4.193 7 N -0.274 5.274 8 C 0.059 3.941 9 C -0.320 4.320 10 C 0.119 3.881 11 C -0.462 4.462 12 H 0.108 0.892 13 C -0.145 4.145 14 N -0.409 5.409 15 Si 0.742 3.258 16 H -0.185 1.185 17 H -0.200 1.200 18 H -0.184 1.184 19 C -0.134 4.134 20 C -0.102 4.102 21 N -0.058 5.058 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.135 0.865 33 H 0.100 0.900 34 H 0.166 0.834 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.970 4.149 -1.406 6.625 hybrid contribution -0.317 -1.423 0.000 1.458 sum -5.287 2.727 -1.406 6.113 Atomic orbital electron populations 1.19861 0.88972 1.01457 1.00792 1.20424 0.93107 0.85866 1.25961 1.20124 0.89649 0.93447 1.03807 1.19369 0.98685 0.89109 0.95597 1.21717 1.02123 0.98455 0.97017 1.21726 1.02166 0.98480 0.96965 1.70541 1.19947 1.06837 1.30050 1.20651 0.83550 0.89726 1.00159 1.19803 0.94877 0.90043 1.27244 1.18499 0.91346 0.91229 0.87033 1.19453 0.98338 0.94431 1.33946 0.89214 1.26105 0.96084 1.00239 0.92105 1.69742 1.25985 1.23636 1.21565 0.86166 0.80787 0.78591 0.80212 1.18501 1.20046 1.18422 1.22320 0.92312 0.98959 0.99788 1.21078 0.99592 0.81189 1.08296 1.42379 1.08379 1.04487 1.50591 0.92933 0.91509 0.93128 0.91121 0.93232 0.91951 0.93321 0.93259 0.93326 0.91950 0.86472 0.90017 0.83401 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.85 9.91 36.01 0.36 -0.49 16 2 C -0.14 -3.03 7.03 -81.24 -0.57 -3.60 16 3 C 0.06 1.37 5.57 -83.01 -0.46 0.90 16 4 C -0.01 -0.13 3.27 -91.77 -0.30 -0.43 16 5 C -0.14 -2.09 9.18 37.16 0.34 -1.75 16 6 C -0.14 -2.07 9.18 37.16 0.34 -1.73 16 7 N -0.55 -13.66 11.32 -9.07 -0.10 -13.77 16 8 C 0.30 7.70 7.75 -155.70 -1.21 6.49 16 9 C -0.29 -7.67 9.94 -38.14 -0.38 -8.05 16 10 C 0.13 3.22 5.72 -104.69 -0.60 2.63 16 11 C -0.43 -10.61 9.06 -38.08 -0.34 -10.95 16 12 H 0.09 2.12 7.90 -52.49 -0.41 1.71 16 13 C 0.08 1.70 5.21 -17.34 -0.09 1.61 16 14 N -0.78 -18.10 10.87 55.55 0.60 -17.50 16 15 Si 0.92 16.88 29.59 -169.99 -5.03 11.85 16 16 H -0.26 -4.80 7.11 56.52 0.40 -4.39 16 17 H -0.28 -4.91 7.11 56.52 0.40 -4.51 16 18 H -0.26 -4.75 7.11 56.52 0.40 -4.34 16 19 C -0.11 -2.64 8.81 -37.54 -0.33 -2.97 16 20 C 0.02 0.40 10.76 -16.61 -0.18 0.22 16 21 N -0.38 -9.10 2.96 -58.42 -0.17 -9.28 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.07 0.92 7.16 -51.93 -0.37 0.55 16 24 H 0.05 0.76 8.06 -51.93 -0.42 0.34 16 25 H 0.07 1.03 6.79 -51.93 -0.35 0.68 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.12 2.99 8.06 -52.49 -0.42 2.57 16 33 H 0.29 6.00 8.30 -40.82 -0.34 5.66 16 34 H 0.15 3.37 6.27 -52.49 -0.33 3.04 16 35 H 0.13 2.45 7.97 -52.49 -0.42 2.03 16 LS Contribution 294.93 15.07 4.44 4.44 Total: -1.00 -27.87 294.93 -8.50 -36.37 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -4.82 Total: 6.00 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -3.42 Total: -18.12 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.33 Total: -40.54 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.85 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.87 -8.50 -36.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076679.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.218 kcal (2) G-P(sol) polarization free energy of solvation -27.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds