Wall clock time and date at job start Mon Mar 30 2020 05:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35828 * 126.38681 * 2 1 4 4 C 1.50706 * 125.66478 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.46971 * 120.26961 * 4 3 2 6 6 C 1.53003 * 109.47053 * 240.27016 * 4 3 2 7 7 N 1.32856 * 108.67430 * 180.26271 * 3 2 1 8 8 C 1.33247 * 109.18800 * 359.77260 * 7 3 2 9 9 C 1.39785 * 131.54991 * 179.97438 * 8 7 3 10 10 C 1.40542 * 119.00920 * 180.02562 * 9 8 7 11 11 C 1.40512 * 120.76673 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99949 * 336.19721 * 11 10 9 13 13 C 1.39962 * 119.99661 * 156.19193 * 11 10 9 14 14 N 1.30811 * 120.00513 * 343.12628 * 13 11 10 15 15 Si 1.86809 * 119.99865 * 163.12392 * 13 11 10 16 16 H 1.48504 * 109.46858 * 60.00044 * 15 13 11 17 17 H 1.48499 * 109.46923 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46735 * 300.00043 * 15 13 11 19 19 C 1.46842 * 118.46366 * 0.02562 * 10 9 8 20 20 C 1.34146 * 119.40027 * 359.97438 * 19 10 9 21 21 N 1.36802 * 126.39150 * 179.87844 * 2 1 3 22 22 H 1.09007 * 109.46949 * 270.15130 * 1 2 3 23 23 H 1.08998 * 109.47189 * 30.14638 * 1 2 3 24 24 H 1.08995 * 109.47196 * 150.15195 * 1 2 3 25 25 H 1.08998 * 109.46856 * 0.27132 * 4 3 2 26 26 H 1.08998 * 109.46890 * 300.00080 * 5 4 3 27 27 H 1.08998 * 109.47191 * 60.00376 * 5 4 3 28 28 H 1.09001 * 109.46814 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.47190 * 59.99959 * 6 4 3 30 30 H 1.08999 * 109.46781 * 180.02562 * 6 4 3 31 31 H 1.09000 * 109.46895 * 299.99619 * 6 4 3 32 32 H 1.08002 * 120.49531 * 0.02562 * 9 8 7 33 33 H 0.97005 * 120.00320 * 180.02562 * 14 13 11 34 34 H 1.07992 * 120.30344 * 180.02562 * 19 10 9 35 35 H 1.08002 * 119.40049 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3128 1.0935 0.0000 4 6 1.8484 2.5272 0.0005 5 6 2.3834 3.2361 1.2464 6 6 2.3713 3.2331 -1.2521 7 7 3.5783 0.6893 -0.0058 8 6 3.6127 -0.6428 -0.0045 9 6 4.6823 -1.5427 -0.0093 10 6 4.4126 -2.9220 -0.0069 11 6 5.4595 -3.8591 -0.0110 12 1 6.4309 -3.5819 -0.3932 13 6 5.2436 -5.1517 0.4804 14 7 4.2033 -5.3998 1.2337 15 14 6.4409 -6.5228 0.0604 16 1 7.7934 -6.1697 0.5618 17 1 5.9902 -7.7860 0.6979 18 1 6.4904 -6.7025 -1.4129 19 6 3.0114 -3.3610 -0.0001 20 6 2.0335 -2.4427 0.0042 21 7 2.3187 -1.1012 0.0023 22 1 -0.3633 0.0027 1.0277 23 1 -0.3633 0.8886 -0.5161 24 1 -0.3633 -0.8913 -0.5114 25 1 0.7588 2.5561 0.0058 26 1 2.0108 2.7331 2.1387 27 1 3.4730 3.2071 1.2411 28 1 2.0479 4.2731 1.2465 29 1 1.9902 2.7281 -2.1396 30 1 2.0358 4.2702 -1.2514 31 1 3.4609 3.2042 -1.2573 32 1 5.7008 -1.1834 -0.0147 33 1 4.0538 -6.2956 1.5746 34 1 2.7702 -4.4137 0.0023 35 1 1.0029 -2.7657 0.0097 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261076679.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:48 Heat of formation + Delta-G solvation = 36.370582 kcal Electronic energy + Delta-G solvation = -17141.740879 eV Core-core repulsion = 14524.949635 eV Total energy + Delta-G solvation = -2616.791243 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.04490 -38.29933 -36.37790 -34.88963 -34.04396 -31.66923 -30.15655 -28.68296 -27.92697 -26.12181 -24.03083 -23.08840 -21.97799 -20.24320 -19.24119 -17.77174 -17.14062 -16.92306 -16.45667 -15.69156 -15.40742 -14.88050 -14.76353 -14.20069 -14.04217 -13.77571 -13.67791 -13.29539 -13.12216 -13.00719 -12.93299 -12.79726 -12.28447 -12.20291 -12.06396 -11.74524 -11.71514 -11.66849 -11.44741 -10.69819 -10.47829 -9.23701 -8.92236 -8.43107 -6.46012 0.46462 0.82859 1.40034 1.49942 1.53784 2.15074 2.20691 2.23027 2.57169 3.41516 3.76166 3.81915 4.04823 4.21281 4.39892 4.42684 4.47309 4.58821 4.75635 4.81342 4.86412 4.88413 4.97755 5.01514 5.04337 5.06986 5.13626 5.23165 5.32212 5.44840 5.53052 5.65637 5.79709 5.96968 6.24445 6.26484 6.58038 6.67467 6.85763 7.51141 8.09225 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.044281 B = 0.005550 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.168001 B = 5043.603393 C = 5421.759923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.145 4.145 3 C 0.044 3.956 4 C -0.010 4.010 5 C -0.130 4.130 6 C -0.130 4.130 7 N -0.579 5.579 8 C 0.265 3.735 9 C -0.334 4.334 10 C 0.106 3.894 11 C -0.460 4.460 12 H 0.085 0.915 13 C 0.044 3.956 14 N -0.802 5.802 15 Si 0.993 3.007 16 H -0.262 1.262 17 H -0.259 1.259 18 H -0.257 1.257 19 C -0.129 4.129 20 C 0.026 3.974 21 N -0.394 5.394 22 H 0.068 0.932 23 H 0.094 0.906 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.042 0.958 27 H 0.035 0.965 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.035 0.965 32 H 0.099 0.901 33 H 0.302 0.698 34 H 0.154 0.846 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.625 3.560 -1.600 8.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.255 4.255 3 C -0.088 4.088 4 C -0.029 4.029 5 C -0.188 4.188 6 C -0.188 4.188 7 N -0.302 5.302 8 C 0.025 3.975 9 C -0.360 4.360 10 C 0.099 3.901 11 C -0.489 4.489 12 H 0.103 0.897 13 C -0.176 4.176 14 N -0.426 5.426 15 Si 0.812 3.188 16 H -0.186 1.186 17 H -0.183 1.183 18 H -0.181 1.181 19 C -0.150 4.150 20 C -0.093 4.093 21 N -0.069 5.069 22 H 0.087 0.913 23 H 0.113 0.887 24 H 0.081 0.919 25 H 0.120 0.880 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.054 0.946 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.171 0.829 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -7.207 3.934 -1.446 8.337 hybrid contribution 0.310 -1.296 0.053 1.333 sum -6.897 2.638 -1.393 7.514 Atomic orbital electron populations 1.20048 0.84909 1.03472 1.02407 1.21450 0.95563 0.84877 1.23581 1.21028 0.88513 0.96102 1.03193 1.19611 1.00407 0.86331 0.96543 1.21677 1.00367 1.00528 0.96233 1.21681 1.00418 1.00525 0.96159 1.70510 1.22366 1.06665 1.30633 1.20749 0.84636 0.90332 1.01785 1.19757 0.94542 0.90999 1.30707 1.18830 0.92947 0.91166 0.87195 1.19720 0.98235 0.95918 1.35023 0.89717 1.26912 0.97895 1.01593 0.91183 1.69740 1.26865 1.24964 1.21001 0.85074 0.78091 0.75612 0.80010 1.18581 1.18307 1.18068 1.22342 0.91742 0.99562 1.01356 1.21595 1.01122 0.80546 1.06040 1.42648 1.08086 1.05526 1.50662 0.91331 0.88731 0.91912 0.88034 0.93866 0.94613 0.89594 0.93651 0.89641 0.94604 0.88305 0.88689 0.82856 0.80990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.44 9.91 71.24 0.71 -0.73 16 2 C -0.14 -5.94 7.03 41.22 0.29 -5.65 16 3 C 0.04 1.87 5.57 41.85 0.23 2.10 16 4 C -0.01 -0.30 3.27 -11.54 -0.04 -0.34 16 5 C -0.13 -3.80 9.18 71.98 0.66 -3.14 16 6 C -0.13 -3.73 9.18 71.98 0.66 -3.07 16 7 N -0.58 -29.75 11.32 -182.62 -2.07 -31.81 16 8 C 0.26 14.31 7.75 133.54 1.04 15.35 16 9 C -0.33 -18.71 9.94 23.21 0.23 -18.48 16 10 C 0.11 5.67 5.72 -19.91 -0.11 5.56 16 11 C -0.46 -23.51 9.06 23.24 0.21 -23.30 16 12 H 0.08 4.24 7.90 -2.91 -0.02 4.22 16 13 C 0.04 1.97 5.21 85.26 0.44 2.41 16 14 N -0.80 -36.69 10.87 21.83 0.24 -36.45 16 15 Si 0.99 34.01 29.59 68.60 2.03 36.04 16 16 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 17 H -0.26 -8.16 7.11 99.48 0.71 -7.45 16 18 H -0.26 -8.63 7.11 99.48 0.71 -7.93 16 19 C -0.13 -6.16 8.81 23.59 0.21 -5.95 16 20 C 0.03 1.14 10.76 82.93 0.89 2.03 16 21 N -0.39 -18.75 2.96 -338.75 -1.00 -19.75 16 22 H 0.07 1.76 8.14 -2.38 -0.02 1.75 16 23 H 0.09 2.16 7.16 -2.39 -0.02 2.14 16 24 H 0.06 1.64 8.06 -2.39 -0.02 1.62 16 25 H 0.10 2.53 6.79 -2.39 -0.02 2.51 16 26 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.09 1.84 8.14 -2.39 -0.02 1.83 16 29 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 5.59 8.06 -2.91 -0.02 5.57 16 33 H 0.30 12.14 8.30 -92.70 -0.77 11.37 16 34 H 0.15 7.03 6.27 -2.91 -0.02 7.01 16 35 H 0.17 5.95 7.97 -2.91 -0.02 5.93 16 Total: -1.00 -63.86 294.93 5.69 -58.17 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 1.08 Total: 27.03 kcal Atomic # 6 Polarization: -38.63 SS G_CDS: 5.42 Total: -33.21 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -2.83 Total: -88.02 kcal Atomic # 14 Polarization: 34.01 SS G_CDS: 2.03 Total: 36.04 kcal Total: -63.86 5.69 -58.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076679.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.538 kcal (2) G-P(sol) polarization free energy of solvation -63.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds