Wall clock time and date at job start Mon Mar 30 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47057 * 2 1 4 4 C 1.53002 * 109.47093 * 119.99924 * 2 1 3 5 5 C 1.50706 * 109.46974 * 65.00013 * 4 2 1 6 6 N 1.31058 * 125.32368 * 267.45799 * 5 4 2 7 7 C 1.33192 * 109.98830 * 179.97438 * 6 5 4 8 8 C 1.38825 * 107.52104 * 0.02562 * 7 6 5 9 9 C 1.40057 * 133.49862 * 180.02562 * 8 7 6 10 10 C 1.38460 * 119.83171 * 179.97438 * 9 8 7 11 11 C 1.38619 * 119.94643 * 0.02562 * 10 9 8 12 12 C 1.40053 * 120.07848 * 359.97438 * 11 10 9 13 13 C 1.39244 * 120.03665 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99990 * 145.01411 * 13 12 11 15 15 C 1.40122 * 120.00117 * 325.00758 * 13 12 11 16 16 N 1.30790 * 120.00007 * 163.96941 * 15 13 12 17 17 Si 1.86801 * 120.00235 * 343.96645 * 15 13 12 18 18 H 1.48504 * 109.47166 * 86.89617 * 17 15 13 19 19 H 1.48501 * 109.47514 * 206.89820 * 17 15 13 20 20 H 1.48501 * 109.46914 * 326.89614 * 17 15 13 21 21 N 1.35619 * 125.32106 * 87.42850 * 5 4 2 22 22 H 1.09000 * 109.47253 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46999 * 299.99584 * 1 2 3 24 24 H 1.08994 * 109.46753 * 59.99777 * 1 2 3 25 25 H 1.08996 * 109.47074 * 239.99784 * 2 1 3 26 26 H 1.08995 * 109.46939 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47205 * 300.00464 * 3 2 1 28 28 H 1.09004 * 109.46876 * 60.00341 * 3 2 1 29 29 H 1.09002 * 109.47161 * 305.00469 * 4 2 1 30 30 H 1.08996 * 109.47336 * 184.99815 * 4 2 1 31 31 H 1.07994 * 126.23536 * 180.02562 * 7 6 5 32 32 H 1.07999 * 120.08596 * 0.02562 * 9 8 7 33 33 H 1.08004 * 120.03048 * 180.27549 * 10 9 8 34 34 H 1.08004 * 119.96198 * 180.02562 * 11 10 9 35 35 H 0.96999 * 119.99770 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6414 -2.1733 1.1889 6 7 0.5493 -2.6814 1.7055 7 6 0.5029 -3.9921 1.4734 8 6 1.6457 -4.3313 0.7619 9 6 2.1379 -5.5368 0.2461 10 6 3.3422 -5.5530 -0.4370 11 6 4.0568 -4.3775 -0.6077 12 6 3.5618 -3.1738 -0.0907 13 6 4.2805 -1.9936 -0.2623 14 1 3.7582 -1.0595 -0.4079 15 6 5.6814 -2.0178 -0.2459 16 7 6.3585 -0.9994 -0.7098 17 14 6.5821 -3.5043 0.4385 18 1 6.7591 -4.5139 -0.6361 19 1 7.9124 -3.0857 0.9485 20 1 5.7905 -4.0953 1.5473 21 7 2.3563 -3.1586 0.5910 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3632 0.5139 -0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6054 -0.2618 2.1370 30 1 3.1263 -0.6444 1.2952 31 1 -0.2809 -4.6678 1.7824 32 1 1.5792 -6.4513 0.3800 33 1 3.7226 -6.4801 -0.8399 34 1 4.9960 -4.3899 -1.1408 35 1 7.3283 -1.0164 -0.6988 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261076691.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:44 Heat of formation + Delta-G solvation = 51.104731 kcal Electronic energy + Delta-G solvation = -17914.294988 eV Core-core repulsion = 15298.142665 eV Total energy + Delta-G solvation = -2616.152323 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 3.16 seconds Orbital eigenvalues (eV) -41.45376 -36.45952 -35.86238 -33.84813 -32.14781 -30.09294 -28.59925 -26.79172 -26.52984 -24.17046 -22.32856 -21.35692 -20.06882 -19.24645 -17.83360 -16.25099 -15.65037 -15.03816 -14.78484 -14.61049 -14.07919 -13.68632 -13.32065 -13.08983 -12.87731 -12.38492 -11.92414 -11.79720 -11.71929 -11.53262 -11.28065 -10.97977 -10.66028 -10.40668 -10.28151 -10.26602 -10.08254 -10.05867 -9.58333 -9.29178 -9.20632 -8.02570 -7.40170 -6.53081 -4.85164 1.98666 2.46057 2.89353 2.96865 3.07904 3.68652 3.80237 3.94623 4.27845 4.85778 5.23692 5.44831 5.49991 5.70724 5.75451 5.94017 6.02999 6.07979 6.19171 6.25047 6.29433 6.31583 6.35631 6.46017 6.52793 6.57580 6.65203 6.84158 6.84999 6.90706 7.01200 7.31105 7.39950 7.58414 7.77773 7.82796 8.00010 8.13372 8.57477 9.03511 9.56936 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.018013 B = 0.012466 C = 0.008032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.100567 B = 2245.606964 C = 3485.135968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.024 4.024 5 C 0.146 3.854 6 N -0.458 5.458 7 C -0.105 4.105 8 C 0.066 3.934 9 C -0.251 4.251 10 C -0.035 4.035 11 C -0.334 4.334 12 C 0.269 3.731 13 C -0.439 4.439 14 H 0.118 0.882 15 C 0.093 3.907 16 N -0.773 5.773 17 Si 0.920 3.080 18 H -0.259 1.259 19 H -0.286 1.286 20 H -0.249 1.249 21 N -0.376 5.376 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.159 0.841 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.124 0.876 35 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.568 0.182 0.517 1.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 C -0.201 4.201 4 C -0.062 4.062 5 C -0.107 4.107 6 N -0.173 5.173 7 C -0.256 4.256 8 C -0.045 4.045 9 C -0.272 4.272 10 C -0.057 4.057 11 C -0.355 4.355 12 C 0.167 3.833 13 C -0.468 4.468 14 H 0.136 0.864 15 C -0.132 4.132 16 N -0.394 5.394 17 Si 0.745 3.255 18 H -0.185 1.185 19 H -0.213 1.213 20 H -0.172 1.172 21 N -0.050 5.050 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.176 0.824 32 H 0.133 0.867 33 H 0.124 0.876 34 H 0.141 0.859 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.950 0.973 0.904 2.359 hybrid contribution 1.073 -1.201 -0.333 1.645 sum -0.877 -0.228 0.570 1.070 Atomic orbital electron populations 1.21792 0.95352 1.02221 1.00355 1.21082 0.95774 0.95688 0.98461 1.21802 1.01554 0.95752 1.00944 1.20095 1.02165 0.85893 0.98093 1.22698 0.91190 0.92299 1.04543 1.69645 1.17676 1.09235 1.20723 1.22092 1.00012 0.92345 1.11169 1.19557 0.94624 0.87129 1.03193 1.19826 1.00325 0.94775 1.12279 1.20728 0.93475 0.96773 0.94679 1.20556 1.05877 0.91871 1.17204 1.18000 0.81162 0.95261 0.88876 1.19255 0.91787 0.95665 1.40105 0.86418 1.26146 0.97310 0.97914 0.91856 1.69576 1.10350 1.30359 1.29148 0.86129 0.77790 0.80243 0.81325 1.18483 1.21258 1.17193 1.43521 1.17062 1.08461 1.35913 0.92118 0.93048 0.93864 0.91131 0.92123 0.93141 0.93082 0.90598 0.88959 0.82363 0.86694 0.87642 0.85893 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.01 37.16 0.33 -2.02 16 2 C -0.09 -1.63 2.31 -90.61 -0.21 -1.84 16 3 C -0.14 -2.20 9.19 37.16 0.34 -1.86 16 4 C -0.02 -0.47 4.36 -27.88 -0.12 -0.59 16 5 C 0.15 3.35 6.37 -154.42 -0.98 2.37 16 6 N -0.46 -10.50 10.61 -9.79 -0.10 -10.60 16 7 C -0.11 -2.34 12.04 -16.74 -0.20 -2.54 16 8 C 0.07 1.54 6.80 -84.10 -0.57 0.97 16 9 C -0.25 -5.39 10.14 -38.82 -0.39 -5.78 16 10 C -0.04 -0.74 10.08 -39.36 -0.40 -1.14 16 11 C -0.33 -7.71 7.24 -38.76 -0.28 -7.99 16 12 C 0.27 6.56 5.87 -83.80 -0.49 6.07 16 13 C -0.44 -10.58 7.92 -38.50 -0.30 -10.89 16 14 H 0.12 2.87 4.66 -52.48 -0.24 2.62 16 15 C 0.09 2.15 5.39 -17.29 -0.09 2.06 16 16 N -0.77 -17.86 13.93 55.56 0.77 -17.09 16 17 Si 0.92 19.10 24.77 -169.99 -4.21 14.89 16 18 H -0.26 -5.20 6.41 56.52 0.36 -4.84 16 19 H -0.29 -5.64 7.11 56.52 0.40 -5.23 16 20 H -0.25 -5.54 7.11 56.52 0.40 -5.14 16 21 N -0.38 -9.12 3.01 -55.58 -0.17 -9.28 16 22 H 0.06 1.16 6.92 -51.93 -0.36 0.80 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.07 1.43 7.17 -51.93 -0.37 1.06 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.09 1.92 5.97 -51.93 -0.31 1.61 16 31 H 0.16 3.02 8.06 -52.49 -0.42 2.59 16 32 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 33 H 0.11 1.87 8.06 -52.48 -0.42 1.45 16 34 H 0.12 2.74 4.98 -52.48 -0.26 2.48 16 35 H 0.30 6.16 8.29 -40.82 -0.34 5.82 16 LS Contribution 280.67 15.07 4.23 4.23 Total: -1.00 -26.04 280.67 -7.38 -33.42 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -4.53 Total: 7.63 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -3.37 Total: -23.19 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.50 Total: -36.97 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.21 Total: 14.89 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -26.04 -7.38 -33.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076691.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.521 kcal (2) G-P(sol) polarization free energy of solvation -26.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.16 seconds