Wall clock time and date at job start Mon Mar 30 2020 05:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38829 * 119.66807 * 2 1 4 4 C 1.36627 * 120.52963 * 180.02562 * 3 2 1 5 5 C 1.39627 * 119.76541 * 0.02562 * 4 3 2 6 6 C 1.46489 * 134.03854 * 180.02562 * 5 4 3 7 7 C 1.50696 * 126.49917 * 0.02562 * 6 5 4 8 8 H 1.08998 * 109.47207 * 39.99707 * 7 6 5 9 9 N 1.46905 * 109.47244 * 159.99902 * 7 6 5 10 10 C 1.50701 * 109.47035 * 279.99956 * 7 6 5 11 11 H 1.07995 * 120.00198 * 359.97438 * 10 7 6 12 12 C 1.37880 * 120.00031 * 180.02562 * 10 7 6 13 13 N 1.31516 * 119.99683 * 359.97438 * 12 10 7 14 14 Si 1.86797 * 120.00027 * 180.02562 * 12 10 7 15 15 H 1.48497 * 109.47437 * 59.99716 * 14 12 10 16 16 H 1.48498 * 109.47140 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47137 * 299.99589 * 14 12 10 18 18 C 1.34241 * 106.99940 * 179.97438 * 6 5 4 19 19 N 1.36830 * 109.92632 * 359.75483 * 18 6 5 20 20 H 0.97006 * 125.05718 * 180.02562 * 19 18 6 21 21 C 1.37681 * 109.87762 * 0.40694 * 19 18 6 22 22 C 1.37748 * 119.66777 * 180.02562 * 2 1 3 23 23 C 1.50702 * 120.11059 * 359.97438 * 22 2 1 24 24 H 1.08995 * 109.46735 * 89.99986 * 1 2 3 25 25 H 1.08998 * 109.47353 * 210.00049 * 1 2 3 26 26 H 1.08999 * 109.46926 * 329.99639 * 1 2 3 27 27 H 1.07999 * 119.73695 * 0.04721 * 3 2 1 28 28 H 1.07997 * 120.11570 * 179.97438 * 4 3 2 29 29 H 1.00897 * 110.99820 * 296.04279 * 9 7 6 30 30 H 1.00901 * 110.99637 * 60.00215 * 9 7 6 31 31 H 0.97004 * 119.99445 * 180.02562 * 13 12 10 32 32 H 1.08000 * 125.03118 * 180.02562 * 18 6 5 33 33 H 1.08998 * 109.47447 * 270.01655 * 23 22 2 34 34 H 1.08999 * 109.47032 * 30.01652 * 23 22 2 35 35 H 1.08991 * 109.47181 * 150.01610 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.2063 0.0000 4 6 3.5603 1.2268 -0.0005 5 6 4.2716 0.0253 -0.0016 6 6 5.6966 -0.3144 -0.0019 7 6 6.8495 0.6560 -0.0005 8 1 6.6204 1.4914 0.6611 9 7 8.0622 -0.0249 0.4724 10 6 7.0750 1.1701 -1.3991 11 1 6.4467 0.8280 -2.2080 12 6 8.0843 2.0765 -1.6460 13 7 8.8498 2.4927 -0.6609 14 14 8.3634 2.7143 -3.3794 15 1 7.1376 3.4034 -3.8567 16 1 9.4995 3.6705 -3.3781 17 1 8.6746 1.5763 -4.2814 18 6 5.7806 -1.6542 -0.0026 19 7 4.5259 -2.2001 0.0028 20 1 4.3318 -3.1506 0.0039 21 6 3.5800 -1.1997 -0.0020 22 6 2.1888 -1.1969 -0.0005 23 6 1.4303 -2.4991 -0.0005 24 1 -0.3632 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6445 2.1359 0.0008 28 1 4.0881 2.1691 -0.0009 29 1 7.9593 -0.3224 1.4310 30 1 8.2957 -0.8039 -0.1249 31 1 9.5596 3.1307 -0.8346 32 1 6.7020 -2.2176 -0.0025 33 1 1.2475 -2.8132 1.0271 34 1 0.4783 -2.3650 -0.5142 35 1 2.0163 -3.2609 -0.5145 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261080570.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:12 Heat of formation + Delta-G solvation = 48.025625 kcal Electronic energy + Delta-G solvation = -17197.835338 eV Core-core repulsion = 14581.549496 eV Total energy + Delta-G solvation = -2616.285843 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.76037 -37.22618 -34.57889 -32.87668 -31.44140 -30.47019 -28.64949 -26.78957 -25.85945 -25.30538 -22.24960 -21.57858 -20.20501 -18.04396 -17.32193 -16.28174 -15.46440 -14.89622 -14.47370 -14.37660 -13.97076 -13.87438 -13.14222 -12.95555 -12.90669 -12.68755 -12.28657 -12.18703 -11.90146 -11.76154 -11.20222 -10.88310 -10.72928 -10.70131 -10.60568 -10.29120 -9.81113 -9.28446 -8.57013 -8.31603 -7.58590 -7.06690 -6.82823 -5.77282 -3.91129 1.62050 2.13796 3.38408 3.40967 3.45149 3.50748 3.66433 4.38741 4.58842 5.05735 5.16454 5.33992 5.38436 5.44540 5.50773 5.62236 5.64988 5.73790 5.83807 5.95865 5.97641 6.13140 6.22613 6.38831 6.49164 6.62655 6.74942 7.02531 7.13850 7.30235 7.46224 7.62064 7.78454 8.01549 8.08203 8.36120 8.75051 9.10200 9.25593 9.76628 11.26340 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028213 B = 0.006655 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.223094 B = 4206.165988 C = 4711.626227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.076 4.076 3 C -0.160 4.160 4 C -0.050 4.050 5 C -0.099 4.099 6 C -0.136 4.136 7 C 0.283 3.717 8 H 0.045 0.955 9 N -0.810 5.810 10 C -0.522 4.522 11 H 0.051 0.949 12 C 0.083 3.917 13 N -0.850 5.850 14 Si 0.881 3.119 15 H -0.279 1.279 16 H -0.288 1.288 17 H -0.279 1.279 18 C 0.000 4.000 19 N -0.601 5.601 20 H 0.404 0.596 21 C 0.100 3.900 22 C -0.115 4.115 23 C -0.105 4.105 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.297 0.703 30 H 0.315 0.685 31 H 0.255 0.745 32 H 0.158 0.842 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.142 -8.393 2.546 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.077 4.077 3 C -0.180 4.180 4 C -0.068 4.068 5 C -0.105 4.105 6 C -0.144 4.144 7 C 0.173 3.827 8 H 0.063 0.937 9 N -0.335 5.335 10 C -0.562 4.562 11 H 0.069 0.931 12 C -0.124 4.124 13 N -0.485 5.485 14 Si 0.709 3.291 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.205 1.205 18 C -0.122 4.122 19 N -0.205 5.205 20 H 0.240 0.760 21 C -0.008 4.008 22 C -0.118 4.118 23 C -0.161 4.161 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.133 0.867 28 H 0.143 0.857 29 H 0.107 0.893 30 H 0.126 0.874 31 H 0.065 0.935 32 H 0.175 0.825 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.543 -7.686 2.481 14.918 hybrid contribution -0.393 -0.992 -0.991 1.456 sum -12.936 -8.678 1.490 15.648 Atomic orbital electron populations 1.20731 0.91858 1.02116 1.01693 1.19268 0.94990 0.91999 1.01458 1.20389 0.93980 0.96759 1.06868 1.20400 0.93187 0.97295 0.95952 1.19219 0.93366 0.91930 1.05978 1.22453 0.94743 0.94213 1.03020 1.17583 0.79837 0.88881 0.96401 0.93728 1.59197 1.39459 1.31987 1.02902 1.20803 1.16657 1.25918 0.92772 0.93098 1.24942 0.95670 0.95765 0.95976 1.70097 1.18117 1.29882 1.30413 0.86869 0.77549 0.78706 0.85949 1.20428 1.21417 1.20508 1.21362 0.86795 0.94164 1.09908 1.41546 1.04760 1.07024 1.67151 0.76042 1.18070 0.89911 0.88594 1.04244 1.18481 0.89431 0.95006 1.08857 1.20628 0.99765 0.94387 1.01367 0.91739 0.91985 0.91870 0.86709 0.85651 0.89279 0.87369 0.93542 0.82498 0.92055 0.91512 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.17 36.01 0.33 -0.86 16 2 C -0.08 -1.15 5.88 -104.58 -0.61 -1.76 16 3 C -0.16 -2.65 9.62 -39.95 -0.38 -3.03 16 4 C -0.05 -0.98 10.05 -39.65 -0.40 -1.37 16 5 C -0.10 -2.07 6.35 -105.14 -0.67 -2.74 16 6 C -0.14 -2.95 5.40 -102.71 -0.55 -3.51 16 7 C 0.28 7.11 3.13 -70.01 -0.22 6.89 16 8 H 0.04 1.25 8.14 -51.93 -0.42 0.83 16 9 N -0.81 -18.88 8.23 -6.65 -0.05 -18.94 16 10 C -0.52 -14.58 8.71 -34.44 -0.30 -14.88 16 11 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 12 C 0.08 2.33 5.39 -17.82 -0.10 2.24 16 13 N -0.85 -24.96 12.77 55.43 0.71 -24.25 16 14 Si 0.88 21.73 29.54 -169.99 -5.02 16.71 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 C 0.00 0.01 11.06 -16.73 -0.19 -0.18 16 19 N -0.60 -9.67 6.07 -10.65 -0.06 -9.73 16 20 H 0.40 4.99 8.87 -40.82 -0.36 4.63 16 21 C 0.10 1.80 6.95 -83.99 -0.58 1.22 16 22 C -0.11 -1.79 5.89 -104.47 -0.62 -2.41 16 23 C -0.10 -1.21 9.18 36.01 0.33 -0.88 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.60 6.66 -51.93 -0.35 0.26 16 26 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 27 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 28 H 0.13 2.49 8.06 -52.49 -0.42 2.07 16 29 H 0.30 6.18 9.06 -39.29 -0.36 5.82 16 30 H 0.31 6.90 8.00 -39.29 -0.31 6.59 16 31 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.16 2.50 7.31 -52.49 -0.38 2.12 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.67 6.68 -51.93 -0.35 0.33 16 35 H 0.05 0.57 8.00 -51.93 -0.42 0.15 16 LS Contribution 293.96 15.07 4.43 4.43 Total: -1.00 -31.47 293.96 -8.56 -40.03 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -4.60 Total: 13.03 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -3.96 Total: -21.27 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.59 Total: -52.92 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.47 -8.56 -40.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261080570.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.055 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds