Wall clock time and date at job start Mon Mar 30 2020 05:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38829 * 119.66807 * 2 1 4 4 C 1.36627 * 120.52963 * 180.02562 * 3 2 1 5 5 C 1.39627 * 119.76541 * 0.02562 * 4 3 2 6 6 C 1.46489 * 134.03854 * 180.02562 * 5 4 3 7 7 C 1.50696 * 126.49917 * 0.02562 * 6 5 4 8 8 H 1.08998 * 109.47207 * 39.99707 * 7 6 5 9 9 N 1.46905 * 109.47244 * 159.99902 * 7 6 5 10 10 C 1.50701 * 109.47035 * 279.99956 * 7 6 5 11 11 H 1.07995 * 120.00198 * 359.97438 * 10 7 6 12 12 C 1.37880 * 120.00031 * 180.02562 * 10 7 6 13 13 N 1.31516 * 119.99683 * 359.97438 * 12 10 7 14 14 Si 1.86797 * 120.00027 * 180.02562 * 12 10 7 15 15 H 1.48497 * 109.47437 * 59.99716 * 14 12 10 16 16 H 1.48498 * 109.47140 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47137 * 299.99589 * 14 12 10 18 18 C 1.34241 * 106.99940 * 179.97438 * 6 5 4 19 19 N 1.36830 * 109.92632 * 359.75483 * 18 6 5 20 20 H 0.97006 * 125.05718 * 180.02562 * 19 18 6 21 21 C 1.37681 * 109.87762 * 0.40694 * 19 18 6 22 22 C 1.37748 * 119.66777 * 180.02562 * 2 1 3 23 23 C 1.50702 * 120.11059 * 359.97438 * 22 2 1 24 24 H 1.08995 * 109.46735 * 89.99986 * 1 2 3 25 25 H 1.08998 * 109.47353 * 210.00049 * 1 2 3 26 26 H 1.08999 * 109.46926 * 329.99639 * 1 2 3 27 27 H 1.07999 * 119.73695 * 0.04721 * 3 2 1 28 28 H 1.07997 * 120.11570 * 179.97438 * 4 3 2 29 29 H 1.00897 * 110.99820 * 296.04279 * 9 7 6 30 30 H 1.00901 * 110.99637 * 60.00215 * 9 7 6 31 31 H 0.97004 * 119.99445 * 180.02562 * 13 12 10 32 32 H 1.08000 * 125.03118 * 180.02562 * 18 6 5 33 33 H 1.08998 * 109.47447 * 270.01655 * 23 22 2 34 34 H 1.08999 * 109.47032 * 30.01652 * 23 22 2 35 35 H 1.08991 * 109.47181 * 150.01610 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.2063 0.0000 4 6 3.5603 1.2268 -0.0005 5 6 4.2716 0.0253 -0.0016 6 6 5.6966 -0.3144 -0.0019 7 6 6.8495 0.6560 -0.0005 8 1 6.6204 1.4914 0.6611 9 7 8.0622 -0.0249 0.4724 10 6 7.0750 1.1701 -1.3991 11 1 6.4467 0.8280 -2.2080 12 6 8.0843 2.0765 -1.6460 13 7 8.8498 2.4927 -0.6609 14 14 8.3634 2.7143 -3.3794 15 1 7.1376 3.4034 -3.8567 16 1 9.4995 3.6705 -3.3781 17 1 8.6746 1.5763 -4.2814 18 6 5.7806 -1.6542 -0.0026 19 7 4.5259 -2.2001 0.0028 20 1 4.3318 -3.1506 0.0039 21 6 3.5800 -1.1997 -0.0020 22 6 2.1888 -1.1969 -0.0005 23 6 1.4303 -2.4991 -0.0005 24 1 -0.3632 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6445 2.1359 0.0008 28 1 4.0881 2.1691 -0.0009 29 1 7.9593 -0.3224 1.4310 30 1 8.2957 -0.8039 -0.1249 31 1 9.5596 3.1307 -0.8346 32 1 6.7020 -2.2176 -0.0025 33 1 1.2475 -2.8132 1.0271 34 1 0.4783 -2.3650 -0.5142 35 1 2.0163 -3.2609 -0.5145 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261080570.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:11 Heat of formation + Delta-G solvation = 27.204925 kcal Electronic energy + Delta-G solvation = -17198.738192 eV Core-core repulsion = 14581.549496 eV Total energy + Delta-G solvation = -2617.188696 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.14082 -38.51839 -36.42918 -34.23735 -33.43356 -31.62651 -30.16396 -28.01351 -27.87529 -26.45900 -24.14741 -22.90754 -21.49328 -19.66421 -18.66278 -18.40775 -16.82963 -16.51669 -16.16194 -15.87249 -15.54926 -15.12672 -14.63241 -14.27710 -14.23143 -14.17631 -13.54229 -13.44760 -13.31865 -12.86663 -12.77505 -12.64395 -12.56795 -12.18478 -11.96867 -11.85788 -11.54624 -11.33203 -10.53269 -10.01888 -8.94452 -8.89165 -8.30855 -7.90309 -6.14052 0.27821 0.78624 1.41914 1.43282 1.50736 1.91871 2.35915 2.50238 3.01692 3.28278 3.91047 4.03710 4.11296 4.27446 4.36839 4.42831 4.54287 4.61707 4.80540 4.87531 4.90429 4.93543 4.99728 5.02453 5.15449 5.29958 5.39430 5.52504 5.75177 5.78263 5.80312 5.97486 5.97664 6.30556 6.37081 6.72308 6.89318 7.16774 7.33856 7.57592 9.09117 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028213 B = 0.006655 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.223094 B = 4206.165988 C = 4711.626227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.081 4.081 3 C -0.153 4.153 4 C -0.091 4.091 5 C -0.137 4.137 6 C -0.188 4.188 7 C 0.295 3.705 8 H -0.003 1.003 9 N -0.818 5.818 10 C -0.533 4.533 11 H 0.036 0.964 12 C 0.035 3.965 13 N -0.881 5.881 14 Si 0.943 3.057 15 H -0.278 1.278 16 H -0.282 1.282 17 H -0.273 1.273 18 C 0.028 3.972 19 N -0.583 5.583 20 H 0.426 0.574 21 C 0.088 3.912 22 C -0.111 4.111 23 C -0.103 4.103 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.136 0.864 28 H 0.098 0.902 29 H 0.312 0.688 30 H 0.324 0.676 31 H 0.255 0.745 32 H 0.182 0.818 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.427 -10.582 1.941 18.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.082 4.082 3 C -0.172 4.172 4 C -0.110 4.110 5 C -0.143 4.143 6 C -0.197 4.197 7 C 0.184 3.816 8 H 0.015 0.985 9 N -0.345 5.345 10 C -0.572 4.572 11 H 0.054 0.946 12 C -0.168 4.168 13 N -0.518 5.518 14 Si 0.769 3.231 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.198 1.198 18 C -0.097 4.097 19 N -0.188 5.188 20 H 0.265 0.735 21 C -0.020 4.020 22 C -0.114 4.114 23 C -0.159 4.159 24 H 0.097 0.903 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.154 0.846 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.136 0.864 31 H 0.064 0.936 32 H 0.199 0.801 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.858 -9.913 1.875 17.959 hybrid contribution 0.207 -0.339 -0.754 0.852 sum -14.651 -10.252 1.121 17.917 Atomic orbital electron populations 1.20805 0.88353 1.03811 1.03056 1.19797 0.97444 0.91079 0.99895 1.20703 0.92763 0.98784 1.04952 1.20401 0.94783 0.96280 0.99524 1.19483 0.93490 0.93702 1.07609 1.22062 0.94454 0.95271 1.07911 1.17046 0.81859 0.88776 0.93870 0.98542 1.58947 1.39143 1.32450 1.03962 1.21050 1.16181 1.26163 0.93833 0.94593 1.25645 0.95518 0.95994 0.99641 1.70223 1.18688 1.30593 1.32261 0.85884 0.77421 0.78252 0.81526 1.20342 1.20708 1.19832 1.21558 0.88365 0.93137 1.06637 1.41431 1.03578 1.07902 1.65853 0.73469 1.18313 0.91123 0.87796 1.04745 1.19033 0.88587 0.97261 1.06522 1.20724 1.00224 0.92067 1.02920 0.90326 0.89914 0.90698 0.84599 0.88351 0.87732 0.86382 0.93632 0.80080 0.90324 0.89397 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.87 9.17 71.24 0.65 -1.22 16 2 C -0.08 -2.25 5.88 -19.84 -0.12 -2.37 16 3 C -0.15 -5.02 9.62 22.03 0.21 -4.81 16 4 C -0.09 -3.79 10.05 22.23 0.22 -3.57 16 5 C -0.14 -5.95 6.35 -20.20 -0.13 -6.07 16 6 C -0.19 -8.50 5.40 -18.63 -0.10 -8.60 16 7 C 0.30 15.66 3.13 43.42 0.14 15.80 16 8 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 9 N -0.82 -39.29 8.23 -174.95 -1.44 -40.73 16 10 C -0.53 -31.08 8.71 25.60 0.22 -30.85 16 11 H 0.04 2.14 7.74 -2.91 -0.02 2.12 16 12 C 0.04 2.04 5.39 84.66 0.46 2.49 16 13 N -0.88 -53.46 12.77 21.45 0.27 -53.19 16 14 Si 0.94 45.67 29.54 68.60 2.03 47.70 16 15 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 16 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 17 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 18 C 0.03 1.00 11.06 83.00 0.92 1.92 16 19 N -0.58 -17.60 6.07 -187.61 -1.14 -18.74 16 20 H 0.43 9.10 8.87 -92.70 -0.82 8.28 16 21 C 0.09 3.10 6.95 39.03 0.27 3.37 16 22 C -0.11 -3.17 5.89 -19.77 -0.12 -3.29 16 23 C -0.10 -1.91 9.18 71.24 0.65 -1.26 16 24 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.08 1.18 6.66 -2.39 -0.02 1.16 16 26 H 0.07 1.20 8.08 -2.39 -0.02 1.18 16 27 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 28 H 0.10 4.41 8.06 -2.91 -0.02 4.38 16 29 H 0.31 13.30 9.06 -89.70 -0.81 12.49 16 30 H 0.32 14.35 8.00 -89.69 -0.72 13.63 16 31 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.18 5.46 7.31 -2.91 -0.02 5.44 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.30 6.68 -2.39 -0.02 1.29 16 35 H 0.06 1.06 8.00 -2.39 -0.02 1.04 16 Total: -1.00 -71.55 293.96 1.79 -69.76 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: -1.22 Total: 33.66 kcal Atomic # 6 Polarization: -41.75 SS G_CDS: 3.29 Total: -38.46 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -2.30 Total: -112.66 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -71.55 1.79 -69.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261080570.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.968 kcal (2) G-P(sol) polarization free energy of solvation -71.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds