Wall clock time and date at job start Mon Mar 30 2020 05:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38038 * 120.43144 * 2 1 4 4 C 1.40139 * 119.41979 * 179.97438 * 3 2 1 5 5 C 1.35318 * 120.38553 * 359.97438 * 4 3 2 6 6 N 1.36635 * 120.67605 * 0.02562 * 5 4 3 7 7 C 1.36367 * 132.71679 * 180.02562 * 6 5 4 8 8 C 1.50698 * 124.95046 * 0.02562 * 7 6 5 9 9 C 1.52995 * 109.46917 * 120.00303 * 8 7 6 10 10 C 1.52998 * 109.47263 * 240.00702 * 8 7 6 11 11 N 1.30365 * 110.10044 * 179.74502 * 7 6 5 12 12 C 1.35047 * 109.83543 * 0.41051 * 11 7 6 13 13 C 1.40273 * 126.60637 * 179.86109 * 12 11 7 14 14 H 1.08002 * 120.00457 * 152.38384 * 13 12 11 15 15 C 1.39611 * 119.99608 * 332.38571 * 13 12 11 16 16 N 1.31161 * 119.99859 * 350.82905 * 15 13 12 17 17 Si 1.86801 * 119.99903 * 170.83605 * 15 13 12 18 18 H 1.48493 * 109.47016 * 180.02562 * 17 15 13 19 19 H 1.48509 * 109.46776 * 299.99592 * 17 15 13 20 20 H 1.48496 * 109.47318 * 59.99288 * 17 15 13 21 21 C 1.37652 * 120.09318 * 359.97438 * 6 5 4 22 22 H 1.09005 * 109.47236 * 263.39846 * 1 2 3 23 23 H 1.09002 * 109.46943 * 23.39535 * 1 2 3 24 24 H 1.09002 * 109.47047 * 143.39874 * 1 2 3 25 25 H 1.08001 * 120.28661 * 359.95854 * 3 2 1 26 26 H 1.08006 * 119.80561 * 179.97438 * 4 3 2 27 27 H 1.08001 * 119.66379 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.47221 * 0.02562 * 8 7 6 29 29 H 1.09009 * 109.47191 * 60.00491 * 9 8 7 30 30 H 1.08999 * 109.47510 * 180.02562 * 9 8 7 31 31 H 1.08999 * 109.47501 * 300.00699 * 9 8 7 32 32 H 1.08999 * 109.47136 * 299.99665 * 10 8 7 33 33 H 1.08997 * 109.47153 * 60.00326 * 10 8 7 34 34 H 1.09003 * 109.46739 * 180.02562 * 10 8 7 35 35 H 0.96992 * 120.00348 * 352.54080 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1902 0.0000 4 6 3.6073 1.1655 0.0005 5 6 4.2710 -0.0137 0.0016 6 7 3.5889 -1.1976 0.0016 7 6 3.9952 -2.4994 0.0030 8 6 5.4315 -2.9555 0.0055 9 6 5.6972 -3.7966 1.2555 10 6 5.7013 -3.7978 -1.2429 11 7 2.9600 -3.2918 0.0077 12 6 1.8240 -2.5616 0.0007 13 6 0.5115 -3.0566 0.0001 14 1 -0.2874 -2.4694 0.4283 15 6 0.2379 -4.3085 -0.5540 16 7 1.1649 -4.9425 -1.2315 17 14 -1.4484 -5.0805 -0.3305 18 1 -1.4821 -6.4009 -1.0090 19 1 -1.7217 -5.2618 1.1179 20 1 -2.4815 -4.1928 -0.9218 21 6 2.2124 -1.2011 0.0011 22 1 -0.3634 -0.1181 1.0209 23 1 -0.3633 0.9432 -0.4081 24 1 -0.3633 -0.8250 -0.6127 25 1 1.6779 2.1322 -0.0007 26 1 4.1606 2.0930 0.0001 27 1 5.3510 -0.0192 0.0016 28 1 6.0888 -2.0860 0.0065 29 1 5.0399 -4.6662 1.2549 30 1 6.7362 -4.1262 1.2577 31 1 5.5049 -3.1966 2.1449 32 1 5.0440 -4.6673 -1.2436 33 1 5.5120 -3.1985 -2.1335 34 1 6.7401 -4.1280 -1.2408 35 1 2.0017 -4.4990 -1.4405 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261091623.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:16 Heat of formation + Delta-G solvation = 52.063957 kcal Electronic energy + Delta-G solvation = -17737.568254 eV Core-core repulsion = 15121.457526 eV Total energy + Delta-G solvation = -2616.110727 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.20378 -36.55053 -34.96880 -33.63254 -32.41071 -29.94527 -27.71533 -26.74253 -26.47852 -24.51999 -22.13108 -21.73012 -20.79590 -18.51698 -17.75500 -15.93635 -15.51622 -14.71722 -14.64151 -14.12279 -13.91440 -13.77485 -13.17591 -12.83554 -12.54951 -12.32035 -12.18724 -11.74694 -11.66864 -11.25434 -11.10407 -10.89257 -10.70012 -10.62307 -10.46509 -10.36185 -10.19632 -9.58943 -9.30255 -8.80345 -8.69140 -8.00685 -6.97155 -6.41777 -4.12715 1.88248 2.40585 3.23642 3.26489 3.44239 3.88508 4.16402 4.28714 4.44789 5.08837 5.30012 5.36373 5.39105 5.61314 5.67754 5.73760 5.87137 5.98230 6.01667 6.12416 6.20722 6.27172 6.28828 6.30147 6.40257 6.60234 6.67138 6.74861 6.85621 7.07071 7.14065 7.35078 7.44526 7.78880 8.00798 8.12662 8.49705 8.81154 8.97242 9.52740 10.42507 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017643 B = 0.010833 C = 0.007129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.660012 B = 2584.102437 C = 3926.863327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.042 3.958 3 C -0.270 4.270 4 C -0.107 4.107 5 C -0.017 4.017 6 N -0.380 5.380 7 C 0.184 3.816 8 C 0.000 4.000 9 C -0.135 4.135 10 C -0.136 4.136 11 N -0.502 5.502 12 C 0.213 3.787 13 C -0.484 4.484 14 H 0.083 0.917 15 C 0.033 3.967 16 N -0.799 5.799 17 Si 1.070 2.930 18 H -0.275 1.275 19 H -0.278 1.278 20 H -0.278 1.278 21 C -0.134 4.134 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.087 0.913 25 H 0.107 0.893 26 H 0.119 0.881 27 H 0.133 0.867 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.114 4.941 1.323 6.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.040 3.960 3 C -0.290 4.290 4 C -0.129 4.129 5 C -0.135 4.135 6 N -0.058 5.058 7 C -0.071 4.071 8 C -0.020 4.020 9 C -0.193 4.193 10 C -0.194 4.194 11 N -0.226 5.226 12 C 0.085 3.915 13 C -0.518 4.518 14 H 0.101 0.899 15 C -0.189 4.189 16 N -0.425 5.425 17 Si 0.894 3.106 18 H -0.200 1.200 19 H -0.204 1.204 20 H -0.204 1.204 21 C -0.234 4.234 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.105 0.895 25 H 0.125 0.875 26 H 0.137 0.863 27 H 0.150 0.850 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.462 2.720 1.010 4.517 hybrid contribution 1.123 2.607 0.354 2.861 sum 4.585 5.327 1.364 7.160 Atomic orbital electron populations 1.20835 0.91323 1.02332 1.02394 1.19155 0.95180 0.90384 0.91240 1.20422 0.93222 0.96275 1.19120 1.20262 0.94882 0.95477 1.02284 1.20890 0.96472 0.84547 1.11578 1.42070 1.07159 1.04961 1.51636 1.23034 0.96563 0.78083 1.09444 1.19337 0.87947 0.97898 0.96826 1.21732 1.00753 1.00562 0.96226 1.21741 1.00790 1.00638 0.96216 1.70428 0.96893 1.30970 1.24323 1.18486 0.92441 0.85238 0.95376 1.19525 0.91390 1.04761 1.36165 0.89918 1.26815 1.05240 0.93892 0.92976 1.70344 1.08161 1.38667 1.25364 0.83565 0.72903 0.76754 0.77359 1.20017 1.20360 1.20356 1.19190 0.82097 0.96186 1.25977 0.91448 0.92721 0.89471 0.87455 0.86327 0.84962 0.91486 0.91227 0.92809 0.93250 0.91076 0.93173 0.92809 0.87762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 8.95 36.00 0.32 -1.83 16 2 C 0.04 0.95 5.91 -104.31 -0.62 0.33 16 3 C -0.27 -5.40 9.80 -38.94 -0.38 -5.78 16 4 C -0.11 -1.99 9.98 -39.91 -0.40 -2.39 16 5 C -0.02 -0.34 10.69 -16.45 -0.18 -0.52 16 6 N -0.38 -8.89 2.95 -57.52 -0.17 -9.06 16 7 C 0.18 4.28 6.45 -154.31 -1.00 3.28 16 8 C 0.00 0.01 3.32 -91.78 -0.30 -0.30 16 9 C -0.13 -2.22 9.17 37.15 0.34 -1.88 16 10 C -0.14 -2.28 9.17 37.16 0.34 -1.94 16 11 N -0.50 -13.36 9.07 -7.89 -0.07 -13.44 16 12 C 0.21 5.84 6.22 -84.45 -0.53 5.31 16 13 C -0.48 -13.01 8.04 -38.30 -0.31 -13.32 16 14 H 0.08 2.08 6.19 -52.49 -0.33 1.75 16 15 C 0.03 0.88 5.46 -17.33 -0.09 0.78 16 16 N -0.80 -22.55 13.39 55.53 0.74 -21.81 16 17 Si 1.07 22.22 29.94 -169.99 -5.09 17.13 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 20 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 21 C -0.13 -3.41 6.69 -83.62 -0.56 -3.97 16 22 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 23 H 0.05 0.88 8.05 -51.93 -0.42 0.47 16 24 H 0.09 1.80 6.24 -51.93 -0.32 1.48 16 25 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 26 H 0.12 1.76 8.06 -52.48 -0.42 1.33 16 27 H 0.13 2.16 7.41 -52.49 -0.39 1.77 16 28 H 0.07 1.07 7.24 -51.93 -0.38 0.69 16 29 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.31 8.97 6.23 -40.82 -0.25 8.71 16 LS Contribution 291.00 15.07 4.39 4.39 Total: -1.00 -30.58 291.00 -8.24 -38.83 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -4.69 Total: 6.18 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -3.36 Total: -22.21 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.50 Total: -44.31 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.09 Total: 17.13 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.58 -8.24 -38.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261091623.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.890 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds