Wall clock time and date at job start Mon Mar 30 2020 05:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38038 * 120.43144 * 2 1 4 4 C 1.40139 * 119.41979 * 179.97438 * 3 2 1 5 5 C 1.35318 * 120.38553 * 359.97438 * 4 3 2 6 6 N 1.36635 * 120.67605 * 0.02562 * 5 4 3 7 7 C 1.36367 * 132.71679 * 180.02562 * 6 5 4 8 8 C 1.50698 * 124.95046 * 0.02562 * 7 6 5 9 9 C 1.52995 * 109.46917 * 120.00303 * 8 7 6 10 10 C 1.52998 * 109.47263 * 240.00702 * 8 7 6 11 11 N 1.30365 * 110.10044 * 179.74502 * 7 6 5 12 12 C 1.35047 * 109.83543 * 0.41051 * 11 7 6 13 13 C 1.40273 * 126.60637 * 179.86109 * 12 11 7 14 14 H 1.08002 * 120.00457 * 152.38384 * 13 12 11 15 15 C 1.39611 * 119.99608 * 332.38571 * 13 12 11 16 16 N 1.31161 * 119.99859 * 350.82905 * 15 13 12 17 17 Si 1.86801 * 119.99903 * 170.83605 * 15 13 12 18 18 H 1.48493 * 109.47016 * 180.02562 * 17 15 13 19 19 H 1.48509 * 109.46776 * 299.99592 * 17 15 13 20 20 H 1.48496 * 109.47318 * 59.99288 * 17 15 13 21 21 C 1.37652 * 120.09318 * 359.97438 * 6 5 4 22 22 H 1.09005 * 109.47236 * 263.39846 * 1 2 3 23 23 H 1.09002 * 109.46943 * 23.39535 * 1 2 3 24 24 H 1.09002 * 109.47047 * 143.39874 * 1 2 3 25 25 H 1.08001 * 120.28661 * 359.95854 * 3 2 1 26 26 H 1.08006 * 119.80561 * 179.97438 * 4 3 2 27 27 H 1.08001 * 119.66379 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.47221 * 0.02562 * 8 7 6 29 29 H 1.09009 * 109.47191 * 60.00491 * 9 8 7 30 30 H 1.08999 * 109.47510 * 180.02562 * 9 8 7 31 31 H 1.08999 * 109.47501 * 300.00699 * 9 8 7 32 32 H 1.08999 * 109.47136 * 299.99665 * 10 8 7 33 33 H 1.08997 * 109.47153 * 60.00326 * 10 8 7 34 34 H 1.09003 * 109.46739 * 180.02562 * 10 8 7 35 35 H 0.96992 * 120.00348 * 352.54080 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1902 0.0000 4 6 3.6073 1.1655 0.0005 5 6 4.2710 -0.0137 0.0016 6 7 3.5889 -1.1976 0.0016 7 6 3.9952 -2.4994 0.0030 8 6 5.4315 -2.9555 0.0055 9 6 5.6972 -3.7966 1.2555 10 6 5.7013 -3.7978 -1.2429 11 7 2.9600 -3.2918 0.0077 12 6 1.8240 -2.5616 0.0007 13 6 0.5115 -3.0566 0.0001 14 1 -0.2874 -2.4694 0.4283 15 6 0.2379 -4.3085 -0.5540 16 7 1.1649 -4.9425 -1.2315 17 14 -1.4484 -5.0805 -0.3305 18 1 -1.4821 -6.4009 -1.0090 19 1 -1.7217 -5.2618 1.1179 20 1 -2.4815 -4.1928 -0.9218 21 6 2.2124 -1.2011 0.0011 22 1 -0.3634 -0.1181 1.0209 23 1 -0.3633 0.9432 -0.4081 24 1 -0.3633 -0.8250 -0.6127 25 1 1.6779 2.1322 -0.0007 26 1 4.1606 2.0930 0.0001 27 1 5.3510 -0.0192 0.0016 28 1 6.0888 -2.0860 0.0065 29 1 5.0399 -4.6662 1.2549 30 1 6.7362 -4.1262 1.2577 31 1 5.5049 -3.1966 2.1449 32 1 5.0440 -4.6673 -1.2436 33 1 5.5120 -3.1985 -2.1335 34 1 6.7401 -4.1280 -1.2408 35 1 2.0017 -4.4990 -1.4405 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261091623.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:15 Heat of formation + Delta-G solvation = 35.415854 kcal Electronic energy + Delta-G solvation = -17738.290169 eV Core-core repulsion = 15121.457526 eV Total energy + Delta-G solvation = -2616.832643 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.97623 -38.21425 -36.60192 -35.25132 -34.16669 -31.65267 -29.51066 -28.14516 -28.08214 -26.27209 -23.70234 -23.41861 -22.57958 -20.13801 -19.55673 -17.65602 -17.19007 -16.41720 -16.32800 -15.65646 -15.50996 -15.30746 -14.79316 -14.29457 -14.27536 -13.94795 -13.76330 -13.23262 -13.09271 -12.86031 -12.65056 -12.36179 -12.23098 -12.10579 -12.01894 -11.91505 -11.78274 -11.42980 -11.05954 -10.63346 -10.54594 -9.76624 -8.92580 -8.22587 -6.06192 0.22371 0.70382 1.54039 1.61296 1.82343 2.21292 2.42881 2.50803 2.74198 3.41792 3.62130 3.89869 3.92037 4.18026 4.20543 4.25801 4.36227 4.46194 4.60563 4.73406 4.74735 4.82172 4.83019 4.90336 4.94776 5.02643 5.25540 5.30483 5.31396 5.43722 5.48608 5.60795 5.74196 5.94746 6.12599 6.22598 6.71503 7.01644 7.09134 7.69845 8.43165 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017643 B = 0.010833 C = 0.007129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.660012 B = 2584.102437 C = 3926.863327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.006 4.006 3 C -0.230 4.230 4 C -0.115 4.115 5 C -0.020 4.020 6 N -0.382 5.382 7 C 0.159 3.841 8 C 0.001 3.999 9 C -0.127 4.127 10 C -0.128 4.128 11 N -0.530 5.530 12 C 0.162 3.838 13 C -0.522 4.522 14 H 0.084 0.916 15 C -0.009 4.009 16 N -0.846 5.846 17 Si 1.121 2.879 18 H -0.279 1.279 19 H -0.267 1.267 20 H -0.255 1.255 21 C -0.151 4.151 22 H 0.070 0.930 23 H 0.088 0.912 24 H 0.061 0.939 25 H 0.145 0.855 26 H 0.171 0.829 27 H 0.174 0.826 28 H 0.099 0.901 29 H 0.037 0.963 30 H 0.095 0.905 31 H 0.043 0.957 32 H 0.036 0.964 33 H 0.040 0.960 34 H 0.096 0.904 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.705 8.228 1.822 10.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.008 4.008 3 C -0.250 4.250 4 C -0.136 4.136 5 C -0.137 4.137 6 N -0.059 5.059 7 C -0.096 4.096 8 C -0.019 4.019 9 C -0.185 4.185 10 C -0.186 4.186 11 N -0.253 5.253 12 C 0.033 3.967 13 C -0.557 4.557 14 H 0.102 0.898 15 C -0.222 4.222 16 N -0.474 5.474 17 Si 0.939 3.061 18 H -0.204 1.204 19 H -0.192 1.192 20 H -0.179 1.179 21 C -0.253 4.253 22 H 0.089 0.911 23 H 0.107 0.893 24 H 0.080 0.920 25 H 0.162 0.838 26 H 0.189 0.811 27 H 0.191 0.809 28 H 0.117 0.883 29 H 0.056 0.944 30 H 0.114 0.886 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.114 0.886 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.073 6.024 1.518 8.020 hybrid contribution 0.882 2.055 0.251 2.250 sum 5.954 8.078 1.769 10.190 Atomic orbital electron populations 1.20768 0.89836 1.03080 1.02386 1.19619 0.96808 0.90333 0.94014 1.21115 0.94352 0.96661 1.12834 1.20936 0.94647 0.97104 1.00920 1.21847 0.98728 0.83651 1.09490 1.42453 1.06898 1.06272 1.50238 1.23945 0.98092 0.77943 1.09656 1.19597 0.85259 0.99306 0.97722 1.21673 1.02505 0.98974 0.95318 1.21680 1.02510 0.98998 0.95414 1.70309 0.97926 1.32760 1.24306 1.18878 0.93069 0.86757 0.97963 1.19668 0.91814 1.05912 1.38316 0.89766 1.28273 1.07941 0.94470 0.91565 1.70461 1.08446 1.39223 1.29245 0.82961 0.69233 0.76001 0.77897 1.20378 1.19175 1.17903 1.19621 0.83510 0.96633 1.25582 0.91130 0.89320 0.91976 0.83770 0.81143 0.80867 0.88322 0.94400 0.88639 0.93764 0.94457 0.94057 0.88575 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.93 8.95 71.23 0.64 -3.29 16 2 C -0.01 -0.25 5.91 -19.66 -0.12 -0.37 16 3 C -0.23 -8.11 9.80 22.68 0.22 -7.89 16 4 C -0.11 -3.62 9.98 22.06 0.22 -3.40 16 5 C -0.02 -0.70 10.69 83.27 0.89 0.19 16 6 N -0.38 -17.57 2.95 -335.91 -0.99 -18.56 16 7 C 0.16 7.49 6.45 137.74 0.89 8.38 16 8 C 0.00 0.05 3.32 -11.54 -0.04 0.01 16 9 C -0.13 -4.06 9.17 71.98 0.66 -3.40 16 10 C -0.13 -4.23 9.17 71.98 0.66 -3.57 16 11 N -0.53 -29.94 9.07 -178.88 -1.62 -31.56 16 12 C 0.16 9.44 6.22 39.95 0.25 9.69 16 13 C -0.52 -30.01 8.04 23.10 0.19 -29.83 16 14 H 0.08 4.53 6.19 -2.91 -0.02 4.52 16 15 C -0.01 -0.50 5.46 85.12 0.47 -0.03 16 16 N -0.85 -51.56 13.39 21.78 0.29 -51.27 16 17 Si 1.12 47.18 29.94 68.60 2.05 49.24 16 18 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 19 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 20 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 21 C -0.15 -7.79 6.69 39.28 0.26 -7.53 16 22 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 23 H 0.09 2.64 8.05 -2.39 -0.02 2.62 16 24 H 0.06 2.66 6.24 -2.39 -0.01 2.64 16 25 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 26 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 27 H 0.17 4.65 7.41 -2.91 -0.02 4.63 16 28 H 0.10 2.78 7.24 -2.39 -0.02 2.76 16 29 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.29 18.28 6.23 -92.71 -0.58 17.70 16 Total: -1.00 -73.85 291.00 6.19 -67.66 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 1.27 Total: 25.54 kcal Atomic # 6 Polarization: -46.23 SS G_CDS: 5.19 Total: -41.04 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -2.32 Total: -101.40 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.05 Total: 49.24 kcal Total: -73.85 6.19 -67.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261091623.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.078 kcal (2) G-P(sol) polarization free energy of solvation -73.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds