Wall clock time and date at job start Mon Mar 30 2020 07:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36827 * 125.06158 * 2 1 4 4 C 1.34241 * 109.93323 * 179.97438 * 3 2 1 5 5 C 1.46490 * 106.99016 * 359.97438 * 4 3 2 6 6 C 1.39631 * 134.02322 * 180.02562 * 5 4 3 7 7 C 1.36632 * 119.76154 * 179.97438 * 6 5 4 8 8 C 1.38834 * 120.52653 * 359.97438 * 7 6 5 9 9 C 1.37752 * 120.66783 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.10925 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.46826 * 222.80041 * 10 9 8 12 12 N 1.46904 * 109.47041 * 102.80224 * 10 9 8 13 13 C 1.53001 * 109.47203 * 342.80268 * 10 9 8 14 14 C 1.50701 * 109.46909 * 185.00234 * 13 10 9 15 15 H 1.08001 * 120.00020 * 359.97438 * 14 13 10 16 16 C 1.37873 * 119.99699 * 180.02562 * 14 13 10 17 17 N 1.31514 * 119.99825 * 179.72184 * 16 14 13 18 18 Si 1.86797 * 120.00275 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47423 * 269.72658 * 18 16 14 20 20 H 1.48503 * 109.46924 * 29.72984 * 18 16 14 21 21 H 1.48504 * 109.47525 * 149.72456 * 18 16 14 22 22 C 1.37691 * 125.06243 * 180.26858 * 2 1 3 23 23 H 1.09003 * 109.47094 * 95.75579 * 1 2 3 24 24 H 1.09002 * 109.47121 * 215.75380 * 1 2 3 25 25 H 1.08993 * 109.47471 * 335.75657 * 1 2 3 26 26 H 1.08007 * 125.03321 * 0.02562 * 3 2 1 27 27 H 1.07992 * 126.50584 * 179.97438 * 4 3 2 28 28 H 1.07998 * 120.12564 * 359.97438 * 6 5 4 29 29 H 1.08002 * 119.73567 * 180.02562 * 7 6 5 30 30 H 1.08002 * 119.66491 * 179.97438 * 8 7 6 31 31 H 1.00901 * 110.99906 * 176.04424 * 12 10 9 32 32 H 1.00895 * 110.99754 * 300.00273 * 12 10 9 33 33 H 1.08995 * 109.47031 * 65.00194 * 13 10 9 34 34 H 1.09003 * 109.46746 * 304.99976 * 13 10 9 35 35 H 0.97001 * 120.00095 * 180.27104 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1200 0.0000 4 6 3.5469 0.7696 0.0006 5 6 3.5945 -0.6945 0.0016 6 6 4.6295 -1.6317 0.0029 7 6 4.3361 -2.9662 0.0042 8 6 3.0167 -3.3981 0.0046 9 6 1.9803 -2.4907 0.0033 10 6 0.5527 -2.9734 0.0032 11 1 -0.0327 -2.3762 -0.6959 12 7 -0.0100 -2.8382 1.3535 13 6 0.5112 -4.4426 -0.4218 14 6 -0.9227 -4.8908 -0.5408 15 1 -1.7242 -4.1972 -0.3336 16 6 -1.2113 -6.1865 -0.9132 17 7 -2.4625 -6.5792 -1.0117 18 14 0.1750 -7.3863 -1.2710 19 1 0.5274 -7.3202 -2.7120 20 1 1.3624 -7.0286 -0.4540 21 1 -0.2626 -8.7641 -0.9312 22 6 2.2560 -1.1270 -0.0053 23 1 -0.3633 -0.1031 -1.0225 24 1 -0.3633 -0.8340 0.6005 25 1 -0.3634 0.9370 0.4219 26 1 1.8833 2.1355 0.0004 27 1 4.3936 1.4399 0.0003 28 1 5.6583 -1.3031 0.0030 29 1 5.1370 -3.6907 0.0056 30 1 2.8006 -4.4563 0.0052 31 1 -0.9857 -3.0948 1.3659 32 1 0.5158 -3.3829 2.0204 33 1 1.0214 -5.0513 0.3246 34 1 1.0086 -4.5563 -1.3851 35 1 -2.6656 -7.4919 -1.2699 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261092573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:10 Heat of formation + Delta-G solvation = 58.048290 kcal Electronic energy + Delta-G solvation = -17416.764402 eV Core-core repulsion = 14800.913174 eV Total energy + Delta-G solvation = -2615.851227 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.03309 -37.29407 -35.52825 -32.65656 -31.74937 -29.81387 -29.04545 -28.13274 -26.01547 -24.08190 -22.24125 -21.56180 -20.00437 -19.06660 -17.21087 -16.33156 -16.04074 -15.23323 -14.98451 -14.76353 -14.33064 -13.67259 -13.55681 -13.22806 -12.77507 -12.50765 -12.48899 -12.34919 -12.10944 -11.79637 -11.48692 -10.99735 -10.85931 -10.73755 -10.41251 -10.01721 -9.80211 -9.28455 -9.13794 -8.64828 -7.96188 -7.81147 -7.22909 -6.15247 -4.14766 1.49057 2.04475 2.99872 3.19570 3.24602 3.32591 3.34882 4.28464 4.36396 4.97560 5.02669 5.16611 5.17852 5.33390 5.35929 5.55008 5.62845 5.73436 5.75411 5.95301 6.04106 6.15409 6.20805 6.27458 6.44698 6.52748 6.91436 6.95506 7.04520 7.09252 7.16673 7.23425 7.58968 7.65679 7.66746 7.86064 8.14926 8.38902 8.86397 9.47339 10.97426 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029686 B = 0.007096 C = 0.005976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.978080 B = 3944.687916 C = 4684.490793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.474 5.474 3 C 0.045 3.955 4 C -0.216 4.216 5 C -0.118 4.118 6 C -0.085 4.085 7 C -0.147 4.147 8 C -0.104 4.104 9 C -0.069 4.069 10 C 0.135 3.865 11 H 0.077 0.923 12 N -0.838 5.838 13 C -0.041 4.041 14 C -0.525 4.525 15 H 0.072 0.928 16 C 0.070 3.930 17 N -0.899 5.899 18 Si 0.879 3.121 19 H -0.277 1.277 20 H -0.266 1.266 21 H -0.288 1.288 22 C 0.116 3.884 23 H 0.061 0.939 24 H 0.118 0.882 25 H 0.072 0.928 26 H 0.161 0.839 27 H 0.140 0.860 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.349 0.651 32 H 0.334 0.666 33 H 0.020 0.980 34 H 0.017 0.983 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.047 12.139 2.695 15.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.155 5.155 3 C -0.082 4.082 4 C -0.242 4.242 5 C -0.123 4.123 6 C -0.104 4.104 7 C -0.166 4.166 8 C -0.124 4.124 9 C -0.072 4.072 10 C 0.024 3.976 11 H 0.095 0.905 12 N -0.367 5.367 13 C -0.080 4.080 14 C -0.563 4.563 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.538 5.538 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.190 1.190 21 H -0.214 1.214 22 C 0.010 3.990 23 H 0.080 0.920 24 H 0.136 0.864 25 H 0.091 0.909 26 H 0.179 0.821 27 H 0.157 0.843 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.146 0.854 31 H 0.164 0.836 32 H 0.145 0.855 33 H 0.038 0.962 34 H 0.035 0.965 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.701 12.794 2.583 16.262 hybrid contribution 0.393 -1.743 -0.437 1.839 sum 10.094 11.051 2.146 15.120 Atomic orbital electron populations 1.22397 0.76959 1.05431 1.03361 1.43771 1.06108 1.04001 1.61639 1.21735 0.90660 0.91074 1.04702 1.21536 0.95678 0.92893 1.14043 1.19177 0.92305 0.93351 1.07445 1.20118 0.97303 0.92122 1.00889 1.20583 0.96311 0.95287 1.04382 1.20966 0.91625 0.99630 1.00175 1.19154 0.96427 0.89034 1.02591 1.20235 0.89355 0.97103 0.90894 0.90544 1.59184 1.08306 1.62818 1.06367 1.20355 0.98238 0.92785 0.96639 1.21036 0.90798 0.97254 1.47208 0.90951 1.25001 0.95326 0.98246 0.94608 1.69906 1.17723 1.18142 1.47998 0.86790 0.82986 0.80404 0.79163 1.20244 1.19021 1.21385 1.18076 0.89522 0.87899 1.03549 0.92041 0.86421 0.90949 0.82120 0.84252 0.86826 0.86625 0.85419 0.83642 0.85468 0.96206 0.96468 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.81 9.68 59.85 0.58 1.39 16 2 N -0.47 -7.29 3.18 -121.80 -0.39 -7.68 16 3 C 0.04 0.58 11.27 -16.73 -0.19 0.40 16 4 C -0.22 -3.00 11.08 -37.67 -0.42 -3.42 16 5 C -0.12 -1.96 6.37 -105.14 -0.67 -2.63 16 6 C -0.09 -1.30 10.05 -39.64 -0.40 -1.70 16 7 C -0.15 -2.29 9.97 -39.94 -0.40 -2.69 16 8 C -0.10 -1.86 9.04 -39.54 -0.36 -2.22 16 9 C -0.07 -1.29 5.35 -104.47 -0.56 -1.85 16 10 C 0.13 2.64 2.02 -68.86 -0.14 2.50 16 11 H 0.08 1.55 6.64 -51.93 -0.34 1.21 16 12 N -0.84 -14.89 7.44 -5.65 -0.04 -14.93 16 13 C -0.04 -0.95 2.44 -27.88 -0.07 -1.02 16 14 C -0.53 -14.09 9.10 -34.44 -0.31 -14.40 16 15 H 0.07 2.05 7.39 -52.49 -0.39 1.67 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -26.89 13.96 55.43 0.77 -26.11 16 18 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 C 0.12 2.06 6.75 -83.99 -0.57 1.49 16 23 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 24 H 0.12 1.77 4.92 -51.93 -0.26 1.52 16 25 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 26 H 0.16 1.48 8.06 -52.48 -0.42 1.06 16 27 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.13 2.33 6.06 -52.49 -0.32 2.01 16 31 H 0.35 6.44 7.90 -39.29 -0.31 6.13 16 32 H 0.33 5.85 8.99 -39.29 -0.35 5.50 16 33 H 0.02 0.46 6.16 -51.93 -0.32 0.14 16 34 H 0.02 0.40 7.43 -51.93 -0.39 0.02 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 283.65 15.07 4.27 4.27 Total: -1.00 -30.38 283.65 -8.02 -38.40 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -4.38 Total: 11.63 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -3.59 Total: -22.27 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.34 Total: -48.72 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.38 -8.02 -38.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.452 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds