Wall clock time and date at job start Mon Mar 30 2020 07:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36827 * 125.06158 * 2 1 4 4 C 1.34241 * 109.93323 * 179.97438 * 3 2 1 5 5 C 1.46490 * 106.99016 * 359.97438 * 4 3 2 6 6 C 1.39631 * 134.02322 * 180.02562 * 5 4 3 7 7 C 1.36632 * 119.76154 * 179.97438 * 6 5 4 8 8 C 1.38834 * 120.52653 * 359.97438 * 7 6 5 9 9 C 1.37752 * 120.66783 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.10925 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.46826 * 222.80041 * 10 9 8 12 12 N 1.46904 * 109.47041 * 102.80224 * 10 9 8 13 13 C 1.53001 * 109.47203 * 342.80268 * 10 9 8 14 14 C 1.50701 * 109.46909 * 185.00234 * 13 10 9 15 15 H 1.08001 * 120.00020 * 359.97438 * 14 13 10 16 16 C 1.37873 * 119.99699 * 180.02562 * 14 13 10 17 17 N 1.31514 * 119.99825 * 179.72184 * 16 14 13 18 18 Si 1.86797 * 120.00275 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47423 * 269.72658 * 18 16 14 20 20 H 1.48503 * 109.46924 * 29.72984 * 18 16 14 21 21 H 1.48504 * 109.47525 * 149.72456 * 18 16 14 22 22 C 1.37691 * 125.06243 * 180.26858 * 2 1 3 23 23 H 1.09003 * 109.47094 * 95.75579 * 1 2 3 24 24 H 1.09002 * 109.47121 * 215.75380 * 1 2 3 25 25 H 1.08993 * 109.47471 * 335.75657 * 1 2 3 26 26 H 1.08007 * 125.03321 * 0.02562 * 3 2 1 27 27 H 1.07992 * 126.50584 * 179.97438 * 4 3 2 28 28 H 1.07998 * 120.12564 * 359.97438 * 6 5 4 29 29 H 1.08002 * 119.73567 * 180.02562 * 7 6 5 30 30 H 1.08002 * 119.66491 * 179.97438 * 8 7 6 31 31 H 1.00901 * 110.99906 * 176.04424 * 12 10 9 32 32 H 1.00895 * 110.99754 * 300.00273 * 12 10 9 33 33 H 1.08995 * 109.47031 * 65.00194 * 13 10 9 34 34 H 1.09003 * 109.46746 * 304.99976 * 13 10 9 35 35 H 0.97001 * 120.00095 * 180.27104 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1200 0.0000 4 6 3.5469 0.7696 0.0006 5 6 3.5945 -0.6945 0.0016 6 6 4.6295 -1.6317 0.0029 7 6 4.3361 -2.9662 0.0042 8 6 3.0167 -3.3981 0.0046 9 6 1.9803 -2.4907 0.0033 10 6 0.5527 -2.9734 0.0032 11 1 -0.0327 -2.3762 -0.6959 12 7 -0.0100 -2.8382 1.3535 13 6 0.5112 -4.4426 -0.4218 14 6 -0.9227 -4.8908 -0.5408 15 1 -1.7242 -4.1972 -0.3336 16 6 -1.2113 -6.1865 -0.9132 17 7 -2.4625 -6.5792 -1.0117 18 14 0.1750 -7.3863 -1.2710 19 1 0.5274 -7.3202 -2.7120 20 1 1.3624 -7.0286 -0.4540 21 1 -0.2626 -8.7641 -0.9312 22 6 2.2560 -1.1270 -0.0053 23 1 -0.3633 -0.1031 -1.0225 24 1 -0.3633 -0.8340 0.6005 25 1 -0.3634 0.9370 0.4219 26 1 1.8833 2.1355 0.0004 27 1 4.3936 1.4399 0.0003 28 1 5.6583 -1.3031 0.0030 29 1 5.1370 -3.6907 0.0056 30 1 2.8006 -4.4563 0.0052 31 1 -0.9857 -3.0948 1.3659 32 1 0.5158 -3.3829 2.0204 33 1 1.0214 -5.0513 0.3246 34 1 1.0086 -4.5563 -1.3851 35 1 -2.6656 -7.4919 -1.2699 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261092573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:09 Heat of formation + Delta-G solvation = 39.168761 kcal Electronic energy + Delta-G solvation = -17417.583080 eV Core-core repulsion = 14800.913174 eV Total energy + Delta-G solvation = -2616.669905 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.18953 -38.64456 -36.94531 -34.63998 -33.02290 -31.07147 -30.67903 -29.55107 -27.21465 -25.68415 -23.76438 -22.75631 -21.39008 -20.40637 -19.10580 -17.61707 -17.28152 -16.62358 -16.41719 -16.15853 -15.92680 -15.16521 -15.12656 -14.62601 -14.25426 -13.93968 -13.78609 -13.61778 -13.48013 -13.14435 -12.93388 -12.60281 -12.45403 -12.05922 -12.02356 -11.75615 -11.51393 -11.21029 -10.81704 -10.37771 -9.50901 -9.00855 -8.39172 -8.33069 -6.36589 0.28101 0.80944 1.31361 1.33125 1.43501 1.92038 2.11794 2.31387 3.01082 3.05018 3.77636 3.92745 4.00159 4.06864 4.16704 4.29720 4.48031 4.52150 4.62513 4.63949 4.77110 4.87561 4.97667 5.02595 5.10850 5.17818 5.24632 5.35870 5.57093 5.72149 5.77986 5.94158 6.03827 6.18602 6.30298 6.42928 6.57036 6.64294 6.70016 7.28646 8.82274 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029686 B = 0.007096 C = 0.005976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.978080 B = 3944.687916 C = 4684.490793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.482 5.482 3 C 0.050 3.950 4 C -0.224 4.224 5 C -0.136 4.136 6 C -0.083 4.083 7 C -0.151 4.151 8 C -0.121 4.121 9 C -0.090 4.090 10 C 0.149 3.851 11 H 0.063 0.937 12 N -0.823 5.823 13 C -0.032 4.032 14 C -0.523 4.523 15 H 0.044 0.956 16 C 0.012 3.988 17 N -0.945 5.945 18 Si 0.940 3.060 19 H -0.273 1.273 20 H -0.248 1.248 21 H -0.285 1.285 22 C 0.088 3.912 23 H 0.058 0.942 24 H 0.097 0.903 25 H 0.106 0.894 26 H 0.203 0.797 27 H 0.168 0.832 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.117 0.883 31 H 0.344 0.656 32 H 0.336 0.664 33 H 0.022 0.978 34 H 0.010 0.990 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.435 13.668 2.907 18.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.164 5.164 3 C -0.076 4.076 4 C -0.248 4.248 5 C -0.141 4.141 6 C -0.101 4.101 7 C -0.170 4.170 8 C -0.141 4.141 9 C -0.093 4.093 10 C 0.038 3.962 11 H 0.081 0.919 12 N -0.352 5.352 13 C -0.071 4.071 14 C -0.561 4.561 15 H 0.062 0.938 16 C -0.186 4.186 17 N -0.585 5.585 18 Si 0.765 3.235 19 H -0.198 1.198 20 H -0.172 1.172 21 H -0.210 1.210 22 C -0.019 4.019 23 H 0.076 0.924 24 H 0.116 0.884 25 H 0.124 0.876 26 H 0.219 0.781 27 H 0.186 0.814 28 H 0.162 0.838 29 H 0.159 0.841 30 H 0.135 0.865 31 H 0.157 0.843 32 H 0.148 0.852 33 H 0.041 0.959 34 H 0.029 0.971 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.104 14.346 2.806 18.979 hybrid contribution -0.384 -2.095 -0.488 2.185 sum 11.720 12.251 2.317 17.112 Atomic orbital electron populations 1.22432 0.76414 1.06423 1.03076 1.44015 1.06687 1.04115 1.61544 1.22461 0.90377 0.92053 1.02700 1.21930 0.97047 0.91874 1.13983 1.19683 0.92049 0.95129 1.07255 1.20504 0.98637 0.91742 0.99237 1.20839 0.95901 0.96317 1.03919 1.21020 0.92789 0.99018 1.01246 1.19044 0.95411 0.90121 1.04748 1.19968 0.90639 0.94521 0.91086 0.91908 1.59180 1.07781 1.62504 1.05690 1.20266 0.95320 0.95190 0.96339 1.21322 0.92203 0.96718 1.45905 0.93773 1.25857 0.97627 1.00326 0.94767 1.70041 1.19910 1.18744 1.49803 0.85807 0.80446 0.78007 0.79286 1.19819 1.17209 1.21043 1.18264 0.90929 0.88088 1.04637 0.92362 0.88421 0.87592 0.78060 0.81421 0.83771 0.84084 0.86476 0.84314 0.85199 0.95935 0.97133 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.49 9.68 127.77 1.24 2.73 16 2 N -0.48 -14.00 3.18 -539.27 -1.71 -15.72 16 3 C 0.05 1.13 11.27 83.00 0.94 2.07 16 4 C -0.22 -5.46 11.08 23.51 0.26 -5.20 16 5 C -0.14 -4.20 6.37 -20.20 -0.13 -4.33 16 6 C -0.08 -2.30 10.05 22.23 0.22 -2.08 16 7 C -0.15 -4.42 9.97 22.04 0.22 -4.20 16 8 C -0.12 -4.25 9.04 22.30 0.20 -4.05 16 9 C -0.09 -3.36 5.35 -19.77 -0.11 -3.46 16 10 C 0.15 5.94 2.02 44.17 0.09 6.03 16 11 H 0.06 2.65 6.64 -2.39 -0.02 2.63 16 12 N -0.82 -29.84 7.44 -171.79 -1.28 -31.12 16 13 C -0.03 -1.49 2.44 29.85 0.07 -1.42 16 14 C -0.52 -28.84 9.10 25.60 0.23 -28.61 16 15 H 0.04 2.62 7.39 -2.91 -0.02 2.60 16 16 C 0.01 0.68 5.47 84.65 0.46 1.14 16 17 N -0.94 -57.92 13.96 21.45 0.30 -57.62 16 18 Si 0.94 44.17 27.47 68.60 1.88 46.06 16 19 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 20 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 22 C 0.09 3.03 6.75 39.03 0.26 3.29 16 23 H 0.06 1.51 8.12 -2.39 -0.02 1.49 16 24 H 0.10 2.94 4.92 -2.39 -0.01 2.93 16 25 H 0.11 1.96 8.11 -2.39 -0.02 1.94 16 26 H 0.20 2.76 8.06 -2.91 -0.02 2.74 16 27 H 0.17 3.01 8.06 -2.91 -0.02 2.98 16 28 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 29 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 30 H 0.12 4.24 6.06 -2.91 -0.02 4.22 16 31 H 0.34 13.13 7.90 -89.69 -0.71 12.42 16 32 H 0.34 11.91 8.99 -89.70 -0.81 11.11 16 33 H 0.02 1.03 6.16 -2.39 -0.01 1.02 16 34 H 0.01 0.49 7.43 -2.39 -0.02 0.48 16 35 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -66.36 283.65 2.70 -63.66 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.45 Total: 32.83 kcal Atomic # 6 Polarization: -42.06 SS G_CDS: 3.96 Total: -38.09 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -2.69 Total: -104.46 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.06 kcal Total: -66.36 2.70 -63.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.828 kcal (2) G-P(sol) polarization free energy of solvation -66.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds