Wall clock time and date at job start Mon Mar 30 2020 05:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35318 * 119.66927 * 2 1 4 4 C 1.40143 * 120.38868 * 180.02562 * 3 2 1 5 5 C 1.38031 * 119.42049 * 359.97438 * 4 3 2 6 6 C 1.39291 * 119.14112 * 0.02562 * 5 4 3 7 7 C 1.41490 * 133.63966 * 179.97438 * 6 5 4 8 8 C 1.40276 * 126.59878 * 0.03229 * 7 6 5 9 9 H 1.08000 * 120.00266 * 0.02562 * 8 7 6 10 10 C 1.39611 * 120.00007 * 180.02562 * 8 7 6 11 11 N 1.31164 * 119.99719 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00038 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47007 * 90.00177 * 12 10 8 14 14 H 1.48500 * 109.47491 * 210.00111 * 12 10 8 15 15 H 1.48494 * 109.47435 * 330.00531 * 12 10 8 16 16 N 1.35045 * 106.80092 * 180.02562 * 7 6 5 17 17 C 1.30376 * 109.83113 * 359.97438 * 16 7 6 18 18 C 1.50693 * 124.94866 * 180.02562 * 17 16 7 19 19 C 1.53005 * 109.47319 * 82.84445 * 18 17 16 20 20 C 1.53003 * 109.47427 * 322.84709 * 18 17 16 21 21 N 1.36371 * 110.09865 * 0.26690 * 17 16 7 22 22 H 1.08999 * 109.47514 * 96.60890 * 1 2 3 23 23 H 1.09000 * 109.47466 * 216.61176 * 1 2 3 24 24 H 1.09001 * 109.46826 * 336.61320 * 1 2 3 25 25 H 1.08002 * 119.80627 * 359.97438 * 3 2 1 26 26 H 1.08006 * 120.28996 * 180.02562 * 4 3 2 27 27 H 1.07995 * 120.43312 * 180.02562 * 5 4 3 28 28 H 0.97003 * 119.99494 * 180.02562 * 11 10 8 29 29 H 1.09004 * 109.47047 * 202.84153 * 18 17 16 30 30 H 1.08992 * 109.47242 * 179.97438 * 19 18 17 31 31 H 1.09002 * 109.46579 * 59.99688 * 19 18 17 32 32 H 1.08994 * 109.47150 * 300.00273 * 19 18 17 33 33 H 1.08992 * 109.47220 * 180.02562 * 20 18 17 34 34 H 1.09006 * 109.46623 * 300.00012 * 20 18 17 35 35 H 1.08994 * 109.46948 * 59.99785 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1767 1.1758 0.0000 4 6 3.5780 1.1934 -0.0005 5 6 4.2711 -0.0003 -0.0005 6 6 3.5596 -1.1978 -0.0005 7 6 3.9411 -2.5603 -0.0010 8 6 5.2510 -3.0620 -0.0010 9 1 6.0899 -2.3818 -0.0002 10 6 5.4705 -4.4408 -0.0020 11 7 4.4517 -5.2669 -0.0035 12 14 7.2148 -5.1089 -0.0027 13 1 7.6772 -5.2870 1.3973 14 1 7.2434 -6.4177 -0.7037 15 1 8.1107 -4.1532 -0.7020 16 7 2.8014 -3.2847 -0.0013 17 6 1.7702 -2.4870 -0.0005 18 6 0.3316 -2.9357 0.0000 19 6 -0.1011 -3.2597 1.4313 20 6 0.1866 -4.1848 -0.8716 21 7 2.1831 -1.1873 -0.0056 22 1 -0.3634 -0.1183 -1.0208 23 1 -0.3634 -0.8249 0.6129 24 1 -0.3633 0.9433 0.4079 25 1 1.6282 2.1061 -0.0004 26 1 4.1111 2.1328 -0.0001 27 1 5.3511 -0.0059 -0.0005 28 1 4.6042 -6.2249 -0.0038 29 1 -0.2975 -2.1396 -0.3984 30 1 -1.1418 -3.5838 1.4317 31 1 0.0022 -2.3698 2.0523 32 1 0.5279 -4.0556 1.8297 33 1 -0.8539 -4.5091 -0.8716 34 1 0.4949 -3.9540 -1.8914 35 1 0.8157 -4.9808 -0.4732 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261097915.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:06 Heat of formation + Delta-G solvation = 49.354792 kcal Electronic energy + Delta-G solvation = -17751.739779 eV Core-core repulsion = 15135.511573 eV Total energy + Delta-G solvation = -2616.228206 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.83561 -38.03409 -36.62286 -35.03170 -33.81672 -31.71262 -30.17816 -28.10347 -27.85779 -26.56233 -23.65514 -23.16419 -22.20560 -20.46470 -18.84709 -17.31484 -17.05872 -16.70135 -16.34809 -15.95013 -15.57403 -14.94794 -14.72847 -14.39053 -14.06276 -13.88377 -13.28007 -13.13597 -12.97843 -12.94165 -12.70799 -12.50585 -12.37123 -12.17481 -11.91787 -11.91138 -11.83945 -11.49273 -11.30371 -10.59111 -10.16302 -9.56612 -8.36932 -8.25627 -5.94420 0.33838 0.79876 1.39638 1.44644 1.53920 2.25486 2.36431 2.55609 2.84244 3.63949 3.73872 3.84879 4.02899 4.26553 4.29081 4.43688 4.47727 4.50534 4.64264 4.69964 4.82370 4.85969 4.91349 4.98298 5.00524 5.02745 5.21482 5.33772 5.41113 5.47953 5.54290 5.61198 5.78554 5.79108 6.20570 6.41345 6.86142 6.92482 7.21894 7.95332 8.57145 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.021619 B = 0.009393 C = 0.006821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.854579 B = 2980.301917 C = 4103.701728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.025 3.975 3 C -0.138 4.138 4 C -0.220 4.220 5 C -0.043 4.043 6 C -0.168 4.168 7 C 0.167 3.833 8 C -0.463 4.463 9 H 0.080 0.920 10 C 0.023 3.977 11 N -0.793 5.793 12 Si 0.987 3.013 13 H -0.265 1.265 14 H -0.270 1.270 15 H -0.258 1.258 16 N -0.479 5.479 17 C 0.152 3.848 18 C -0.009 4.009 19 C -0.131 4.131 20 C -0.123 4.123 21 N -0.386 5.386 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.108 0.892 25 H 0.165 0.835 26 H 0.142 0.858 27 H 0.122 0.878 28 H 0.275 0.725 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.047 0.953 32 H 0.034 0.966 33 H 0.090 0.910 34 H 0.034 0.966 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.471 6.832 0.274 10.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.075 4.075 3 C -0.159 4.159 4 C -0.240 4.240 5 C -0.063 4.063 6 C -0.269 4.269 7 C 0.038 3.962 8 C -0.498 4.498 9 H 0.098 0.902 10 C -0.194 4.194 11 N -0.419 5.419 12 Si 0.808 3.192 13 H -0.190 1.190 14 H -0.194 1.194 15 H -0.182 1.182 16 N -0.199 5.199 17 C -0.103 4.103 18 C -0.029 4.029 19 C -0.189 4.189 20 C -0.181 4.181 21 N -0.065 5.065 22 H 0.100 0.900 23 H 0.096 0.904 24 H 0.126 0.874 25 H 0.182 0.818 26 H 0.160 0.840 27 H 0.140 0.860 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.115 0.885 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.109 0.891 34 H 0.053 0.947 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.725 5.756 0.258 10.456 hybrid contribution 1.380 0.329 -0.017 1.419 sum -7.345 6.085 0.241 9.541 Atomic orbital electron populations 1.21100 0.86659 1.05270 1.03608 1.20788 0.96106 0.84234 1.06396 1.20693 0.94466 0.96535 1.04255 1.21120 0.94470 0.96848 1.11552 1.20540 0.99089 0.90307 0.96405 1.19559 0.83771 0.96621 1.26980 1.18826 0.93418 0.86234 0.97684 1.18718 0.90693 0.92886 1.47477 0.90166 1.26778 1.03024 0.96820 0.92768 1.70276 1.33420 1.03672 1.34515 0.85140 0.76894 0.77997 0.79181 1.18987 1.19443 1.18165 1.70676 0.96854 1.30772 1.21619 1.24281 0.98583 0.77837 1.09613 1.19895 0.85614 0.99159 0.98189 1.21752 1.02136 1.00860 0.94102 1.21577 1.02051 0.96551 0.97912 1.42473 1.06578 1.05842 1.51589 0.89950 0.90431 0.87382 0.81766 0.84022 0.85970 0.91496 0.87582 0.88491 0.93372 0.94644 0.89090 0.94683 0.94052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.77 8.46 71.23 0.60 -2.16 16 2 C 0.02 0.91 6.80 41.13 0.28 1.19 16 3 C -0.14 -4.63 9.57 22.06 0.21 -4.42 16 4 C -0.22 -8.17 10.15 22.68 0.23 -7.94 16 5 C -0.04 -1.99 10.12 22.47 0.23 -1.76 16 6 C -0.17 -8.97 6.78 39.28 0.27 -8.70 16 7 C 0.17 10.03 6.71 39.95 0.27 10.30 16 8 C -0.46 -27.20 9.33 23.10 0.22 -26.98 16 9 H 0.08 4.46 7.84 -2.91 -0.02 4.43 16 10 C 0.02 1.27 5.49 85.12 0.47 1.73 16 11 N -0.79 -45.87 11.94 21.78 0.26 -45.61 16 12 Si 0.99 41.42 29.56 68.60 2.03 43.45 16 13 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 14 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 15 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 16 N -0.48 -27.75 8.93 -178.88 -1.60 -29.34 16 17 C 0.15 7.39 6.66 137.73 0.92 8.31 16 18 C -0.01 -0.31 2.45 -11.54 -0.03 -0.34 16 19 C -0.13 -4.11 8.78 71.98 0.63 -3.48 16 20 C -0.12 -4.32 8.96 71.98 0.64 -3.67 16 21 N -0.39 -18.27 2.95 -322.76 -0.95 -19.22 16 22 H 0.08 1.87 7.98 -2.39 -0.02 1.85 16 23 H 0.08 1.95 4.79 -2.39 -0.01 1.94 16 24 H 0.11 1.97 7.99 -2.39 -0.02 1.95 16 25 H 0.16 3.94 8.01 -2.91 -0.02 3.92 16 26 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 27 H 0.12 5.27 8.06 -2.91 -0.02 5.25 16 28 H 0.28 14.50 8.30 -92.71 -0.77 13.73 16 29 H 0.11 3.13 4.98 -2.38 -0.01 3.12 16 30 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.05 1.49 7.55 -2.39 -0.02 1.47 16 32 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.04 1.73 8.00 -2.39 -0.02 1.71 16 Total: -1.00 -73.58 289.09 5.75 -67.83 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 1.08 Total: 20.81 kcal Atomic # 6 Polarization: -42.85 SS G_CDS: 4.93 Total: -37.91 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -2.29 Total: -94.18 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -73.58 5.75 -67.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261097915.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.185 kcal (2) G-P(sol) polarization free energy of solvation -73.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds