Wall clock time and date at job start Mon Mar 30 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34235 * 126.49937 * 2 1 4 4 N 1.36830 * 109.92586 * 180.02562 * 3 2 1 5 5 H 0.97000 * 125.06359 * 180.02562 * 4 3 2 6 6 C 1.37683 * 109.87636 * 359.97438 * 4 3 2 7 7 C 1.39126 * 133.50991 * 180.02562 * 6 4 3 8 8 C 1.37756 * 119.77849 * 179.97438 * 7 6 4 9 9 C 1.38828 * 120.66660 * 359.75961 * 8 7 6 10 10 C 1.50700 * 119.74121 * 180.26080 * 9 8 7 11 11 H 1.08993 * 109.47837 * 180.24368 * 10 9 8 12 12 C 1.50708 * 109.46725 * 60.23799 * 10 9 8 13 13 H 1.07998 * 119.99928 * 268.99912 * 12 10 9 14 14 C 1.37877 * 119.99370 * 89.00763 * 12 10 9 15 15 N 1.31506 * 120.00263 * 6.65536 * 14 12 10 16 16 Si 1.86798 * 119.99494 * 186.65811 * 14 12 10 17 17 H 1.48500 * 109.47126 * 89.99988 * 16 14 12 18 18 H 1.48496 * 109.47138 * 209.99581 * 16 14 12 19 19 H 1.48503 * 109.47391 * 329.99875 * 16 14 12 20 20 C 1.52999 * 109.46944 * 300.24454 * 10 9 8 21 21 N 1.46900 * 109.47300 * 185.33823 * 20 10 9 22 22 C 1.36629 * 120.52568 * 0.50514 * 9 8 7 23 23 C 1.39628 * 119.76306 * 359.48304 * 22 9 8 24 24 H 1.09000 * 109.47342 * 269.98020 * 1 2 3 25 25 H 1.09005 * 109.46769 * 29.97920 * 1 2 3 26 26 H 1.08994 * 109.47506 * 149.97842 * 1 2 3 27 27 H 1.07999 * 125.04045 * 0.03121 * 3 2 1 28 28 H 1.07995 * 120.11542 * 0.02562 * 7 6 4 29 29 H 1.08003 * 119.66441 * 179.97438 * 8 7 6 30 30 H 0.97003 * 120.00112 * 180.02562 * 15 14 12 31 31 H 1.08999 * 109.47507 * 305.33883 * 20 10 9 32 32 H 1.09003 * 109.47744 * 65.34220 * 20 10 9 33 33 H 1.00901 * 110.99857 * 56.04681 * 21 20 10 34 34 H 1.00896 * 111.00487 * 179.97438 * 21 20 10 35 35 H 1.08006 * 120.11780 * 179.75171 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3055 1.0791 0.0000 4 7 3.6170 0.6888 -0.0006 5 1 4.3775 1.2908 -0.0003 6 6 3.6963 -0.6858 -0.0004 7 6 4.7588 -1.5839 -0.0003 8 6 4.5095 -2.9387 0.0004 9 6 3.2069 -3.4189 0.0061 10 6 2.9581 -4.9052 0.0127 11 1 1.8847 -5.0941 0.0122 12 6 3.5744 -5.5121 1.2469 13 1 4.5893 -5.8802 1.2185 14 6 2.8424 -5.5975 2.4121 15 7 1.5683 -5.2717 2.4137 16 14 3.6604 -6.1760 3.9887 17 1 4.2159 -5.0066 4.7161 18 1 2.6581 -6.8606 4.8441 19 1 4.7578 -7.1208 3.6592 20 6 3.5869 -5.5331 -1.2327 21 7 3.2364 -6.9584 -1.2928 22 6 2.1486 -2.5548 0.0007 23 6 2.3784 -1.1775 0.0003 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8897 -0.5141 27 1 1.9635 2.1035 0.0005 28 1 5.7757 -1.2203 0.0000 29 1 5.3357 -3.6343 0.0001 30 1 1.0534 -5.3314 3.2336 31 1 3.2113 -5.0288 -2.1230 32 1 4.6708 -5.4273 -1.1853 33 1 2.2357 -7.0858 -1.2725 34 1 3.6399 -7.3961 -2.1074 35 1 1.1379 -2.9356 0.0011 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261098659.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:48 Heat of formation + Delta-G solvation = 24.920988 kcal Electronic energy + Delta-G solvation = -17230.460283 eV Core-core repulsion = 14613.172549 eV Total energy + Delta-G solvation = -2617.287735 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.96083 -38.67420 -35.94742 -34.16202 -33.77472 -31.58775 -30.60987 -28.30718 -27.21940 -26.01032 -23.35396 -23.12669 -21.24607 -19.99403 -18.65183 -18.29487 -16.91097 -16.57299 -16.52580 -15.56213 -15.38952 -15.21278 -14.64605 -14.38739 -14.15061 -13.93856 -13.66972 -13.61645 -13.34029 -12.97535 -12.69586 -12.63270 -12.50744 -12.21519 -11.87813 -11.53724 -11.18455 -10.92242 -10.45210 -10.25362 -9.25112 -8.77737 -8.29687 -7.98806 -6.03143 0.43802 0.98126 1.42182 1.42852 1.52418 1.91349 2.43420 2.49995 3.18596 3.34659 3.96644 4.04394 4.09155 4.34262 4.52572 4.60083 4.61029 4.66120 4.71003 4.89972 4.96384 5.03187 5.08806 5.19455 5.27326 5.31586 5.48666 5.68128 5.83012 5.88517 5.94194 6.04866 6.24970 6.38744 6.53211 6.60686 6.91337 6.93639 7.05279 7.57992 9.07446 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.021037 B = 0.007547 C = 0.006956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.675449 B = 3709.344469 C = 4024.400686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.217 4.217 3 C 0.063 3.937 4 N -0.586 5.586 5 H 0.429 0.571 6 C 0.061 3.939 7 C -0.135 4.135 8 C -0.101 4.101 9 C -0.068 4.068 10 C 0.072 3.928 11 H 0.023 0.977 12 C -0.476 4.476 13 H 0.049 0.951 14 C 0.012 3.988 15 N -0.921 5.921 16 Si 0.941 3.059 17 H -0.284 1.284 18 H -0.288 1.288 19 H -0.267 1.267 20 C 0.089 3.911 21 N -0.842 5.842 22 C -0.101 4.101 23 C -0.128 4.128 24 H 0.055 0.945 25 H 0.089 0.911 26 H 0.044 0.956 27 H 0.212 0.788 28 H 0.142 0.858 29 H 0.122 0.878 30 H 0.254 0.746 31 H 0.006 0.994 32 H 0.058 0.942 33 H 0.336 0.664 34 H 0.340 0.660 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.673 12.514 -6.882 14.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.224 4.224 3 C -0.064 4.064 4 N -0.191 5.191 5 H 0.268 0.732 6 C -0.045 4.045 7 C -0.156 4.156 8 C -0.120 4.120 9 C -0.070 4.070 10 C 0.053 3.947 11 H 0.041 0.959 12 C -0.514 4.514 13 H 0.067 0.933 14 C -0.185 4.185 15 N -0.562 5.562 16 Si 0.768 3.232 17 H -0.210 1.210 18 H -0.214 1.214 19 H -0.192 1.192 20 C -0.041 4.041 21 N -0.372 5.372 22 C -0.120 4.120 23 C -0.133 4.133 24 H 0.074 0.926 25 H 0.108 0.892 26 H 0.063 0.937 27 H 0.229 0.771 28 H 0.160 0.840 29 H 0.140 0.860 30 H 0.063 0.937 31 H 0.024 0.976 32 H 0.077 0.923 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.026 12.554 -6.080 14.274 hybrid contribution -0.107 -0.259 0.293 0.405 sum 2.919 12.296 -5.787 13.899 Atomic orbital electron populations 1.20039 0.88924 1.02351 1.01395 1.20657 0.96367 0.90992 1.14402 1.22087 0.81667 0.99849 1.02780 1.41575 1.08196 1.03823 1.65541 0.73197 1.18266 0.95007 0.84600 1.06635 1.20184 0.97265 0.91554 1.06567 1.20765 0.96430 0.94444 1.00351 1.20048 0.92811 0.97266 0.96889 1.17841 0.96425 0.87402 0.93064 0.95895 1.21034 0.98707 1.36706 0.94984 0.93300 1.25598 0.95182 0.96091 1.01663 1.70056 1.07541 1.51030 1.27537 0.85808 0.78518 0.78157 0.80672 1.20996 1.21430 1.19175 1.21670 0.99331 0.87724 0.95423 1.58452 1.16829 1.14402 1.47509 1.20061 0.97930 0.91504 1.02520 1.19496 0.93863 0.93285 1.06642 0.92587 0.89207 0.93725 0.77137 0.83989 0.85994 0.93669 0.97578 0.92318 0.85200 0.84770 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.93 10.41 71.24 0.74 -1.18 16 2 C -0.22 -7.06 6.32 -18.63 -0.12 -7.18 16 3 C 0.06 1.52 11.73 83.00 0.97 2.49 16 4 N -0.59 -14.96 6.07 -187.62 -1.14 -16.10 16 5 H 0.43 7.32 8.96 -92.71 -0.83 6.49 16 6 C 0.06 2.18 7.28 39.03 0.28 2.47 16 7 C -0.14 -4.82 10.08 22.37 0.23 -4.60 16 8 C -0.10 -4.22 8.83 22.30 0.20 -4.03 16 9 C -0.07 -3.25 4.74 -20.10 -0.10 -3.35 16 10 C 0.07 3.64 2.16 -12.28 -0.03 3.61 16 11 H 0.02 1.31 7.09 -2.39 -0.02 1.30 16 12 C -0.48 -26.50 7.66 25.60 0.20 -26.30 16 13 H 0.05 2.73 7.82 -2.91 -0.02 2.71 16 14 C 0.01 0.71 5.45 84.66 0.46 1.17 16 15 N -0.92 -55.71 12.85 21.45 0.28 -55.44 16 16 Si 0.94 46.04 29.54 68.60 2.03 48.07 16 17 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 18 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 19 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 20 C 0.09 3.79 5.89 86.30 0.51 4.29 16 21 N -0.84 -33.06 9.35 -186.72 -1.75 -34.80 16 22 C -0.10 -4.81 9.66 22.23 0.21 -4.60 16 23 C -0.13 -5.28 6.35 -20.20 -0.13 -5.40 16 24 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.09 1.78 8.14 -2.38 -0.02 1.77 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.21 2.85 8.06 -2.91 -0.02 2.83 16 28 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 29 H 0.12 4.88 7.59 -2.91 -0.02 4.86 16 30 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 31 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.06 2.42 7.54 -2.39 -0.02 2.41 16 33 H 0.34 13.16 8.99 -89.69 -0.81 12.35 16 34 H 0.34 10.66 9.08 -89.70 -0.81 9.84 16 35 H 0.09 4.43 7.91 -2.91 -0.02 4.41 16 Total: -1.00 -70.56 297.67 1.52 -69.04 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: -1.33 Total: 31.83 kcal Atomic # 6 Polarization: -46.03 SS G_CDS: 3.43 Total: -42.60 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -2.61 Total: -106.34 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -70.56 1.52 -69.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261098659.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.957 kcal (2) G-P(sol) polarization free energy of solvation -70.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds