Wall clock time and date at job start Mon Mar 30 2020 06:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46996 * 2 1 4 4 N 1.46497 * 109.47162 * 119.99970 * 2 1 3 5 5 N 1.39870 * 125.45917 * 292.07080 * 4 2 1 6 6 C 1.30249 * 110.08415 * 180.30288 * 5 4 2 7 7 C 1.45927 * 107.78239 * 359.79300 * 6 5 4 8 8 C 1.39946 * 134.02704 * 179.97438 * 7 6 5 9 9 C 1.36464 * 119.63388 * 180.02562 * 8 7 6 10 10 C 1.38968 * 120.62751 * 359.97438 * 9 8 7 11 11 C 1.36589 * 120.81572 * 0.02562 * 10 9 8 12 12 C 1.50704 * 120.07456 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.47364 * 258.40878 * 12 11 10 14 14 H 1.08008 * 119.99887 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00399 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99965 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00362 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47195 * 89.99834 * 17 15 13 19 19 H 1.48503 * 109.47387 * 210.00112 * 17 15 13 20 20 H 1.48504 * 109.47074 * 329.99736 * 17 15 13 21 21 C 1.37030 * 125.46275 * 112.01789 * 4 2 1 22 22 H 1.09007 * 109.47266 * 60.00087 * 1 2 3 23 23 H 1.08997 * 109.47399 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47310 * 300.00297 * 1 2 3 25 25 H 1.08997 * 109.47074 * 240.00190 * 2 1 3 26 26 H 1.09004 * 109.46793 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.47042 * 300.00051 * 3 2 1 28 28 H 1.08995 * 109.47333 * 59.99718 * 3 2 1 29 29 H 1.07994 * 126.10567 * 179.77636 * 6 5 4 30 30 H 1.07996 * 120.18276 * 0.02562 * 8 7 6 31 31 H 1.07997 * 119.69018 * 180.02562 * 9 8 7 32 32 H 1.08003 * 119.59295 * 180.02562 * 10 9 8 33 33 H 1.09005 * 109.46853 * 18.40334 * 12 11 10 34 34 H 1.09001 * 109.47075 * 138.40186 * 12 11 10 35 35 H 0.97001 * 120.00402 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 7 1.8852 -0.2301 2.5101 6 6 2.4318 -1.0745 3.3376 7 6 2.9685 -2.1824 2.5539 8 6 3.6514 -3.3606 2.8762 9 6 4.0284 -4.2156 1.8816 10 6 3.7401 -3.9273 0.5531 11 6 3.0747 -2.7837 0.2137 12 6 2.7703 -2.4879 -1.2323 13 6 3.7551 -1.4746 -1.7560 14 1 4.5243 -1.0835 -1.1065 15 6 3.6735 -1.0460 -3.0638 16 7 2.7366 -1.5218 -3.8546 17 14 4.8938 0.2107 -3.7127 18 1 6.0744 -0.4914 -4.2774 19 1 4.2485 1.0256 -4.7733 20 1 5.3288 1.0970 -2.6034 21 6 2.6778 -1.8917 1.2071 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 2.4796 -0.9728 4.4116 30 1 3.8788 -3.5920 3.9063 31 1 4.5551 -5.1253 2.1293 32 1 4.0459 -4.6160 -0.2206 33 1 2.8488 -3.4057 -1.8152 34 1 1.7593 -2.0894 -1.3166 35 1 2.6789 -1.2200 -4.7746 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261115722.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:35 Heat of formation + Delta-G solvation = 58.039825 kcal Electronic energy + Delta-G solvation = -17827.664230 eV Core-core repulsion = 15211.812636 eV Total energy + Delta-G solvation = -2615.851594 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -42.13900 -38.27886 -36.80140 -35.04985 -33.16142 -31.00615 -30.22601 -28.59688 -28.19584 -25.27677 -23.80989 -22.86801 -22.55691 -20.17722 -18.52670 -17.98402 -17.21851 -16.51371 -16.00662 -15.97968 -15.73169 -15.24112 -14.48107 -14.45796 -14.15615 -13.94417 -13.50560 -13.22044 -13.15687 -12.92532 -12.74660 -12.56553 -12.55184 -12.28976 -12.22963 -11.87471 -11.55749 -11.44625 -11.07985 -10.67144 -10.60541 -9.42170 -8.56232 -8.16969 -6.33066 0.22430 0.78156 1.35031 1.37186 1.46759 1.62413 1.74889 2.36738 3.05453 3.08973 3.63379 3.81914 3.98759 4.07734 4.19910 4.26963 4.38440 4.52293 4.60850 4.64004 4.71392 4.77285 4.85846 4.95306 5.05676 5.15863 5.20483 5.26718 5.35237 5.41697 5.69309 5.73820 5.78983 5.95555 6.12088 6.19022 6.33356 6.76146 6.89339 7.34397 8.86550 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.020292 B = 0.009952 C = 0.007832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.523527 B = 2812.745490 C = 3574.278281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.128 3.872 3 C -0.140 4.140 4 N -0.395 5.395 5 N -0.281 5.281 6 C 0.067 3.933 7 C -0.204 4.204 8 C -0.056 4.056 9 C -0.155 4.155 10 C -0.099 4.099 11 C -0.097 4.097 12 C 0.061 3.939 13 C -0.514 4.514 14 H 0.040 0.960 15 C 0.022 3.978 16 N -0.918 5.918 17 Si 0.945 3.055 18 H -0.274 1.274 19 H -0.276 1.276 20 H -0.272 1.272 21 C 0.107 3.893 22 H 0.084 0.916 23 H 0.042 0.958 24 H 0.067 0.933 25 H 0.122 0.878 26 H 0.037 0.963 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.236 0.764 30 H 0.163 0.837 31 H 0.154 0.846 32 H 0.123 0.877 33 H 0.006 0.994 34 H 0.009 0.991 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.585 -0.147 11.810 11.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.027 3.973 3 C -0.198 4.198 4 N -0.183 5.183 5 N -0.093 5.093 6 C -0.129 4.129 7 C -0.212 4.212 8 C -0.076 4.076 9 C -0.174 4.174 10 C -0.120 4.120 11 C -0.101 4.101 12 C 0.024 3.976 13 C -0.552 4.552 14 H 0.059 0.941 15 C -0.178 4.178 16 N -0.557 5.557 17 Si 0.770 3.230 18 H -0.200 1.200 19 H -0.201 1.201 20 H -0.196 1.196 21 C -0.008 4.008 22 H 0.102 0.898 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.139 0.861 26 H 0.056 0.944 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.252 0.748 30 H 0.180 0.820 31 H 0.172 0.828 32 H 0.141 0.859 33 H 0.024 0.976 34 H 0.027 0.973 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.367 1.102 11.358 11.493 hybrid contribution 0.910 -0.149 -1.022 1.377 sum -0.457 0.953 10.335 10.389 Atomic orbital electron populations 1.22047 0.93525 1.01671 1.03213 1.21912 0.95325 0.94783 0.85324 1.21901 1.00394 0.94529 1.02982 1.48519 1.49292 1.16156 1.04362 1.76314 1.20928 1.23799 0.88301 1.25632 0.96419 0.90036 1.00822 1.20344 1.09304 1.00179 0.91347 1.20586 0.95405 0.90757 1.00862 1.20921 1.03484 1.01622 0.91423 1.20829 0.97653 0.95723 0.97817 1.19341 1.01077 0.94487 0.95150 1.18128 0.95758 0.96006 0.87687 1.21072 1.14242 1.23871 0.96011 0.94118 1.25637 0.97049 0.98169 0.96908 1.70041 1.34074 1.44544 1.07091 0.85749 0.79523 0.79445 0.78280 1.19988 1.20095 1.19636 1.19016 0.97013 0.88698 0.96070 0.89769 0.93907 0.91388 0.86060 0.94376 0.90067 0.91188 0.74831 0.81998 0.82830 0.85907 0.97554 0.97263 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.14 9.52 71.98 0.69 -4.46 16 2 C 0.13 5.25 3.31 44.99 0.15 5.40 16 3 C -0.14 -5.16 9.31 71.98 0.67 -4.48 16 4 N -0.40 -16.48 3.34 -319.19 -1.07 -17.55 16 5 N -0.28 -10.26 12.14 -53.09 -0.64 -10.90 16 6 C 0.07 2.03 12.28 86.92 1.07 3.10 16 7 C -0.20 -7.11 6.37 -20.24 -0.13 -7.24 16 8 C -0.06 -1.59 10.07 22.27 0.22 -1.37 16 9 C -0.16 -4.64 9.97 22.03 0.22 -4.43 16 10 C -0.10 -3.82 9.58 22.06 0.21 -3.61 16 11 C -0.10 -4.40 5.06 -20.00 -0.10 -4.50 16 12 C 0.06 3.19 4.41 29.10 0.13 3.31 16 13 C -0.51 -28.30 7.48 25.60 0.19 -28.10 16 14 H 0.04 2.32 7.74 -2.91 -0.02 2.29 16 15 C 0.02 1.20 5.46 84.65 0.46 1.66 16 16 N -0.92 -52.44 13.29 21.45 0.28 -52.15 16 17 Si 0.94 43.22 29.54 68.60 2.03 45.24 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 21 C 0.11 4.61 6.78 39.21 0.27 4.88 16 22 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 23 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.12 5.92 3.18 -2.39 -0.01 5.91 16 26 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 28 H 0.07 2.33 8.11 -2.39 -0.02 2.31 16 29 H 0.24 4.35 8.06 -2.91 -0.02 4.32 16 30 H 0.16 3.07 8.06 -2.91 -0.02 3.04 16 31 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 32 H 0.12 4.51 7.99 -2.91 -0.02 4.48 16 33 H 0.01 0.34 7.96 -2.38 -0.02 0.32 16 34 H 0.01 0.52 6.19 -2.39 -0.01 0.50 16 35 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -64.93 293.58 5.72 -59.21 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 1.08 Total: 15.98 kcal Atomic # 6 Polarization: -43.88 SS G_CDS: 4.04 Total: -39.84 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -1.43 Total: -80.60 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -64.93 5.72 -59.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115722.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.252 kcal (2) G-P(sol) polarization free energy of solvation -64.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds