Wall clock time and date at job start Mon Mar 30 2020 07:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99810 * 2 1 4 4 H 1.48500 * 109.47111 * 269.99900 * 3 2 1 5 5 H 1.48504 * 109.47001 * 29.99519 * 3 2 1 6 6 H 1.48496 * 109.47451 * 149.99750 * 3 2 1 7 7 C 1.37870 * 120.00426 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00103 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00212 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47401 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47499 * 185.00028 * 10 9 7 12 12 C 1.53000 * 109.46927 * 299.99949 * 11 10 9 13 13 C 1.53003 * 109.47033 * 300.00183 * 12 11 10 14 14 C 1.50703 * 109.47061 * 180.02562 * 13 12 11 15 15 C 1.38234 * 120.00257 * 119.99964 * 14 13 12 16 16 C 1.38238 * 119.99675 * 180.27927 * 15 14 13 17 17 C 1.38228 * 120.00120 * 359.47825 * 16 15 14 18 18 C 1.38234 * 120.00000 * 0.52176 * 17 16 15 19 19 C 1.38234 * 119.99503 * 300.01565 * 14 13 12 20 20 C 1.52998 * 109.47547 * 59.99757 * 13 12 11 21 21 C 1.52997 * 109.47338 * 64.99729 * 10 9 7 22 22 H 0.97002 * 120.00393 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47572 * 60.00082 * 9 7 2 24 24 H 1.08996 * 109.47061 * 299.99668 * 9 7 2 25 25 H 1.09007 * 109.46763 * 304.99768 * 10 9 7 26 26 H 1.08995 * 109.47095 * 179.97438 * 11 10 9 27 27 H 1.09000 * 109.47156 * 59.99659 * 11 10 9 28 28 H 1.08994 * 109.46964 * 180.02562 * 12 11 10 29 29 H 1.09005 * 109.47336 * 59.99524 * 12 11 10 30 30 H 1.09005 * 109.46522 * 299.99840 * 13 12 11 31 31 H 1.08002 * 119.99744 * 359.97438 * 15 14 13 32 32 H 1.08004 * 119.99577 * 179.72816 * 16 15 14 33 33 H 1.07999 * 119.99932 * 180.24104 * 17 16 15 34 34 H 1.08001 * 120.00310 * 179.72161 * 18 17 16 35 35 H 1.07997 * 120.00460 * 0.02562 * 19 14 13 36 36 H 1.09005 * 109.46689 * 60.00179 * 20 13 12 37 37 H 1.08992 * 109.46988 * 180.02562 * 20 13 12 38 38 H 1.08995 * 109.47490 * 180.02562 * 21 10 9 39 39 H 1.09002 * 109.47253 * 300.00596 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0023 11 6 5.5465 -2.6381 0.1286 12 6 6.1570 -1.8822 -1.0533 13 6 5.7526 -2.5672 -2.3604 14 6 6.3544 -1.8230 -3.5245 15 6 7.2223 -2.4700 -4.3842 16 6 7.7788 -1.7857 -5.4487 17 6 7.4590 -0.4576 -5.6597 18 6 6.5912 0.1894 -4.7999 19 6 6.0388 -0.4934 -3.7323 20 6 4.2279 -2.5655 -2.4867 21 6 3.6175 -3.3214 -1.3047 22 1 -0.4851 0.8400 -0.0004 23 1 3.8746 -0.6799 0.8911 24 1 3.8752 -0.6803 -0.8888 25 1 3.5868 -3.1748 0.8444 26 1 5.9098 -3.6657 0.1299 27 1 5.8345 -2.1501 1.0597 28 1 7.2432 -1.8838 -0.9636 29 1 5.7935 -0.8545 -1.0542 30 1 6.1161 -3.5948 -2.3595 31 1 7.4694 -3.5087 -4.2214 32 1 8.4602 -2.2900 -6.1178 33 1 7.8907 0.0759 -6.4936 34 1 6.3448 1.2283 -4.9621 35 1 5.3613 0.0123 -3.0603 36 1 3.8645 -1.5378 -2.4875 37 1 3.9399 -3.0539 -3.4175 38 1 3.9805 -4.3491 -1.3037 39 1 2.5312 -3.3202 -1.3947 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261126207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:26 Heat of formation + Delta-G solvation = -10.594465 kcal Electronic energy + Delta-G solvation = -17764.865228 eV Core-core repulsion = 15249.577771 eV Total energy + Delta-G solvation = -2515.287457 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 5.81 seconds Orbital eigenvalues (eV) -39.74356 -37.88161 -33.47789 -32.08857 -30.79093 -30.22786 -29.35420 -27.07798 -23.25389 -22.66339 -22.08743 -21.83041 -20.19805 -17.62690 -16.78399 -16.72484 -15.29253 -15.00042 -14.55292 -14.16759 -13.69867 -13.60445 -13.29123 -13.06656 -12.89258 -12.31277 -12.13365 -11.86039 -11.66410 -11.57564 -11.19719 -11.01944 -10.92316 -10.65456 -10.47771 -9.97560 -9.78821 -9.62756 -9.35903 -9.19897 -8.92012 -8.80953 -8.48686 -8.46648 -5.99792 -3.95758 1.48796 1.51112 3.31036 3.39524 3.42996 3.90769 4.48283 4.83970 4.95023 5.08169 5.20286 5.29586 5.32070 5.35720 5.55904 5.63900 5.65700 5.82804 5.90235 6.01763 6.05813 6.11019 6.13206 6.14198 6.19471 6.40210 6.51880 6.55402 6.60207 6.64312 6.73452 6.77630 6.83756 6.91709 7.07328 7.14062 7.19840 7.40540 7.53494 7.86960 8.60681 9.06517 9.63861 11.13881 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.023341 B = 0.007176 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.316660 B = 3900.735014 C = 4551.535995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.873 3.127 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.511 4.511 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.076 4.076 11 C -0.114 4.114 12 C -0.109 4.109 13 C -0.047 4.047 14 C -0.065 4.065 15 C -0.122 4.122 16 C -0.123 4.123 17 C -0.133 4.133 18 C -0.119 4.119 19 C -0.112 4.112 20 C -0.108 4.108 21 C -0.102 4.102 22 H 0.261 0.739 23 H 0.011 0.989 24 H 0.017 0.983 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.040 0.960 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.235 -3.515 -8.091 17.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.135 4.135 3 Si 0.700 3.300 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.549 4.549 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.094 4.094 11 C -0.152 4.152 12 C -0.146 4.146 13 C -0.066 4.066 14 C -0.065 4.065 15 C -0.140 4.140 16 C -0.141 4.141 17 C -0.151 4.151 18 C -0.137 4.137 19 C -0.130 4.130 20 C -0.145 4.145 21 C -0.139 4.139 22 H 0.071 0.929 23 H 0.029 0.971 24 H 0.036 0.964 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 15.080 -3.398 -8.084 17.444 hybrid contribution 0.331 1.013 -0.072 1.068 sum 15.411 -2.385 -8.156 17.598 Atomic orbital electron populations 1.69916 1.06249 1.26658 1.51762 1.25012 0.94639 0.98944 0.94911 0.86884 0.80528 0.84099 0.78463 1.20359 1.21534 1.19003 1.21177 0.89626 0.94205 1.49846 0.90976 1.19710 0.96918 0.92029 0.96096 1.21014 0.92508 0.99006 0.96920 1.21617 0.97213 0.99033 0.97308 1.21590 0.98974 1.00381 0.93666 1.20239 0.96428 0.98075 0.91828 1.20061 0.95976 0.94177 0.96249 1.21061 0.97895 0.99692 0.95391 1.21068 1.00246 0.94807 0.98005 1.21063 0.99232 0.95085 0.99712 1.21159 0.97465 0.99858 0.95248 1.21166 0.99630 0.94401 0.97814 1.21590 0.92454 1.02541 0.97952 1.21421 1.01497 0.96639 0.94366 0.92910 0.97065 0.96444 0.92111 0.93157 0.92559 0.93060 0.91257 0.91125 0.86411 0.86556 0.86609 0.86333 0.85746 0.90487 0.93080 0.94110 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.93 13.96 55.43 0.77 -27.16 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.87 21.71 27.47 -169.99 -4.67 17.04 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.51 -14.20 8.96 -34.44 -0.31 -14.51 16 8 H 0.07 2.16 7.30 -52.48 -0.38 1.78 16 9 C -0.01 -0.24 2.81 -27.88 -0.08 -0.32 16 10 C -0.08 -1.47 2.61 -90.62 -0.24 -1.71 16 11 C -0.11 -1.84 5.45 -26.73 -0.15 -1.99 16 12 C -0.11 -1.68 4.74 -26.73 -0.13 -1.80 16 13 C -0.05 -0.70 2.36 -91.77 -0.22 -0.92 16 14 C -0.06 -0.93 4.78 -104.62 -0.50 -1.43 16 15 C -0.12 -1.55 9.67 -39.58 -0.38 -1.93 16 16 C -0.12 -1.43 10.05 -39.58 -0.40 -1.82 16 17 C -0.13 -1.56 10.05 -39.59 -0.40 -1.96 16 18 C -0.12 -1.56 10.05 -39.58 -0.40 -1.95 16 19 C -0.11 -1.66 8.71 -39.58 -0.34 -2.01 16 20 C -0.11 -1.84 4.74 -26.73 -0.13 -1.97 16 21 C -0.10 -1.85 5.26 -26.73 -0.14 -1.99 16 22 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.01 0.27 7.20 -51.93 -0.37 -0.11 16 24 H 0.02 0.40 4.26 -51.93 -0.22 0.18 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.18 5.79 -51.93 -0.30 0.87 16 30 H 0.07 0.97 7.88 -51.93 -0.41 0.56 16 31 H 0.12 1.28 7.95 -52.49 -0.42 0.86 16 32 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.12 1.95 7.11 -52.49 -0.37 1.58 16 36 H 0.08 1.49 5.57 -51.93 -0.29 1.20 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.54 6.95 -51.93 -0.36 1.18 16 LS Contribution 299.23 15.07 4.51 4.51 Total: -1.00 -29.83 299.23 -9.39 -39.22 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.10 Total: 0.91 kcal Atomic # 6 Polarization: -30.62 SS G_CDS: -3.90 Total: -34.52 kcal Atomic # 7 Polarization: -27.93 SS G_CDS: 0.77 Total: -27.16 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.83 -9.39 -39.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.622 kcal (2) G-P(sol) polarization free energy of solvation -29.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.81 seconds