Wall clock time and date at job start Mon Mar 30 2020 07:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99810 * 2 1 4 4 H 1.48500 * 109.47111 * 269.99900 * 3 2 1 5 5 H 1.48504 * 109.47001 * 29.99519 * 3 2 1 6 6 H 1.48496 * 109.47451 * 149.99750 * 3 2 1 7 7 C 1.37870 * 120.00426 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00103 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00212 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47401 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47499 * 185.00028 * 10 9 7 12 12 C 1.53000 * 109.46927 * 299.99949 * 11 10 9 13 13 C 1.53003 * 109.47033 * 300.00183 * 12 11 10 14 14 C 1.50703 * 109.47061 * 180.02562 * 13 12 11 15 15 C 1.38234 * 120.00257 * 119.99964 * 14 13 12 16 16 C 1.38238 * 119.99675 * 180.27927 * 15 14 13 17 17 C 1.38228 * 120.00120 * 359.47825 * 16 15 14 18 18 C 1.38234 * 120.00000 * 0.52176 * 17 16 15 19 19 C 1.38234 * 119.99503 * 300.01565 * 14 13 12 20 20 C 1.52998 * 109.47547 * 59.99757 * 13 12 11 21 21 C 1.52997 * 109.47338 * 64.99729 * 10 9 7 22 22 H 0.97002 * 120.00393 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47572 * 60.00082 * 9 7 2 24 24 H 1.08996 * 109.47061 * 299.99668 * 9 7 2 25 25 H 1.09007 * 109.46763 * 304.99768 * 10 9 7 26 26 H 1.08995 * 109.47095 * 179.97438 * 11 10 9 27 27 H 1.09000 * 109.47156 * 59.99659 * 11 10 9 28 28 H 1.08994 * 109.46964 * 180.02562 * 12 11 10 29 29 H 1.09005 * 109.47336 * 59.99524 * 12 11 10 30 30 H 1.09005 * 109.46522 * 299.99840 * 13 12 11 31 31 H 1.08002 * 119.99744 * 359.97438 * 15 14 13 32 32 H 1.08004 * 119.99577 * 179.72816 * 16 15 14 33 33 H 1.07999 * 119.99932 * 180.24104 * 17 16 15 34 34 H 1.08001 * 120.00310 * 179.72161 * 18 17 16 35 35 H 1.07997 * 120.00460 * 0.02562 * 19 14 13 36 36 H 1.09005 * 109.46689 * 60.00179 * 20 13 12 37 37 H 1.08992 * 109.46988 * 180.02562 * 20 13 12 38 38 H 1.08995 * 109.47490 * 180.02562 * 21 10 9 39 39 H 1.09002 * 109.47253 * 300.00596 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0023 11 6 5.5465 -2.6381 0.1286 12 6 6.1570 -1.8822 -1.0533 13 6 5.7526 -2.5672 -2.3604 14 6 6.3544 -1.8230 -3.5245 15 6 7.2223 -2.4700 -4.3842 16 6 7.7788 -1.7857 -5.4487 17 6 7.4590 -0.4576 -5.6597 18 6 6.5912 0.1894 -4.7999 19 6 6.0388 -0.4934 -3.7323 20 6 4.2279 -2.5655 -2.4867 21 6 3.6175 -3.3214 -1.3047 22 1 -0.4851 0.8400 -0.0004 23 1 3.8746 -0.6799 0.8911 24 1 3.8752 -0.6803 -0.8888 25 1 3.5868 -3.1748 0.8444 26 1 5.9098 -3.6657 0.1299 27 1 5.8345 -2.1501 1.0597 28 1 7.2432 -1.8838 -0.9636 29 1 5.7935 -0.8545 -1.0542 30 1 6.1161 -3.5948 -2.3595 31 1 7.4694 -3.5087 -4.2214 32 1 8.4602 -2.2900 -6.1178 33 1 7.8907 0.0759 -6.4936 34 1 6.3448 1.2283 -4.9621 35 1 5.3613 0.0123 -3.0603 36 1 3.8645 -1.5378 -2.4875 37 1 3.9399 -3.0539 -3.4175 38 1 3.9805 -4.3491 -1.3037 39 1 2.5312 -3.3202 -1.3947 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261126207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:19 Heat of formation + Delta-G solvation = -25.110890 kcal Electronic energy + Delta-G solvation = -17765.494707 eV Core-core repulsion = 15249.577771 eV Total energy + Delta-G solvation = -2515.916936 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.89218 -39.11424 -35.20784 -33.82396 -31.73389 -31.58974 -30.85487 -28.67103 -24.77734 -23.99405 -23.38405 -23.12558 -21.36165 -19.18398 -18.86453 -17.74073 -16.57296 -16.30057 -16.05847 -15.63138 -15.14185 -14.88488 -14.72574 -14.27500 -14.11609 -13.98073 -13.59392 -13.24830 -13.10659 -12.96327 -12.79247 -12.54160 -12.09956 -12.00954 -11.85198 -11.68544 -11.54699 -11.33656 -10.89302 -10.77305 -10.68134 -10.62877 -9.76410 -9.49665 -8.26191 -6.26404 0.52345 0.55409 1.31427 1.33407 1.44867 2.35679 2.94027 3.09614 3.72982 3.87220 4.01437 4.15817 4.20672 4.29492 4.36368 4.46215 4.52328 4.63667 4.68448 4.72739 4.75256 4.76637 4.79719 5.06345 5.10313 5.18075 5.21383 5.24842 5.26598 5.30926 5.37531 5.49266 5.58154 5.64971 5.67703 5.69122 5.75966 5.81513 5.89012 6.19666 6.36787 6.81147 7.36552 8.90880 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.023341 B = 0.007176 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.316660 B = 3900.735014 C = 4551.535995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.003 3.997 3 Si 0.937 3.063 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.248 1.248 7 C -0.512 4.512 8 H 0.034 0.966 9 C -0.005 4.005 10 C -0.077 4.077 11 C -0.107 4.107 12 C -0.107 4.107 13 C -0.038 4.038 14 C -0.080 4.080 15 C -0.125 4.125 16 C -0.122 4.122 17 C -0.132 4.132 18 C -0.131 4.131 19 C -0.137 4.137 20 C -0.103 4.103 21 C -0.099 4.099 22 H 0.263 0.737 23 H 0.007 0.993 24 H 0.023 0.977 25 H 0.047 0.953 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.139 0.861 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.128 0.872 35 H 0.102 0.898 36 H 0.044 0.956 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.736 -3.859 -9.310 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.192 4.192 3 Si 0.762 3.238 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.172 1.172 7 C -0.550 4.550 8 H 0.052 0.948 9 C -0.042 4.042 10 C -0.095 4.095 11 C -0.144 4.144 12 C -0.144 4.144 13 C -0.056 4.056 14 C -0.080 4.080 15 C -0.143 4.143 16 C -0.140 4.140 17 C -0.150 4.150 18 C -0.149 4.149 19 C -0.155 4.155 20 C -0.140 4.140 21 C -0.136 4.136 22 H 0.072 0.928 23 H 0.025 0.975 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.157 0.843 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.146 0.854 35 H 0.120 0.880 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 18.598 -3.752 -9.300 21.129 hybrid contribution -0.807 1.048 0.262 1.348 sum 17.791 -2.704 -9.039 20.137 Atomic orbital electron populations 1.70071 1.08141 1.27721 1.53718 1.25916 0.95454 1.03042 0.94824 0.85838 0.79692 0.79211 0.79088 1.19347 1.21183 1.17209 1.21502 0.92184 0.92713 1.48569 0.94801 1.19646 0.93625 0.95049 0.95901 1.20974 0.95337 0.96177 0.97062 1.21551 0.93972 1.00980 0.97891 1.21567 1.00170 0.99033 0.93635 1.20141 0.94164 0.99345 0.91975 1.20040 0.97155 0.93993 0.96810 1.21335 0.97144 1.00730 0.95077 1.21468 0.99941 0.94737 0.97817 1.21420 0.98286 0.95498 0.99818 1.21367 0.97862 1.00553 0.95148 1.21154 1.00457 0.95199 0.98659 1.21496 0.94658 1.00316 0.97576 1.21359 0.99304 0.98496 0.94454 0.92827 0.97484 0.95842 0.93407 0.90376 0.92217 0.90813 0.93451 0.88907 0.84279 0.83539 0.83979 0.85392 0.87987 0.93692 0.92433 0.91108 0.94520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 2 C 0.00 0.21 5.47 84.65 0.46 0.67 16 3 Si 0.94 45.57 27.47 68.60 1.88 47.46 16 4 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 7 C -0.51 -29.72 8.96 25.60 0.23 -29.50 16 8 H 0.03 2.17 7.30 -2.91 -0.02 2.14 16 9 C -0.01 -0.24 2.81 29.85 0.08 -0.16 16 10 C -0.08 -2.97 2.61 -10.79 -0.03 -3.00 16 11 C -0.11 -3.18 5.45 30.59 0.17 -3.01 16 12 C -0.11 -3.05 4.74 30.60 0.15 -2.91 16 13 C -0.04 -1.04 2.36 -11.54 -0.03 -1.07 16 14 C -0.08 -2.13 4.78 -19.87 -0.09 -2.23 16 15 C -0.13 -2.72 9.67 22.27 0.22 -2.51 16 16 C -0.12 -2.33 10.05 22.27 0.22 -2.11 16 17 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 18 C -0.13 -3.23 10.05 22.27 0.22 -3.01 16 19 C -0.14 -3.96 8.71 22.27 0.19 -3.77 16 20 C -0.10 -3.49 4.74 30.59 0.15 -3.34 16 21 C -0.10 -3.60 5.26 30.59 0.16 -3.44 16 22 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 23 H 0.01 0.33 7.20 -2.39 -0.02 0.31 16 24 H 0.02 1.09 4.26 -2.39 -0.01 1.08 16 25 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 26 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 29 H 0.05 1.56 5.79 -2.38 -0.01 1.55 16 30 H 0.09 2.16 7.88 -2.38 -0.02 2.14 16 31 H 0.14 2.38 7.95 -2.91 -0.02 2.36 16 32 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 33 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 34 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 35 H 0.10 3.32 7.11 -2.91 -0.02 3.30 16 36 H 0.04 1.80 5.57 -2.38 -0.01 1.78 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.04 1.59 6.95 -2.39 -0.02 1.57 16 Total: -1.00 -66.98 299.23 5.46 -61.52 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.95 Total: 13.78 kcal Atomic # 6 Polarization: -64.17 SS G_CDS: 2.32 Total: -61.84 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: 0.30 Total: -60.91 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.88 Total: 47.46 kcal Total: -66.98 5.46 -61.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.404 kcal (2) G-P(sol) polarization free energy of solvation -66.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds