Wall clock time and date at job start Mon Mar 30 2020 07:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86809 * 119.99468 * 2 1 4 4 H 1.48497 * 109.46863 * 272.81545 * 3 2 1 5 5 H 1.48496 * 109.47042 * 32.81826 * 3 2 1 6 6 H 1.48503 * 109.46833 * 152.81788 * 3 2 1 7 7 C 1.37873 * 120.00528 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99304 * 358.45186 * 7 2 1 9 9 C 1.50697 * 120.00291 * 178.17686 * 7 2 1 10 10 H 1.08998 * 109.47133 * 24.70639 * 9 7 2 11 11 C 1.52999 * 109.47394 * 144.71405 * 9 7 2 12 12 C 1.50697 * 109.47231 * 185.31525 * 11 9 7 13 13 C 1.38237 * 119.99765 * 264.04386 * 12 11 9 14 14 C 1.38235 * 120.00095 * 179.76503 * 13 12 11 15 15 C 1.38234 * 119.99595 * 0.50797 * 14 13 12 16 16 C 1.38231 * 120.00308 * 359.74189 * 15 14 13 17 17 C 1.38235 * 120.00142 * 84.31221 * 12 11 9 18 18 C 1.53001 * 109.46881 * 264.71286 * 9 7 2 19 19 C 1.54265 * 110.03500 * 63.32709 * 18 9 7 20 20 C 1.54896 * 104.19718 * 217.10620 * 19 18 9 21 21 C 1.54891 * 102.74815 * 37.94039 * 20 19 18 22 22 C 1.53881 * 110.03339 * 306.15965 * 18 9 7 23 23 H 0.97001 * 120.00340 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46469 * 305.31355 * 11 9 7 25 25 H 1.08998 * 109.46977 * 65.31283 * 11 9 7 26 26 H 1.08004 * 119.99804 * 359.97438 * 13 12 11 27 27 H 1.07993 * 120.00203 * 180.22416 * 14 13 12 28 28 H 1.08002 * 119.99951 * 179.72090 * 15 14 13 29 29 H 1.08004 * 120.00536 * 179.97438 * 16 15 14 30 30 H 1.07998 * 119.99857 * 0.02562 * 17 12 11 31 31 H 1.09001 * 110.01552 * 184.76901 * 18 9 7 32 32 H 1.09003 * 110.48483 * 335.78208 * 19 18 9 33 33 H 1.08999 * 110.49029 * 98.42403 * 19 18 9 34 34 H 1.09000 * 110.75031 * 279.62766 * 20 19 18 35 35 H 1.08999 * 110.91162 * 156.32991 * 20 19 18 36 36 H 1.09000 * 110.48634 * 203.38187 * 21 20 19 37 37 H 1.08999 * 110.59641 * 80.79471 * 21 20 19 38 38 H 1.08997 * 110.02975 * 238.57380 * 22 18 9 39 39 H 1.08994 * 110.02622 * 0.02562 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4369 2.0809 -1.3984 5 1 1.4775 2.6348 0.7588 6 1 3.5752 1.4239 0.6396 7 6 2.0046 -1.1940 0.0005 8 1 1.4649 -2.1291 0.0262 9 6 3.5110 -1.1942 -0.0410 10 1 3.8858 -0.2538 0.3630 11 6 4.0442 -2.3580 0.7970 12 6 5.5478 -2.2821 0.8630 13 6 6.3163 -3.0207 -0.0172 14 6 7.6956 -2.9474 0.0401 15 6 8.3063 -2.1436 0.9844 16 6 7.5378 -1.4090 1.8679 17 6 6.1585 -1.4782 1.8073 18 6 3.9812 -1.3507 -1.4885 19 6 3.5209 -0.1408 -2.3275 20 6 3.1604 -0.7491 -3.7056 21 6 2.5042 -2.0987 -3.3223 22 6 3.3348 -2.5957 -2.1211 23 1 -0.4851 0.8400 -0.0004 24 1 3.6328 -2.2984 1.8047 25 1 3.7477 -3.3015 0.3387 26 1 5.8391 -3.6525 -0.7518 27 1 8.2959 -3.5217 -0.6499 28 1 9.3839 -2.0898 1.0321 29 1 8.0150 -0.7813 2.6060 30 1 5.5581 -0.9049 2.4980 31 1 5.0674 -1.4368 -1.5207 32 1 2.6455 0.3258 -1.8757 33 1 4.3299 0.5826 -2.4296 34 1 4.0578 -0.9116 -4.3026 35 1 2.4535 -0.1133 -4.2386 36 1 2.5712 -2.8043 -4.1505 37 1 1.4641 -1.9506 -3.0318 38 1 4.1072 -3.2855 -2.4610 39 1 2.6858 -3.0880 -1.3970 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261148200.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:40 Heat of formation + Delta-G solvation = 1.844018 kcal Electronic energy + Delta-G solvation = -18153.627133 eV Core-core repulsion = 15638.879049 eV Total energy + Delta-G solvation = -2514.748084 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.17396 -37.65121 -33.76665 -32.16652 -30.54633 -29.84569 -27.92447 -26.45832 -25.11669 -22.19333 -21.64951 -20.52028 -19.83272 -18.09658 -16.86768 -16.22012 -15.19478 -14.79542 -14.69173 -14.30425 -13.88976 -13.06182 -13.00434 -12.92775 -12.51391 -12.49115 -12.30888 -11.80201 -11.30351 -11.08613 -10.75094 -10.61785 -10.39507 -10.25952 -10.13641 -9.99597 -9.73786 -9.60388 -9.45919 -9.00066 -8.74552 -8.55892 -8.51619 -8.12368 -6.04336 -4.01969 1.74517 1.76936 3.27827 3.38386 3.39539 4.17379 4.41159 5.22003 5.23009 5.24762 5.36393 5.47459 5.53708 5.59437 5.65075 5.85947 5.91446 6.12424 6.19600 6.30764 6.34581 6.38787 6.42476 6.50236 6.54923 6.61574 6.68106 6.74150 6.80649 6.82662 6.84010 6.97696 7.07159 7.14234 7.25241 7.25843 7.38828 7.43954 7.57242 7.85378 8.55665 8.99988 9.58131 11.08255 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.021423 B = 0.009147 C = 0.007649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.680435 B = 3060.518628 C = 3659.500257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.071 3.929 3 Si 0.868 3.132 4 H -0.272 1.272 5 H -0.297 1.297 6 H -0.259 1.259 7 C -0.493 4.493 8 H 0.074 0.926 9 C 0.013 3.987 10 H 0.041 0.959 11 C -0.073 4.073 12 C -0.056 4.056 13 C -0.120 4.120 14 C -0.123 4.123 15 C -0.142 4.142 16 C -0.122 4.122 17 C -0.124 4.124 18 C -0.081 4.081 19 C -0.131 4.131 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.102 4.102 23 H 0.262 0.738 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.039 0.961 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.054 -3.461 -1.398 12.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.129 4.129 3 Si 0.697 3.303 4 H -0.199 1.199 5 H -0.225 1.225 6 H -0.184 1.184 7 C -0.531 4.531 8 H 0.092 0.908 9 C -0.005 4.005 10 H 0.059 0.941 11 C -0.110 4.110 12 C -0.056 4.056 13 C -0.138 4.138 14 C -0.141 4.141 15 C -0.160 4.160 16 C -0.140 4.140 17 C -0.142 4.142 18 C -0.100 4.100 19 C -0.168 4.168 20 C -0.156 4.156 21 C -0.153 4.153 22 C -0.139 4.139 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.137 0.863 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.137 0.863 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.880 -3.352 -1.392 12.422 hybrid contribution 0.449 1.055 -0.115 1.152 sum 12.329 -2.297 -1.507 12.631 Atomic orbital electron populations 1.69888 1.06128 1.26654 1.51421 1.25042 0.94595 0.98546 0.94753 0.87262 0.80571 0.84291 0.78167 1.19870 1.22493 1.18434 1.20901 0.88593 0.94213 1.49349 0.90768 1.19431 0.96566 0.94093 0.90459 0.94065 1.20841 0.87760 1.00980 1.01438 1.20387 0.97547 0.94125 0.93559 1.21102 0.93415 1.00106 0.99187 1.21065 0.94886 0.99443 0.98726 1.20968 0.99125 0.98833 0.97064 1.21067 0.94081 0.99610 0.99241 1.21119 0.94406 0.99362 0.99299 1.21903 0.96717 0.93748 0.97638 1.22722 1.01075 0.97716 0.95260 1.22384 0.98936 0.97184 0.97142 1.22248 1.00653 0.95540 0.96865 1.22023 0.97760 0.97162 0.97003 0.92832 0.91504 0.91824 0.86309 0.86838 0.86980 0.86809 0.86287 0.93788 0.89500 0.94199 0.93083 0.92929 0.93740 0.91027 0.94672 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.96 55.43 0.77 -25.91 16 2 C 0.07 1.96 4.89 -17.82 -0.09 1.87 16 3 Si 0.87 21.27 24.42 -169.99 -4.15 17.11 16 4 H -0.27 -6.51 6.44 56.52 0.36 -6.14 16 5 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.26 -6.13 5.88 56.52 0.33 -5.80 16 7 C -0.49 -12.84 7.23 -34.44 -0.25 -13.09 16 8 H 0.07 2.11 7.54 -52.49 -0.40 1.71 16 9 C 0.01 0.30 1.56 -91.77 -0.14 0.15 16 10 H 0.04 0.98 4.84 -51.93 -0.25 0.73 16 11 C -0.07 -1.41 4.68 -27.88 -0.13 -1.54 16 12 C -0.06 -0.98 4.56 -104.62 -0.48 -1.46 16 13 C -0.12 -1.89 8.31 -39.58 -0.33 -2.22 16 14 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 15 C -0.14 -1.92 10.05 -39.59 -0.40 -2.32 16 16 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 17 C -0.12 -2.05 9.73 -39.58 -0.38 -2.43 16 18 C -0.08 -1.65 2.51 -89.50 -0.22 -1.88 16 19 C -0.13 -2.76 5.11 -25.07 -0.13 -2.89 16 20 C -0.12 -2.20 6.91 -24.73 -0.17 -2.37 16 21 C -0.12 -2.16 6.83 -25.07 -0.17 -2.34 16 22 C -0.10 -1.95 5.39 -25.61 -0.14 -2.08 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 25 H 0.06 1.20 6.67 -51.93 -0.35 0.85 16 26 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 27 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 28 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 29 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 30 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 31 H 0.04 0.86 6.32 -51.93 -0.33 0.53 16 32 H 0.09 2.08 2.68 -51.93 -0.14 1.94 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 1.54 5.63 -51.93 -0.29 1.25 16 LS Contribution 294.89 15.07 4.44 4.44 Total: -1.00 -28.10 294.89 -8.83 -36.93 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.07 Total: 4.31 kcal Atomic # 6 Polarization: -33.06 SS G_CDS: -3.83 Total: -36.88 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: 0.77 Total: -25.91 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.15 Total: 17.11 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.10 -8.83 -36.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148200.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.770 kcal (2) G-P(sol) polarization free energy of solvation -28.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds