Wall clock time and date at job start Mon Mar 30 2020 07:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86809 * 119.99468 * 2 1 4 4 H 1.48497 * 109.46863 * 272.81545 * 3 2 1 5 5 H 1.48496 * 109.47042 * 32.81826 * 3 2 1 6 6 H 1.48503 * 109.46833 * 152.81788 * 3 2 1 7 7 C 1.37873 * 120.00528 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99304 * 358.45186 * 7 2 1 9 9 C 1.50697 * 120.00291 * 178.17686 * 7 2 1 10 10 H 1.08998 * 109.47133 * 24.70639 * 9 7 2 11 11 C 1.52999 * 109.47394 * 144.71405 * 9 7 2 12 12 C 1.50697 * 109.47231 * 185.31525 * 11 9 7 13 13 C 1.38237 * 119.99765 * 264.04386 * 12 11 9 14 14 C 1.38235 * 120.00095 * 179.76503 * 13 12 11 15 15 C 1.38234 * 119.99595 * 0.50797 * 14 13 12 16 16 C 1.38231 * 120.00308 * 359.74189 * 15 14 13 17 17 C 1.38235 * 120.00142 * 84.31221 * 12 11 9 18 18 C 1.53001 * 109.46881 * 264.71286 * 9 7 2 19 19 C 1.54265 * 110.03500 * 63.32709 * 18 9 7 20 20 C 1.54896 * 104.19718 * 217.10620 * 19 18 9 21 21 C 1.54891 * 102.74815 * 37.94039 * 20 19 18 22 22 C 1.53881 * 110.03339 * 306.15965 * 18 9 7 23 23 H 0.97001 * 120.00340 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46469 * 305.31355 * 11 9 7 25 25 H 1.08998 * 109.46977 * 65.31283 * 11 9 7 26 26 H 1.08004 * 119.99804 * 359.97438 * 13 12 11 27 27 H 1.07993 * 120.00203 * 180.22416 * 14 13 12 28 28 H 1.08002 * 119.99951 * 179.72090 * 15 14 13 29 29 H 1.08004 * 120.00536 * 179.97438 * 16 15 14 30 30 H 1.07998 * 119.99857 * 0.02562 * 17 12 11 31 31 H 1.09001 * 110.01552 * 184.76901 * 18 9 7 32 32 H 1.09003 * 110.48483 * 335.78208 * 19 18 9 33 33 H 1.08999 * 110.49029 * 98.42403 * 19 18 9 34 34 H 1.09000 * 110.75031 * 279.62766 * 20 19 18 35 35 H 1.08999 * 110.91162 * 156.32991 * 20 19 18 36 36 H 1.09000 * 110.48634 * 203.38187 * 21 20 19 37 37 H 1.08999 * 110.59641 * 80.79471 * 21 20 19 38 38 H 1.08997 * 110.02975 * 238.57380 * 22 18 9 39 39 H 1.08994 * 110.02622 * 0.02562 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4369 2.0809 -1.3984 5 1 1.4775 2.6348 0.7588 6 1 3.5752 1.4239 0.6396 7 6 2.0046 -1.1940 0.0005 8 1 1.4649 -2.1291 0.0262 9 6 3.5110 -1.1942 -0.0410 10 1 3.8858 -0.2538 0.3630 11 6 4.0442 -2.3580 0.7970 12 6 5.5478 -2.2821 0.8630 13 6 6.3163 -3.0207 -0.0172 14 6 7.6956 -2.9474 0.0401 15 6 8.3063 -2.1436 0.9844 16 6 7.5378 -1.4090 1.8679 17 6 6.1585 -1.4782 1.8073 18 6 3.9812 -1.3507 -1.4885 19 6 3.5209 -0.1408 -2.3275 20 6 3.1604 -0.7491 -3.7056 21 6 2.5042 -2.0987 -3.3223 22 6 3.3348 -2.5957 -2.1211 23 1 -0.4851 0.8400 -0.0004 24 1 3.6328 -2.2984 1.8047 25 1 3.7477 -3.3015 0.3387 26 1 5.8391 -3.6525 -0.7518 27 1 8.2959 -3.5217 -0.6499 28 1 9.3839 -2.0898 1.0321 29 1 8.0150 -0.7813 2.6060 30 1 5.5581 -0.9049 2.4980 31 1 5.0674 -1.4368 -1.5207 32 1 2.6455 0.3258 -1.8757 33 1 4.3299 0.5826 -2.4296 34 1 4.0578 -0.9116 -4.3026 35 1 2.4535 -0.1133 -4.2386 36 1 2.5712 -2.8043 -4.1505 37 1 1.4641 -1.9506 -3.0318 38 1 4.1072 -3.2855 -2.4610 39 1 2.6858 -3.0880 -1.3970 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261148200.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:39 Heat of formation + Delta-G solvation = -11.767353 kcal Electronic energy + Delta-G solvation = -18154.217366 eV Core-core repulsion = 15638.879049 eV Total energy + Delta-G solvation = -2515.338317 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.51154 -39.11402 -35.38979 -34.06779 -31.67740 -31.35017 -29.49477 -28.03539 -26.89786 -23.38161 -23.19081 -21.93948 -21.35047 -19.83676 -18.79353 -17.40320 -16.78492 -16.34228 -16.02384 -15.82188 -15.47228 -14.79448 -14.46423 -14.21604 -14.19473 -14.05189 -13.81497 -13.20967 -12.87913 -12.72449 -12.25145 -12.05632 -11.93390 -11.81843 -11.72607 -11.61453 -11.47793 -11.22267 -11.12058 -10.80843 -10.59788 -10.53054 -9.69523 -9.39406 -8.20371 -6.19615 0.59989 0.61045 1.31035 1.35259 1.42270 2.35636 3.00643 3.16184 3.91095 4.02260 4.06217 4.11127 4.14457 4.27746 4.38855 4.52890 4.67992 4.74330 4.76852 4.77785 4.89342 4.93693 4.96460 5.01302 5.07561 5.13964 5.23922 5.24274 5.31969 5.37280 5.45986 5.53344 5.65071 5.66274 5.70510 5.71494 5.77521 5.93767 6.01181 6.26129 6.43153 6.85867 7.43471 8.95756 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.021423 B = 0.009147 C = 0.007649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.680435 B = 3060.518628 C = 3659.500257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.019 3.981 3 Si 0.920 3.080 4 H -0.261 1.261 5 H -0.305 1.305 6 H -0.245 1.245 7 C -0.477 4.477 8 H 0.037 0.963 9 C 0.015 3.985 10 H 0.028 0.972 11 C -0.064 4.064 12 C -0.078 4.078 13 C -0.128 4.128 14 C -0.121 4.121 15 C -0.136 4.136 16 C -0.124 4.124 17 C -0.145 4.145 18 C -0.075 4.075 19 C -0.144 4.144 20 C -0.113 4.113 21 C -0.115 4.115 22 C -0.099 4.099 23 H 0.260 0.740 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.125 0.875 27 H 0.144 0.856 28 H 0.146 0.854 29 H 0.138 0.862 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.034 0.966 38 H 0.067 0.933 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.975 -3.722 -2.642 16.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.176 4.176 3 Si 0.748 3.252 4 H -0.187 1.187 5 H -0.233 1.233 6 H -0.170 1.170 7 C -0.516 4.516 8 H 0.055 0.945 9 C -0.003 4.003 10 H 0.046 0.954 11 C -0.102 4.102 12 C -0.078 4.078 13 C -0.146 4.146 14 C -0.139 4.139 15 C -0.153 4.153 16 C -0.142 4.142 17 C -0.163 4.163 18 C -0.094 4.094 19 C -0.181 4.181 20 C -0.150 4.150 21 C -0.153 4.153 22 C -0.137 4.137 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.143 0.857 27 H 0.162 0.838 28 H 0.164 0.836 29 H 0.156 0.844 30 H 0.128 0.872 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.827 -3.624 -2.638 16.450 hybrid contribution -0.722 1.029 0.311 1.295 sum 15.105 -2.596 -2.327 15.502 Atomic orbital electron populations 1.70036 1.07888 1.27221 1.54249 1.25704 0.95073 1.01810 0.95036 0.86402 0.79799 0.80384 0.78636 1.18658 1.23338 1.16965 1.21085 0.90875 0.92420 1.47178 0.94516 1.19357 0.93609 0.94696 0.92682 0.95368 1.20596 0.90077 0.99685 0.99831 1.20164 0.95852 0.96279 0.95512 1.21226 0.94437 0.99956 0.98964 1.21433 0.94211 0.99190 0.99030 1.21411 1.00852 0.97299 0.95775 1.21367 0.93094 0.99814 0.99899 1.21219 0.95775 0.99822 0.99472 1.21809 0.97678 0.94192 0.95736 1.22787 1.00187 0.98269 0.96842 1.22385 1.00213 0.96386 0.96024 1.22220 0.98444 0.96866 0.97765 1.21985 0.98133 0.97030 0.96524 0.93137 0.93231 0.91838 0.85687 0.83783 0.83637 0.84449 0.87173 0.91969 0.92722 0.92874 0.89893 0.92829 0.90570 0.94729 0.91474 0.93298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.20 13.96 21.45 0.30 -58.90 16 2 C 0.02 1.11 4.89 84.65 0.41 1.53 16 3 Si 0.92 44.91 24.42 68.60 1.68 46.59 16 4 H -0.26 -12.16 6.44 99.48 0.64 -11.52 16 5 H -0.31 -15.14 7.11 99.48 0.71 -14.43 16 6 H -0.25 -11.29 5.88 99.48 0.58 -10.70 16 7 C -0.48 -26.02 7.23 25.60 0.18 -25.83 16 8 H 0.04 2.23 7.54 -2.91 -0.02 2.21 16 9 C 0.02 0.69 1.56 -11.54 -0.02 0.67 16 10 H 0.03 1.34 4.84 -2.39 -0.01 1.33 16 11 C -0.06 -2.54 4.68 29.85 0.14 -2.40 16 12 C -0.08 -2.63 4.56 -19.87 -0.09 -2.72 16 13 C -0.13 -3.67 8.31 22.27 0.19 -3.48 16 14 C -0.12 -2.84 10.05 22.27 0.22 -2.62 16 15 C -0.14 -3.04 10.05 22.27 0.22 -2.82 16 16 C -0.12 -3.17 10.05 22.27 0.22 -2.95 16 17 C -0.14 -4.61 9.73 22.27 0.22 -4.39 16 18 C -0.08 -2.97 2.51 -10.07 -0.03 -2.99 16 19 C -0.14 -5.85 5.11 31.67 0.16 -5.68 16 20 C -0.11 -3.90 6.91 31.89 0.22 -3.68 16 21 C -0.12 -4.18 6.83 31.67 0.22 -3.96 16 22 C -0.10 -3.66 5.39 31.32 0.17 -3.49 16 23 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 24 H 0.05 2.05 8.12 -2.38 -0.02 2.03 16 25 H 0.06 2.44 6.67 -2.39 -0.02 2.43 16 26 H 0.13 3.35 8.06 -2.91 -0.02 3.32 16 27 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 28 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 29 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 30 H 0.11 3.57 8.06 -2.91 -0.02 3.54 16 31 H 0.06 2.25 6.32 -2.39 -0.02 2.23 16 32 H 0.05 2.60 2.68 -2.39 -0.01 2.59 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.05 2.05 5.63 -2.39 -0.01 2.03 16 Total: -1.00 -63.31 294.89 5.24 -58.07 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.82 Total: 19.06 kcal Atomic # 6 Polarization: -67.27 SS G_CDS: 2.45 Total: -64.82 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 0.30 Total: -58.90 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.68 Total: 46.59 kcal Total: -63.31 5.24 -58.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148200.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.304 kcal (2) G-P(sol) polarization free energy of solvation -63.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds