Wall clock time and date at job start Mon Mar 30 2020 07:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99884 * 2 1 4 4 H 1.48501 * 109.47142 * 267.53079 * 3 2 1 5 5 H 1.48503 * 109.47071 * 27.52831 * 3 2 1 6 6 H 1.48499 * 109.47090 * 147.52916 * 3 2 1 7 7 C 1.37866 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00310 * 28.09969 * 7 2 1 9 9 C 1.50702 * 119.99913 * 208.10629 * 7 2 1 10 10 H 1.08997 * 109.47186 * 322.35056 * 9 7 2 11 11 C 1.53000 * 109.47037 * 202.35489 * 9 7 2 12 12 C 1.50698 * 109.47228 * 166.17330 * 11 9 7 13 13 C 1.38234 * 120.00084 * 122.40714 * 12 11 9 14 14 C 1.38244 * 119.99678 * 180.27813 * 13 12 11 15 15 C 1.38235 * 120.00135 * 359.48725 * 14 13 12 16 16 C 1.38234 * 119.99988 * 0.51277 * 15 14 13 17 17 C 1.38238 * 119.99846 * 359.74362 * 16 15 14 18 18 C 1.52997 * 109.47559 * 82.35281 * 9 7 2 19 19 C 1.54259 * 110.03552 * 181.76914 * 18 9 7 20 20 C 1.54970 * 104.16386 * 217.13636 * 19 18 9 21 21 C 1.54891 * 102.77230 * 37.88780 * 20 19 18 22 22 C 1.53879 * 110.03247 * 64.55042 * 18 9 7 23 23 H 0.97005 * 119.99981 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47157 * 46.17247 * 11 9 7 25 25 H 1.09004 * 109.47250 * 286.17313 * 11 9 7 26 26 H 1.07995 * 120.00260 * 0.02562 * 13 12 11 27 27 H 1.08002 * 119.99975 * 179.72658 * 14 13 12 28 28 H 1.07999 * 119.99823 * 180.23252 * 15 14 13 29 29 H 1.08001 * 120.00278 * 179.72403 * 16 15 14 30 30 H 1.08000 * 120.00291 * 179.97438 * 17 16 15 31 31 H 1.08999 * 110.01896 * 303.16234 * 18 9 7 32 32 H 1.09008 * 110.48509 * 335.78369 * 19 18 9 33 33 H 1.09001 * 110.49008 * 98.42575 * 19 18 9 34 34 H 1.08997 * 110.71581 * 279.57601 * 20 19 18 35 35 H 1.08993 * 110.92216 * 156.29418 * 20 19 18 36 36 H 1.09000 * 110.48473 * 203.40666 * 21 20 19 37 37 H 1.08995 * 110.60229 * 80.82286 * 21 20 19 38 38 H 1.09000 * 110.03377 * 238.57284 * 22 18 9 39 39 H 1.09003 * 110.02983 * 359.95107 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5489 2.0163 -1.3988 5 1 1.4214 2.6672 0.6471 6 1 3.5196 1.4559 0.7517 7 6 2.0045 -1.1939 -0.0005 8 1 1.5601 -2.0740 -0.4414 9 6 3.3783 -1.2711 0.6143 10 1 3.9240 -0.3521 0.4009 11 6 4.1352 -2.4624 0.0236 12 6 5.5978 -2.3493 0.3685 13 6 6.2251 -3.3673 1.0620 14 6 7.5655 -3.2609 1.3833 15 6 8.2810 -2.1413 1.0019 16 6 7.6536 -1.1233 0.3084 17 6 6.3120 -1.2273 -0.0083 18 6 3.2502 -1.4483 2.1286 19 6 4.6496 -1.4844 2.7767 20 6 4.5151 -2.5316 3.9111 21 6 3.5992 -3.6077 3.2769 22 6 2.5822 -2.7975 2.4468 23 1 -0.4850 0.8401 0.0004 24 1 4.0166 -2.4671 -1.0599 25 1 3.7350 -3.3883 0.4369 26 1 5.6672 -4.2439 1.3563 27 1 8.0546 -4.0543 1.9290 28 1 9.3290 -2.0599 1.2497 29 1 8.2115 -0.2465 0.0143 30 1 5.8217 -0.4318 -0.5497 31 1 2.6638 -0.6325 2.5514 32 1 5.3981 -1.8025 2.0508 33 1 4.9055 -0.5075 3.1867 34 1 4.0427 -2.0907 4.7888 35 1 5.4865 -2.9539 4.1681 36 1 3.0893 -4.1796 4.0522 37 1 4.1760 -4.2708 2.6322 38 1 1.6722 -2.6366 3.0247 39 1 2.3486 -3.3257 1.5223 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261148201.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:44 Heat of formation + Delta-G solvation = 12.819617 kcal Electronic energy + Delta-G solvation = -18437.813933 eV Core-core repulsion = 15923.541787 eV Total energy + Delta-G solvation = -2514.272146 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.83059 -37.35840 -33.72123 -32.17491 -30.61671 -29.98462 -27.95212 -26.39128 -25.20899 -22.32049 -21.57886 -20.41302 -19.86785 -18.13190 -16.67197 -16.19706 -15.63631 -14.79142 -14.64234 -14.29529 -14.02806 -13.17750 -13.12438 -12.97826 -12.61896 -12.40179 -11.87595 -11.60959 -11.34590 -10.90692 -10.81982 -10.61723 -10.52184 -10.39012 -10.31650 -10.23957 -9.98779 -9.75604 -9.37626 -9.16183 -9.06198 -8.57285 -8.14860 -7.77521 -6.14705 -3.97238 1.73937 1.75735 3.30716 3.40666 3.43420 4.15797 4.46820 5.12717 5.19082 5.23479 5.34118 5.40363 5.46400 5.49784 5.55471 5.84091 5.89659 6.09938 6.19842 6.22799 6.27873 6.32761 6.36866 6.40575 6.48518 6.57599 6.62132 6.62864 6.80631 6.82019 6.83905 6.86580 7.02257 7.09201 7.16343 7.36970 7.43556 7.51725 7.58384 7.88228 8.53517 9.01347 9.58991 10.98279 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.022259 B = 0.009680 C = 0.007861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.640299 B = 2891.802937 C = 3560.945449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.084 3.916 3 Si 0.850 3.150 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.260 1.260 7 C -0.524 4.524 8 H 0.070 0.930 9 C 0.029 3.971 10 H 0.034 0.966 11 C -0.080 4.080 12 C -0.038 4.038 13 C -0.128 4.128 14 C -0.121 4.121 15 C -0.145 4.145 16 C -0.117 4.117 17 C -0.130 4.130 18 C -0.076 4.076 19 C -0.161 4.161 20 C -0.119 4.119 21 C -0.126 4.126 22 C -0.103 4.103 23 H 0.262 0.738 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.119 0.881 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.053 0.947 32 H 0.100 0.900 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.900 -4.893 3.835 14.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.119 4.119 3 Si 0.676 3.324 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.184 1.184 7 C -0.560 4.560 8 H 0.089 0.911 9 C 0.010 3.990 10 H 0.052 0.948 11 C -0.117 4.117 12 C -0.038 4.038 13 C -0.146 4.146 14 C -0.139 4.139 15 C -0.163 4.163 16 C -0.135 4.135 17 C -0.148 4.148 18 C -0.096 4.096 19 C -0.197 4.197 20 C -0.156 4.156 21 C -0.163 4.163 22 C -0.140 4.140 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.137 0.863 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.140 0.860 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.698 -4.783 3.834 14.100 hybrid contribution 0.295 1.125 0.146 1.172 sum 12.993 -3.658 3.979 14.073 Atomic orbital electron populations 1.70152 1.06681 1.27057 1.47402 1.24911 0.94110 0.98841 0.94066 0.87184 0.81660 0.84901 0.78667 1.20341 1.21685 1.18410 1.20819 0.99063 0.96914 1.39223 0.91144 1.19204 0.95592 0.93119 0.91100 0.94798 1.20959 0.88332 1.01462 1.00954 1.20173 0.97230 0.92931 0.93500 1.21098 0.94585 0.99094 0.99788 1.21027 0.94535 0.97928 1.00374 1.20947 0.99409 0.94925 1.01010 1.21074 0.94954 0.98504 0.98993 1.21120 0.94009 0.98274 1.01381 1.21935 0.93004 0.96583 0.98029 1.23376 1.00710 0.97404 0.98229 1.22398 0.98233 0.97025 0.97982 1.22444 0.97774 0.97454 0.98626 1.22025 0.96721 0.96078 0.99219 0.92826 0.91108 0.91373 0.86308 0.86865 0.87000 0.86789 0.86045 0.92805 0.88216 0.93981 0.92822 0.93115 0.93190 0.92424 0.93265 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.04 13.96 55.43 0.77 -25.26 16 2 C 0.08 2.35 5.45 -17.82 -0.10 2.26 16 3 Si 0.85 20.88 27.77 -169.99 -4.72 16.16 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.26 -6.16 6.20 56.52 0.35 -5.81 16 7 C -0.52 -13.94 7.79 -34.44 -0.27 -14.21 16 8 H 0.07 2.03 8.04 -52.49 -0.42 1.61 16 9 C 0.03 0.64 1.50 -91.77 -0.14 0.51 16 10 H 0.03 0.79 4.05 -51.93 -0.21 0.58 16 11 C -0.08 -1.54 4.74 -27.88 -0.13 -1.67 16 12 C -0.04 -0.65 3.03 -104.62 -0.32 -0.97 16 13 C -0.13 -1.91 7.96 -39.58 -0.32 -2.23 16 14 C -0.12 -1.62 10.05 -39.58 -0.40 -2.01 16 15 C -0.14 -1.92 10.05 -39.58 -0.40 -2.31 16 16 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 17 C -0.13 -2.16 8.58 -39.58 -0.34 -2.50 16 18 C -0.08 -1.62 2.75 -89.50 -0.25 -1.86 16 19 C -0.16 -2.95 5.99 -25.03 -0.15 -3.10 16 20 C -0.12 -1.90 6.91 -24.69 -0.17 -2.07 16 21 C -0.13 -2.01 6.81 -25.07 -0.17 -2.18 16 22 C -0.10 -2.01 5.35 -25.61 -0.14 -2.15 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.07 1.38 8.06 -51.93 -0.42 0.97 16 25 H 0.07 1.27 5.58 -51.93 -0.29 0.98 16 26 H 0.12 1.66 6.37 -52.49 -0.33 1.32 16 27 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 28 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.12 2.08 7.41 -52.49 -0.39 1.69 16 31 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.10 1.76 1.89 -54.11 -0.10 1.66 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.86 6.40 -51.93 -0.33 0.53 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 1.47 5.72 -51.93 -0.30 1.18 16 LS Contribution 294.00 15.07 4.43 4.43 Total: -1.00 -28.33 294.00 -8.98 -37.31 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.79 Total: 3.95 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: -3.67 Total: -36.58 kcal Atomic # 7 Polarization: -26.04 SS G_CDS: 0.77 Total: -25.26 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.72 Total: 16.16 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.33 -8.98 -37.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148201.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.132 kcal (2) G-P(sol) polarization free energy of solvation -28.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds