Wall clock time and date at job start Mon Mar 30 2020 07:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99884 * 2 1 4 4 H 1.48501 * 109.47142 * 267.53079 * 3 2 1 5 5 H 1.48503 * 109.47071 * 27.52831 * 3 2 1 6 6 H 1.48499 * 109.47090 * 147.52916 * 3 2 1 7 7 C 1.37866 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00310 * 28.09969 * 7 2 1 9 9 C 1.50702 * 119.99913 * 208.10629 * 7 2 1 10 10 H 1.08997 * 109.47186 * 322.35056 * 9 7 2 11 11 C 1.53000 * 109.47037 * 202.35489 * 9 7 2 12 12 C 1.50698 * 109.47228 * 166.17330 * 11 9 7 13 13 C 1.38234 * 120.00084 * 122.40714 * 12 11 9 14 14 C 1.38244 * 119.99678 * 180.27813 * 13 12 11 15 15 C 1.38235 * 120.00135 * 359.48725 * 14 13 12 16 16 C 1.38234 * 119.99988 * 0.51277 * 15 14 13 17 17 C 1.38238 * 119.99846 * 359.74362 * 16 15 14 18 18 C 1.52997 * 109.47559 * 82.35281 * 9 7 2 19 19 C 1.54259 * 110.03552 * 181.76914 * 18 9 7 20 20 C 1.54970 * 104.16386 * 217.13636 * 19 18 9 21 21 C 1.54891 * 102.77230 * 37.88780 * 20 19 18 22 22 C 1.53879 * 110.03247 * 64.55042 * 18 9 7 23 23 H 0.97005 * 119.99981 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47157 * 46.17247 * 11 9 7 25 25 H 1.09004 * 109.47250 * 286.17313 * 11 9 7 26 26 H 1.07995 * 120.00260 * 0.02562 * 13 12 11 27 27 H 1.08002 * 119.99975 * 179.72658 * 14 13 12 28 28 H 1.07999 * 119.99823 * 180.23252 * 15 14 13 29 29 H 1.08001 * 120.00278 * 179.72403 * 16 15 14 30 30 H 1.08000 * 120.00291 * 179.97438 * 17 16 15 31 31 H 1.08999 * 110.01896 * 303.16234 * 18 9 7 32 32 H 1.09008 * 110.48509 * 335.78369 * 19 18 9 33 33 H 1.09001 * 110.49008 * 98.42575 * 19 18 9 34 34 H 1.08997 * 110.71581 * 279.57601 * 20 19 18 35 35 H 1.08993 * 110.92216 * 156.29418 * 20 19 18 36 36 H 1.09000 * 110.48473 * 203.40666 * 21 20 19 37 37 H 1.08995 * 110.60229 * 80.82286 * 21 20 19 38 38 H 1.09000 * 110.03377 * 238.57284 * 22 18 9 39 39 H 1.09003 * 110.02983 * 359.95107 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5489 2.0163 -1.3988 5 1 1.4214 2.6672 0.6471 6 1 3.5196 1.4559 0.7517 7 6 2.0045 -1.1939 -0.0005 8 1 1.5601 -2.0740 -0.4414 9 6 3.3783 -1.2711 0.6143 10 1 3.9240 -0.3521 0.4009 11 6 4.1352 -2.4624 0.0236 12 6 5.5978 -2.3493 0.3685 13 6 6.2251 -3.3673 1.0620 14 6 7.5655 -3.2609 1.3833 15 6 8.2810 -2.1413 1.0019 16 6 7.6536 -1.1233 0.3084 17 6 6.3120 -1.2273 -0.0083 18 6 3.2502 -1.4483 2.1286 19 6 4.6496 -1.4844 2.7767 20 6 4.5151 -2.5316 3.9111 21 6 3.5992 -3.6077 3.2769 22 6 2.5822 -2.7975 2.4468 23 1 -0.4850 0.8401 0.0004 24 1 4.0166 -2.4671 -1.0599 25 1 3.7350 -3.3883 0.4369 26 1 5.6672 -4.2439 1.3563 27 1 8.0546 -4.0543 1.9290 28 1 9.3290 -2.0599 1.2497 29 1 8.2115 -0.2465 0.0143 30 1 5.8217 -0.4318 -0.5497 31 1 2.6638 -0.6325 2.5514 32 1 5.3981 -1.8025 2.0508 33 1 4.9055 -0.5075 3.1867 34 1 4.0427 -2.0907 4.7888 35 1 5.4865 -2.9539 4.1681 36 1 3.0893 -4.1796 4.0522 37 1 4.1760 -4.2708 2.6322 38 1 1.6722 -2.6366 3.0247 39 1 2.3486 -3.3257 1.5223 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261148201.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:44 Heat of formation + Delta-G solvation = -0.571984 kcal Electronic energy + Delta-G solvation = -18438.394637 eV Core-core repulsion = 15923.541787 eV Total energy + Delta-G solvation = -2514.852850 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.16516 -38.72499 -35.42379 -33.97168 -31.83081 -31.39981 -29.42193 -27.94717 -26.95077 -23.58833 -23.01577 -21.80946 -21.23050 -19.86640 -18.56836 -17.42858 -17.18944 -16.33344 -15.96035 -15.83813 -15.38700 -14.86989 -14.47581 -14.28533 -14.10641 -14.07691 -13.26793 -13.12571 -13.11923 -12.58940 -12.32273 -12.20284 -12.03496 -11.80348 -11.75745 -11.61403 -11.59349 -11.27387 -11.05571 -10.95376 -10.83451 -10.27083 -9.67567 -9.06201 -8.34085 -6.17985 0.61301 0.62970 1.30368 1.34692 1.43102 2.36746 2.98645 3.02687 3.91921 4.01619 4.08778 4.11100 4.16424 4.29081 4.40528 4.54867 4.67252 4.75806 4.76960 4.80199 4.92535 4.94322 4.99178 4.99942 5.09268 5.16075 5.25241 5.26313 5.35779 5.36452 5.46888 5.58923 5.67736 5.68951 5.75051 5.75891 5.83548 5.88119 6.01913 6.26446 6.39819 6.83179 7.39609 8.82632 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.022259 B = 0.009680 C = 0.007861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.640299 B = 2891.802937 C = 3560.945449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.029 3.971 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.247 1.247 7 C -0.520 4.520 8 H 0.034 0.966 9 C 0.031 3.969 10 H 0.026 0.974 11 C -0.071 4.071 12 C -0.059 4.059 13 C -0.130 4.130 14 C -0.115 4.115 15 C -0.136 4.136 16 C -0.121 4.121 17 C -0.151 4.151 18 C -0.079 4.079 19 C -0.159 4.159 20 C -0.111 4.111 21 C -0.115 4.115 22 C -0.104 4.104 23 H 0.263 0.737 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.130 0.870 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.134 0.866 30 H 0.104 0.896 31 H 0.018 0.982 32 H 0.114 0.886 33 H 0.035 0.965 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.031 0.969 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.758 -5.748 5.351 18.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.170 4.170 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.171 1.171 7 C -0.557 4.557 8 H 0.053 0.947 9 C 0.012 3.988 10 H 0.044 0.956 11 C -0.108 4.108 12 C -0.059 4.059 13 C -0.147 4.147 14 C -0.133 4.133 15 C -0.154 4.154 16 C -0.139 4.139 17 C -0.169 4.169 18 C -0.098 4.098 19 C -0.195 4.195 20 C -0.149 4.149 21 C -0.152 4.152 22 C -0.141 4.141 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.147 0.853 27 H 0.165 0.835 28 H 0.163 0.837 29 H 0.152 0.848 30 H 0.122 0.878 31 H 0.037 0.963 32 H 0.131 0.869 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.578 -5.641 5.347 18.309 hybrid contribution -0.896 1.321 -0.368 1.638 sum 15.681 -4.319 4.979 17.010 Atomic orbital electron populations 1.70260 1.08303 1.27828 1.50042 1.25661 0.94735 1.02288 0.94331 0.86227 0.80644 0.80609 0.79087 1.19461 1.21787 1.17086 1.21121 1.00975 0.95461 1.38168 0.94747 1.19126 0.93213 0.94399 0.92042 0.95634 1.20697 0.90445 0.99870 0.99765 1.19897 0.95564 0.94515 0.95903 1.21227 0.95641 0.98612 0.99258 1.21410 0.93633 0.98717 0.99541 1.21379 1.00938 0.93947 0.99149 1.21332 0.93943 0.99825 0.98765 1.21138 0.95397 0.98035 1.02336 1.21835 0.94965 0.96173 0.96867 1.23373 0.98617 0.98217 0.99338 1.22377 0.99621 0.95977 0.96907 1.22388 0.96840 0.97312 0.98694 1.21979 0.97274 0.95920 0.98953 0.92829 0.92720 0.91110 0.85251 0.83537 0.83708 0.84799 0.87803 0.96345 0.86885 0.94576 0.92641 0.90250 0.91255 0.90728 0.95035 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.74 13.96 21.44 0.30 -57.44 16 2 C 0.03 1.69 5.45 84.65 0.46 2.15 16 3 Si 0.91 44.60 27.77 68.60 1.91 46.50 16 4 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 6 H -0.25 -11.50 6.20 99.48 0.62 -10.88 16 7 C -0.52 -29.24 7.79 25.60 0.20 -29.04 16 8 H 0.03 2.12 8.04 -2.91 -0.02 2.10 16 9 C 0.03 1.43 1.50 -11.54 -0.02 1.41 16 10 H 0.03 1.22 4.05 -2.39 -0.01 1.21 16 11 C -0.07 -2.76 4.74 29.85 0.14 -2.62 16 12 C -0.06 -1.91 3.03 -19.87 -0.06 -1.97 16 13 C -0.13 -3.43 7.96 22.27 0.18 -3.25 16 14 C -0.12 -2.48 10.05 22.27 0.22 -2.26 16 15 C -0.14 -2.91 10.05 22.27 0.22 -2.69 16 16 C -0.12 -3.06 10.05 22.27 0.22 -2.84 16 17 C -0.15 -4.81 8.58 22.27 0.19 -4.62 16 18 C -0.08 -3.41 2.75 -10.07 -0.03 -3.44 16 19 C -0.16 -5.57 5.99 31.69 0.19 -5.38 16 20 C -0.11 -3.20 6.91 31.91 0.22 -2.97 16 21 C -0.12 -3.39 6.81 31.67 0.22 -3.17 16 22 C -0.10 -4.11 5.35 31.32 0.17 -3.94 16 23 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 24 H 0.05 2.24 8.06 -2.39 -0.02 2.22 16 25 H 0.07 2.67 5.58 -2.39 -0.01 2.65 16 26 H 0.13 3.11 6.37 -2.91 -0.02 3.09 16 27 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 28 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 30 H 0.10 3.58 7.41 -2.91 -0.02 3.56 16 31 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.11 3.73 1.89 -4.44 -0.01 3.72 16 33 H 0.04 1.28 8.14 -2.39 -0.02 1.27 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 1.96 6.40 -2.39 -0.02 1.95 16 38 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.05 2.30 5.72 -2.39 -0.01 2.29 16 Total: -1.00 -64.46 294.00 5.67 -58.80 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.93 Total: 16.76 kcal Atomic # 6 Polarization: -67.16 SS G_CDS: 2.53 Total: -64.63 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.30 Total: -57.44 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.91 Total: 46.50 kcal Total: -64.46 5.67 -58.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148201.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.226 kcal (2) G-P(sol) polarization free energy of solvation -64.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds