Wall clock time and date at job start Mon Mar 30 2020 07:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00117 * 2 1 4 4 H 1.48499 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46996 * 299.99653 * 3 2 1 6 6 H 1.48502 * 109.47233 * 59.99684 * 3 2 1 7 7 C 1.37874 * 119.99462 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99629 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00681 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47348 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.47303 * 54.99615 * 10 9 7 12 12 C 1.53002 * 109.46817 * 294.99872 * 10 9 7 13 13 C 1.52997 * 109.47415 * 300.00127 * 12 10 9 14 14 C 1.53006 * 109.47164 * 300.00027 * 13 12 10 15 15 C 1.52999 * 109.46626 * 59.99702 * 14 13 12 16 16 H 1.09000 * 109.47160 * 60.00369 * 15 14 13 17 17 C 1.50706 * 109.46957 * 180.02562 * 15 14 13 18 18 C 1.38232 * 119.99876 * 59.72409 * 17 15 14 19 19 C 1.38241 * 119.99890 * 179.78965 * 18 17 15 20 20 C 1.38236 * 119.99767 * 0.44170 * 19 18 17 21 21 C 1.38237 * 120.00103 * 359.81774 * 20 19 18 22 22 C 1.38235 * 119.99936 * 359.97210 * 21 20 19 23 23 C 1.52996 * 109.47131 * 175.00237 * 10 9 7 24 24 H 0.96996 * 120.00054 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46705 * 59.99768 * 9 7 2 26 26 H 1.09002 * 109.46894 * 299.99922 * 9 7 2 27 27 H 1.09000 * 109.46986 * 180.02562 * 12 10 9 28 28 H 1.09001 * 109.47601 * 60.00732 * 12 10 9 29 29 H 1.09001 * 109.46922 * 180.02562 * 13 12 10 30 30 H 1.09000 * 109.47140 * 59.99976 * 13 12 10 31 31 H 1.08993 * 109.46955 * 180.02562 * 14 13 12 32 32 H 1.09000 * 109.47050 * 300.00004 * 14 13 12 33 33 H 1.07999 * 120.00050 * 0.02562 * 18 17 15 34 34 H 1.07999 * 119.99940 * 180.28301 * 19 18 17 35 35 H 1.08001 * 119.99881 * 179.83329 * 20 19 18 36 36 H 1.07995 * 119.99584 * 179.97438 * 21 20 19 37 37 H 1.08001 * 119.99724 * 180.02562 * 22 21 20 38 38 H 1.09000 * 109.47054 * 179.97438 * 23 10 9 39 39 H 1.09001 * 109.46997 * 299.99574 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9293 -3.5553 0.8422 12 6 3.0399 -3.6536 -1.3069 13 6 2.0796 -3.8035 -2.4885 14 6 1.3187 -5.1250 -2.3628 15 6 0.5241 -5.1335 -1.0554 16 1 -0.1843 -4.3050 -1.0554 17 6 -0.2249 -6.4354 -0.9313 18 6 0.4670 -7.6319 -0.9148 19 6 -0.2197 -8.8259 -0.7965 20 6 -1.5990 -8.8237 -0.7039 21 6 -2.2913 -7.6273 -0.7258 22 6 -1.6042 -6.4332 -0.8397 23 6 1.4843 -4.9835 0.1262 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 3.7479 -4.4823 -1.3071 28 1 3.5820 -2.7122 -1.3965 29 1 2.6459 -3.7979 -3.4198 30 1 1.3713 -2.9751 -2.4884 31 1 0.6350 -5.2321 -3.2048 32 1 2.0270 -5.9535 -2.3628 33 1 1.5443 -7.6338 -0.9905 34 1 0.3212 -9.7605 -0.7790 35 1 -2.1356 -9.7566 -0.6142 36 1 -3.3688 -7.6257 -0.6539 37 1 -2.1451 -5.4985 -0.8564 38 1 2.1926 -5.8121 0.1257 39 1 0.9181 -4.9896 1.0576 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261148505.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:18 Heat of formation + Delta-G solvation = -14.172388 kcal Electronic energy + Delta-G solvation = -17582.562703 eV Core-core repulsion = 15067.120095 eV Total energy + Delta-G solvation = -2515.442607 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.66058 -37.76545 -33.32487 -32.05535 -30.75910 -30.64542 -28.40676 -26.82122 -23.27340 -22.90012 -22.28532 -21.42983 -20.24755 -17.63854 -16.77046 -16.15134 -15.22814 -14.96095 -14.47513 -14.18120 -13.75672 -13.46127 -13.09798 -13.05870 -12.78131 -12.30970 -11.99068 -11.76690 -11.56426 -11.14033 -10.99254 -10.94618 -10.89800 -10.59331 -10.42418 -10.19891 -9.86330 -9.58780 -9.32619 -8.92568 -8.78751 -8.76043 -8.41877 -8.27032 -5.95280 -3.95668 1.54370 1.55550 3.32760 3.40754 3.44380 3.95953 4.49773 4.94975 5.01629 5.10920 5.26533 5.37541 5.40516 5.43925 5.63645 5.69221 5.75962 5.93898 6.00821 6.14319 6.16899 6.20225 6.21331 6.22460 6.26340 6.47521 6.60441 6.60647 6.64755 6.70327 6.86197 6.96839 6.99000 7.04639 7.15029 7.19924 7.35495 7.76795 7.91755 8.06975 8.50805 9.11174 9.67532 11.16076 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.036707 B = 0.005398 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.622090 B = 5186.259207 C = 5572.167192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.085 4.085 11 H 0.055 0.945 12 C -0.101 4.101 13 C -0.120 4.120 14 C -0.102 4.102 15 C -0.053 4.053 16 H 0.089 0.911 17 C -0.061 4.061 18 C -0.117 4.117 19 C -0.123 4.123 20 C -0.135 4.135 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.099 4.099 24 H 0.258 0.742 25 H 0.026 0.974 26 H 0.011 0.989 27 H 0.036 0.964 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.047 0.953 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.624 -14.968 -3.141 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.550 4.550 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.104 4.104 11 H 0.073 0.927 12 C -0.138 4.138 13 C -0.157 4.157 14 C -0.139 4.139 15 C -0.071 4.071 16 H 0.107 0.893 17 C -0.061 4.061 18 C -0.135 4.135 19 C -0.141 4.141 20 C -0.154 4.154 21 C -0.139 4.139 22 C -0.136 4.136 23 C -0.137 4.137 24 H 0.068 0.932 25 H 0.044 0.956 26 H 0.030 0.970 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.141 0.859 38 H 0.066 0.934 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.764 -14.850 -3.141 15.198 hybrid contribution 0.350 0.949 0.069 1.014 sum -0.414 -13.901 -3.073 14.242 Atomic orbital electron populations 1.69970 1.05973 1.26254 1.51477 1.24994 0.94766 0.99021 0.95655 0.86635 0.80199 0.84278 0.77492 1.19812 1.21143 1.21170 1.21320 0.92974 0.91076 1.49590 0.92718 1.19238 0.93736 0.90952 0.97226 1.21204 0.97942 0.94873 0.96344 0.92653 1.21406 0.97012 1.00439 0.94941 1.21548 0.99082 0.97572 0.97485 1.21519 0.98163 0.98123 0.96106 1.20301 0.97328 0.93571 0.95924 0.89290 1.20157 0.93655 0.95485 0.96820 1.21029 0.99871 0.91996 1.00609 1.21091 0.94429 0.97803 1.00811 1.21047 0.94451 0.97759 1.02098 1.21115 0.99618 0.92658 1.00491 1.21201 0.94015 0.98210 1.00196 1.21610 0.97189 0.98109 0.96746 0.93228 0.95628 0.97036 0.94507 0.91429 0.93380 0.90252 0.92889 0.92829 0.86275 0.86604 0.86702 0.86462 0.85928 0.93427 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.51 -14.10 8.41 -34.44 -0.29 -14.39 16 8 H 0.05 1.48 7.06 -52.48 -0.37 1.11 16 9 C 0.03 0.63 3.74 -27.88 -0.10 0.53 16 10 C -0.09 -1.72 2.61 -90.62 -0.24 -1.96 16 11 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 12 C -0.10 -1.87 5.26 -26.73 -0.14 -2.01 16 13 C -0.12 -2.09 5.65 -26.73 -0.15 -2.24 16 14 C -0.10 -1.59 5.01 -26.73 -0.13 -1.72 16 15 C -0.05 -0.88 2.09 -91.77 -0.19 -1.07 16 16 H 0.09 1.68 6.28 -51.93 -0.33 1.35 16 17 C -0.06 -0.92 4.78 -104.62 -0.50 -1.42 16 18 C -0.12 -1.58 8.71 -39.58 -0.34 -1.92 16 19 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 20 C -0.14 -1.58 10.05 -39.58 -0.40 -1.98 16 21 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 22 C -0.12 -1.70 9.67 -39.58 -0.38 -2.08 16 23 C -0.10 -1.73 4.55 -26.73 -0.12 -1.85 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.03 0.67 4.82 -51.93 -0.25 0.41 16 26 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.36 6.95 -51.93 -0.36 1.00 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.61 6.32 -51.93 -0.33 1.29 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.77 7.37 -51.93 -0.38 0.38 16 33 H 0.12 1.49 7.10 -52.49 -0.37 1.12 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.11 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 37 H 0.12 1.72 7.95 -52.49 -0.42 1.30 16 38 H 0.05 0.75 7.40 -51.93 -0.38 0.36 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 302.82 15.07 4.56 4.56 Total: -1.00 -29.21 302.82 -9.74 -38.95 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.13 Total: 0.28 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: -3.89 Total: -34.41 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.74 Total: -25.97 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.21 -9.74 -38.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148505.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.782 kcal (2) G-P(sol) polarization free energy of solvation -29.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds