Wall clock time and date at job start Mon Mar 30 2020 07:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00117 * 2 1 4 4 H 1.48499 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46996 * 299.99653 * 3 2 1 6 6 H 1.48502 * 109.47233 * 59.99684 * 3 2 1 7 7 C 1.37874 * 119.99462 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99629 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00681 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47348 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.47303 * 54.99615 * 10 9 7 12 12 C 1.53002 * 109.46817 * 294.99872 * 10 9 7 13 13 C 1.52997 * 109.47415 * 300.00127 * 12 10 9 14 14 C 1.53006 * 109.47164 * 300.00027 * 13 12 10 15 15 C 1.52999 * 109.46626 * 59.99702 * 14 13 12 16 16 H 1.09000 * 109.47160 * 60.00369 * 15 14 13 17 17 C 1.50706 * 109.46957 * 180.02562 * 15 14 13 18 18 C 1.38232 * 119.99876 * 59.72409 * 17 15 14 19 19 C 1.38241 * 119.99890 * 179.78965 * 18 17 15 20 20 C 1.38236 * 119.99767 * 0.44170 * 19 18 17 21 21 C 1.38237 * 120.00103 * 359.81774 * 20 19 18 22 22 C 1.38235 * 119.99936 * 359.97210 * 21 20 19 23 23 C 1.52996 * 109.47131 * 175.00237 * 10 9 7 24 24 H 0.96996 * 120.00054 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46705 * 59.99768 * 9 7 2 26 26 H 1.09002 * 109.46894 * 299.99922 * 9 7 2 27 27 H 1.09000 * 109.46986 * 180.02562 * 12 10 9 28 28 H 1.09001 * 109.47601 * 60.00732 * 12 10 9 29 29 H 1.09001 * 109.46922 * 180.02562 * 13 12 10 30 30 H 1.09000 * 109.47140 * 59.99976 * 13 12 10 31 31 H 1.08993 * 109.46955 * 180.02562 * 14 13 12 32 32 H 1.09000 * 109.47050 * 300.00004 * 14 13 12 33 33 H 1.07999 * 120.00050 * 0.02562 * 18 17 15 34 34 H 1.07999 * 119.99940 * 180.28301 * 19 18 17 35 35 H 1.08001 * 119.99881 * 179.83329 * 20 19 18 36 36 H 1.07995 * 119.99584 * 179.97438 * 21 20 19 37 37 H 1.08001 * 119.99724 * 180.02562 * 22 21 20 38 38 H 1.09000 * 109.47054 * 179.97438 * 23 10 9 39 39 H 1.09001 * 109.46997 * 299.99574 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9293 -3.5553 0.8422 12 6 3.0399 -3.6536 -1.3069 13 6 2.0796 -3.8035 -2.4885 14 6 1.3187 -5.1250 -2.3628 15 6 0.5241 -5.1335 -1.0554 16 1 -0.1843 -4.3050 -1.0554 17 6 -0.2249 -6.4354 -0.9313 18 6 0.4670 -7.6319 -0.9148 19 6 -0.2197 -8.8259 -0.7965 20 6 -1.5990 -8.8237 -0.7039 21 6 -2.2913 -7.6273 -0.7258 22 6 -1.6042 -6.4332 -0.8397 23 6 1.4843 -4.9835 0.1262 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 3.7479 -4.4823 -1.3071 28 1 3.5820 -2.7122 -1.3965 29 1 2.6459 -3.7979 -3.4198 30 1 1.3713 -2.9751 -2.4884 31 1 0.6350 -5.2321 -3.2048 32 1 2.0270 -5.9535 -2.3628 33 1 1.5443 -7.6338 -0.9905 34 1 0.3212 -9.7605 -0.7790 35 1 -2.1356 -9.7566 -0.6142 36 1 -3.3688 -7.6257 -0.6539 37 1 -2.1451 -5.4985 -0.8564 38 1 2.1926 -5.8121 0.1257 39 1 0.9181 -4.9896 1.0576 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261148505.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:17 Heat of formation + Delta-G solvation = -27.450527 kcal Electronic energy + Delta-G solvation = -17583.138486 eV Core-core repulsion = 15067.120095 eV Total energy + Delta-G solvation = -2516.018391 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.87588 -39.05884 -35.19056 -33.60605 -32.22987 -31.72006 -29.71106 -28.67935 -25.07195 -24.23414 -23.41930 -22.85269 -21.47857 -19.26526 -18.35003 -17.69892 -16.50172 -16.47643 -16.07418 -15.41092 -15.21087 -14.75359 -14.62400 -14.26804 -14.05644 -13.84612 -13.58035 -13.16694 -13.09714 -12.89628 -12.60939 -12.41263 -12.30285 -12.10764 -12.01819 -11.71070 -11.49123 -11.23652 -10.87575 -10.72725 -10.57232 -10.42184 -9.75152 -9.48066 -8.15180 -6.23242 0.53927 0.56702 1.38384 1.39174 1.51618 2.42581 2.95713 3.18321 3.74956 3.87144 4.03132 4.16473 4.22947 4.33496 4.40283 4.49120 4.55206 4.67136 4.72968 4.73846 4.75519 4.81727 4.83840 5.01670 5.15861 5.20248 5.24627 5.30950 5.33978 5.35821 5.45702 5.56514 5.61029 5.67807 5.67953 5.74168 5.89143 5.89723 5.98699 6.20836 6.35328 6.93997 7.44482 8.96847 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.036707 B = 0.005398 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.622090 B = 5186.259207 C = 5572.167192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.955 3.045 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.034 3.966 10 C -0.082 4.082 11 H 0.049 0.951 12 C -0.096 4.096 13 C -0.117 4.117 14 C -0.094 4.094 15 C -0.047 4.047 16 H 0.049 0.951 17 C -0.079 4.079 18 C -0.123 4.123 19 C -0.121 4.121 20 C -0.133 4.133 21 C -0.125 4.125 22 C -0.143 4.143 23 C -0.091 4.091 24 H 0.260 0.740 25 H 0.008 0.992 26 H -0.027 1.027 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.133 0.867 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.136 0.864 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.804 -17.256 -3.707 17.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.781 3.219 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.563 4.563 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.101 4.101 11 H 0.068 0.932 12 C -0.134 4.134 13 C -0.155 4.155 14 C -0.131 4.131 15 C -0.065 4.065 16 H 0.067 0.933 17 C -0.079 4.079 18 C -0.141 4.141 19 C -0.139 4.139 20 C -0.151 4.151 21 C -0.143 4.143 22 C -0.161 4.161 23 C -0.128 4.128 24 H 0.069 0.931 25 H 0.026 0.974 26 H -0.008 1.008 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.151 0.849 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.154 0.846 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.673 -17.145 -3.707 17.554 hybrid contribution -0.157 1.615 0.265 1.644 sum 0.516 -15.530 -3.442 15.915 Atomic orbital electron populations 1.70112 1.07713 1.27262 1.52638 1.25891 0.95615 1.02965 0.95324 0.85537 0.79280 0.79532 0.77566 1.18572 1.20590 1.20756 1.21721 0.93314 0.92308 1.48934 0.92383 1.19086 0.94036 0.92616 0.94499 1.21107 0.97057 0.94443 0.97474 0.93223 1.21358 0.97258 1.00767 0.93973 1.21496 0.98429 0.97316 0.98210 1.21469 0.98383 0.97650 0.95582 1.20116 0.96625 0.93571 0.96237 0.93270 1.20020 0.93805 0.95200 0.98889 1.21197 1.00608 0.91738 1.00547 1.21473 0.94754 0.98410 0.99273 1.21454 0.94742 0.98454 1.00434 1.21373 1.00744 0.92313 0.99879 1.21270 0.94299 0.98750 1.01794 1.21516 0.97481 0.97252 0.96570 0.93126 0.97391 1.00819 0.91026 0.93491 0.91080 0.94318 0.92350 0.90155 0.84931 0.83568 0.83669 0.84616 0.87399 0.90415 0.94148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.02 13.29 21.45 0.28 -57.74 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.96 45.11 29.54 68.60 2.03 47.13 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 7 C -0.52 -29.93 8.41 25.60 0.22 -29.72 16 8 H 0.06 3.20 7.06 -2.90 -0.02 3.18 16 9 C 0.03 1.82 3.74 29.85 0.11 1.94 16 10 C -0.08 -3.39 2.61 -10.79 -0.03 -3.42 16 11 H 0.05 2.07 8.14 -2.39 -0.02 2.06 16 12 C -0.10 -3.49 5.26 30.59 0.16 -3.33 16 13 C -0.12 -4.06 5.65 30.60 0.17 -3.89 16 14 C -0.09 -2.81 5.01 30.60 0.15 -2.66 16 15 C -0.05 -1.59 2.09 -11.54 -0.02 -1.61 16 16 H 0.05 2.02 6.28 -2.39 -0.01 2.01 16 17 C -0.08 -2.34 4.78 -19.86 -0.09 -2.43 16 18 C -0.12 -2.99 8.71 22.27 0.19 -2.80 16 19 C -0.12 -2.46 10.05 22.27 0.22 -2.24 16 20 C -0.13 -2.68 10.05 22.27 0.22 -2.45 16 21 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 22 C -0.14 -4.18 9.67 22.27 0.22 -3.97 16 23 C -0.09 -3.17 4.55 30.59 0.14 -3.03 16 24 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 25 H 0.01 0.44 4.82 -2.38 -0.01 0.43 16 26 H -0.03 -1.58 8.14 -2.39 -0.02 -1.60 16 27 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.05 1.88 6.95 -2.39 -0.02 1.86 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.04 1.64 6.32 -2.39 -0.02 1.63 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 2.02 7.37 -2.39 -0.02 2.00 16 33 H 0.13 2.80 7.10 -2.91 -0.02 2.78 16 34 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 35 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 36 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.11 3.32 7.95 -2.91 -0.02 3.30 16 38 H 0.08 2.25 7.40 -2.39 -0.02 2.24 16 39 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -65.55 302.82 5.67 -59.88 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 1.01 Total: 12.67 kcal Atomic # 6 Polarization: -64.29 SS G_CDS: 2.35 Total: -61.94 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: 0.28 Total: -57.74 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -65.55 5.67 -59.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148505.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.429 kcal (2) G-P(sol) polarization free energy of solvation -65.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds