Wall clock time and date at job start Mon Mar 30 2020 07:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00188 * 2 1 4 4 H 1.48497 * 109.47297 * 270.00639 * 3 2 1 5 5 H 1.48500 * 109.46804 * 30.00551 * 3 2 1 6 6 H 1.48497 * 109.47225 * 150.00330 * 3 2 1 7 7 C 1.37874 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99977 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00223 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47247 * 180.02562 * 9 7 2 11 11 H 1.09007 * 109.46848 * 305.00232 * 10 9 7 12 12 C 1.53005 * 109.47134 * 64.99719 * 10 9 7 13 13 C 1.53002 * 109.46628 * 60.00468 * 12 10 9 14 14 C 1.52992 * 109.47335 * 59.99942 * 13 12 10 15 15 C 1.52999 * 109.47182 * 299.99937 * 14 13 12 16 16 H 1.09005 * 109.47018 * 299.99968 * 15 14 13 17 17 C 1.50701 * 109.47126 * 180.02562 * 15 14 13 18 18 C 1.38235 * 119.99808 * 119.99864 * 17 15 14 19 19 C 1.38243 * 119.99602 * 179.97438 * 18 17 15 20 20 C 1.38232 * 120.00069 * 0.09581 * 19 18 17 21 21 C 1.38234 * 119.99842 * 359.83724 * 20 19 18 22 22 C 1.38230 * 119.99865 * 299.97609 * 17 15 14 23 23 C 1.52992 * 109.47344 * 185.00092 * 10 9 7 24 24 H 0.96996 * 119.99688 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47130 * 60.00527 * 9 7 2 26 26 H 1.09001 * 109.47093 * 300.00123 * 9 7 2 27 27 H 1.08998 * 109.46997 * 179.97438 * 12 10 9 28 28 H 1.08997 * 109.47147 * 300.00026 * 12 10 9 29 29 H 1.09000 * 109.46860 * 179.97438 * 13 12 10 30 30 H 1.08998 * 109.46940 * 299.99433 * 13 12 10 31 31 H 1.09007 * 109.47263 * 179.97438 * 14 13 12 32 32 H 1.08998 * 109.47522 * 59.99847 * 14 13 12 33 33 H 1.08000 * 120.00616 * 359.70324 * 18 17 15 34 34 H 1.08001 * 119.99556 * 179.97438 * 19 18 17 35 35 H 1.07997 * 119.99649 * 179.97438 * 20 19 18 36 36 H 1.08008 * 119.99453 * 180.11401 * 21 20 19 37 37 H 1.08001 * 120.00350 * 359.97438 * 22 17 15 38 38 H 1.08998 * 109.47522 * 179.97438 * 23 10 9 39 39 H 1.09000 * 109.47061 * 59.99867 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 1 2.9293 -3.5552 -0.8424 12 6 3.0400 -3.6536 1.3068 13 6 2.0797 -3.8037 2.4884 14 6 1.3188 -5.1251 2.3627 15 6 0.5241 -5.1336 1.0553 16 1 -0.1842 -4.3051 1.0553 17 6 -0.2258 -6.4349 0.9318 18 6 -1.6051 -6.4318 0.8402 19 6 -2.2929 -7.6255 0.7264 20 6 -1.6016 -8.8223 0.7061 21 6 -0.2222 -8.8253 0.7963 22 6 0.4657 -7.6316 0.9096 23 6 1.4844 -4.9835 -0.1263 24 1 -0.4849 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8897 27 1 3.7479 -4.4824 1.3070 28 1 3.5821 -2.7123 1.3963 29 1 2.6459 -3.7981 3.4198 30 1 1.3714 -2.9752 2.4884 31 1 0.6350 -5.2322 3.2048 32 1 2.0271 -5.9536 2.3627 33 1 -2.1457 -5.4970 0.8620 34 1 -3.3706 -7.6230 0.6552 35 1 -2.1390 -9.7549 0.6175 36 1 0.3181 -9.7604 0.7785 37 1 1.5434 -7.6340 0.9803 38 1 2.1926 -5.8120 -0.1267 39 1 0.9181 -4.9896 -1.0576 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261148510.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:21 Heat of formation + Delta-G solvation = -14.145575 kcal Electronic energy + Delta-G solvation = -17582.509341 eV Core-core repulsion = 15067.067896 eV Total energy + Delta-G solvation = -2515.441445 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.65995 -37.76501 -33.32330 -32.05444 -30.75786 -30.64583 -28.40626 -26.82008 -23.27186 -22.90026 -22.28303 -21.42974 -20.24688 -17.63728 -16.77021 -16.14792 -15.22744 -14.96053 -14.47745 -14.18067 -13.75565 -13.46025 -13.10043 -13.05487 -12.78207 -12.30591 -11.98606 -11.76602 -11.56428 -11.14074 -10.97917 -10.94936 -10.90411 -10.58133 -10.44187 -10.19596 -9.86201 -9.59155 -9.32472 -8.92555 -8.79202 -8.76046 -8.41828 -8.26665 -5.94999 -3.95470 1.54402 1.55576 3.33900 3.40557 3.43423 3.95985 4.49867 4.94997 5.01677 5.10920 5.26565 5.37588 5.40638 5.43982 5.63702 5.69242 5.76067 5.93938 6.00872 6.14438 6.16899 6.20240 6.21391 6.22544 6.26367 6.47607 6.60467 6.60698 6.64787 6.70378 6.86286 6.96944 6.99040 7.04661 7.15139 7.19985 7.35534 7.76671 7.91890 8.07145 8.50905 9.11118 9.67640 11.16299 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.036695 B = 0.005398 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.870547 B = 5185.915854 C = 5571.889474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.026 3.974 10 C -0.085 4.085 11 H 0.055 0.945 12 C -0.101 4.101 13 C -0.120 4.120 14 C -0.102 4.102 15 C -0.053 4.053 16 H 0.089 0.911 17 C -0.061 4.061 18 C -0.118 4.118 19 C -0.121 4.121 20 C -0.135 4.135 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.099 4.099 24 H 0.259 0.741 25 H 0.011 0.989 26 H 0.026 0.974 27 H 0.036 0.964 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.047 0.953 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.640 -14.954 3.145 15.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.104 4.104 11 H 0.073 0.927 12 C -0.138 4.138 13 C -0.157 4.157 14 C -0.139 4.139 15 C -0.071 4.071 16 H 0.107 0.893 17 C -0.061 4.061 18 C -0.136 4.136 19 C -0.139 4.139 20 C -0.154 4.154 21 C -0.141 4.141 22 C -0.135 4.135 23 C -0.136 4.136 24 H 0.068 0.932 25 H 0.030 0.970 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.066 0.934 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.786 -14.834 3.151 15.185 hybrid contribution 0.364 0.945 -0.079 1.016 sum -0.421 -13.888 3.072 14.230 Atomic orbital electron populations 1.69962 1.05970 1.26360 1.51379 1.24992 0.94768 0.99006 0.95644 0.86688 0.79919 0.83942 0.78017 1.20820 1.21358 1.19954 1.21279 0.92932 0.91088 1.49734 0.92779 1.19233 0.93728 0.90932 0.97219 1.21208 0.97943 0.94874 0.96341 0.92657 1.21407 0.97013 1.00437 0.94941 1.21545 0.99082 0.97570 0.97486 1.21518 0.98161 0.98122 0.96105 1.20299 0.97318 0.93579 0.95925 0.89295 1.20155 0.93660 0.95486 0.96821 1.21203 0.94012 0.98215 1.00187 1.21117 0.99617 0.92654 1.00497 1.21044 0.94456 0.97754 1.02096 1.21090 0.94422 0.97804 1.00822 1.21027 0.99867 0.91999 1.00607 1.21606 0.97190 0.98110 0.96743 0.93174 0.97048 0.95628 0.94510 0.91426 0.93383 0.90251 0.92891 0.92833 0.85927 0.86462 0.86702 0.86605 0.86275 0.93428 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.12 8.41 -34.44 -0.29 -14.41 16 8 H 0.05 1.46 7.06 -52.48 -0.37 1.09 16 9 C 0.03 0.64 3.74 -27.88 -0.10 0.54 16 10 C -0.09 -1.73 2.61 -90.62 -0.24 -1.96 16 11 H 0.05 1.15 8.14 -51.92 -0.42 0.72 16 12 C -0.10 -1.87 5.26 -26.73 -0.14 -2.01 16 13 C -0.12 -2.09 5.65 -26.73 -0.15 -2.25 16 14 C -0.10 -1.59 5.02 -26.74 -0.13 -1.72 16 15 C -0.05 -0.88 2.09 -91.77 -0.19 -1.07 16 16 H 0.09 1.68 6.28 -51.93 -0.33 1.35 16 17 C -0.06 -0.92 4.78 -104.63 -0.50 -1.42 16 18 C -0.12 -1.70 9.67 -39.58 -0.38 -2.08 16 19 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 20 C -0.14 -1.58 10.05 -39.59 -0.40 -1.98 16 21 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 22 C -0.12 -1.58 8.71 -39.59 -0.34 -1.92 16 23 C -0.10 -1.73 4.54 -26.74 -0.12 -1.85 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.03 0.67 4.82 -51.93 -0.25 0.41 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.37 6.95 -51.93 -0.36 1.01 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.62 6.32 -51.93 -0.33 1.29 16 31 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.05 0.77 7.39 -51.93 -0.38 0.38 16 33 H 0.12 1.72 7.95 -52.49 -0.42 1.30 16 34 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.11 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 37 H 0.12 1.49 7.11 -52.49 -0.37 1.12 16 38 H 0.05 0.75 7.39 -51.93 -0.38 0.36 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 302.83 15.07 4.56 4.56 Total: -1.00 -29.18 302.83 -9.74 -38.92 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -6.13 Total: 0.31 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: -3.89 Total: -34.42 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.74 Total: -25.97 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.18 -9.74 -38.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148510.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.777 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds