Wall clock time and date at job start Mon Mar 30 2020 07:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47196 * 304.99679 * 10 9 7 12 12 C 1.53005 * 109.47085 * 64.99687 * 10 9 7 13 13 C 1.53005 * 109.46667 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47147 * 300.00010 * 13 12 10 15 15 C 1.52994 * 109.47078 * 60.00639 * 14 13 12 16 16 H 1.09001 * 109.47894 * 59.99503 * 15 14 13 17 17 C 1.50700 * 109.46952 * 180.02562 * 15 14 13 18 18 C 1.38234 * 120.00525 * 59.72185 * 17 15 14 19 19 C 1.38234 * 120.00381 * 179.78780 * 18 17 15 20 20 C 1.38237 * 119.99741 * 0.44558 * 19 18 17 21 21 C 1.38240 * 119.99973 * 359.80829 * 20 19 18 22 22 C 1.38237 * 120.00026 * 359.97438 * 21 20 19 23 23 C 1.53000 * 109.47153 * 184.99569 * 10 9 7 24 24 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 26 26 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 27 27 H 1.08993 * 109.46967 * 299.99863 * 12 10 9 28 28 H 1.08997 * 109.46762 * 60.00579 * 12 10 9 29 29 H 1.09001 * 109.46316 * 179.97438 * 13 12 10 30 30 H 1.09006 * 109.47033 * 60.00620 * 13 12 10 31 31 H 1.09001 * 109.47164 * 299.99695 * 14 13 12 32 32 H 1.09000 * 109.46758 * 180.02562 * 14 13 12 33 33 H 1.08000 * 119.99154 * 359.97438 * 18 17 15 34 34 H 1.07990 * 120.00311 * 180.27258 * 19 18 17 35 35 H 1.07993 * 120.00396 * 179.83606 * 20 19 18 36 36 H 1.07997 * 120.00096 * 180.02562 * 21 20 19 37 37 H 1.07996 * 119.99754 * 179.97438 * 22 21 20 38 38 H 1.08993 * 109.47376 * 300.00152 * 23 10 9 39 39 H 1.09006 * 109.46634 * 60.00096 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 1 2.9300 -3.5549 -0.8427 12 6 3.0391 -3.6541 1.3065 13 6 4.0328 -4.8175 1.3069 14 6 3.2715 -6.1386 1.1804 15 6 2.4778 -6.1465 -0.1275 16 1 3.1626 -6.0397 -0.9689 17 6 1.7275 -7.4475 -0.2519 18 6 0.8004 -7.8054 0.7090 19 6 0.1090 -8.9967 0.5927 20 6 0.3513 -9.8346 -0.4798 21 6 1.2822 -9.4792 -1.4380 22 6 1.9704 -8.2857 -1.3240 23 6 1.4845 -4.9835 -0.1282 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 0.6246 -2.5563 -0.8919 27 1 3.5810 -2.7128 1.3968 28 1 2.3543 -3.7614 2.1477 29 1 4.5987 -4.8115 2.2386 30 1 4.7177 -4.7106 0.4657 31 1 2.5868 -6.2454 2.0217 32 1 3.9795 -6.9674 1.1812 33 1 0.6142 -7.1527 1.5491 34 1 -0.6184 -9.2742 1.3410 35 1 -0.1869 -10.7665 -0.5695 36 1 1.4713 -10.1335 -2.2761 37 1 2.6979 -8.0083 -2.0724 38 1 0.7998 -5.0907 0.7129 39 1 0.9189 -4.9891 -1.0601 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261148515.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:24 Heat of formation + Delta-G solvation = -32.454086 kcal Electronic energy + Delta-G solvation = -17254.834801 eV Core-core repulsion = 14738.599440 eV Total energy + Delta-G solvation = -2516.235361 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.76221 -38.90817 -35.45841 -33.67025 -32.52449 -31.72699 -29.75952 -28.44719 -25.13375 -24.18000 -23.42142 -22.45243 -21.08531 -20.32580 -18.40614 -17.65520 -16.60125 -16.14118 -16.06280 -15.53923 -15.20667 -14.68512 -14.57835 -14.41467 -14.08047 -13.90971 -13.54990 -13.36609 -13.10657 -12.83647 -12.51881 -12.41296 -12.16762 -12.11432 -11.86522 -11.80388 -11.58171 -11.43021 -11.10123 -10.76922 -10.59980 -10.50115 -9.75523 -9.48829 -8.17059 -6.26760 0.52785 0.56344 1.39556 1.40756 1.51709 2.41986 2.94632 3.15964 3.71030 3.84395 4.04128 4.13562 4.21958 4.31288 4.37870 4.42843 4.46186 4.64012 4.72630 4.73094 4.75657 4.77664 4.81840 5.01616 5.18496 5.20100 5.22737 5.25492 5.30644 5.34675 5.46957 5.50609 5.55471 5.63844 5.66425 5.68305 5.82034 5.87563 5.92236 6.19961 6.30461 6.89600 7.41711 8.95015 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.038023 B = 0.004725 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.210512 B = 5924.574616 C = 6258.380685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.003 4.003 3 Si 0.961 3.039 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.061 0.939 9 C 0.031 3.969 10 C -0.072 4.072 11 H 0.052 0.948 12 C -0.100 4.100 13 C -0.112 4.112 14 C -0.100 4.100 15 C -0.041 4.041 16 H 0.078 0.922 17 C -0.081 4.081 18 C -0.131 4.131 19 C -0.128 4.128 20 C -0.134 4.134 21 C -0.125 4.125 22 C -0.132 4.132 23 C -0.094 4.094 24 H 0.261 0.739 25 H -0.013 1.013 26 H -0.018 1.018 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.050 0.950 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.240 -18.919 0.538 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.200 4.200 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.566 4.566 8 H 0.080 0.920 9 C -0.006 4.006 10 C -0.090 4.090 11 H 0.070 0.930 12 C -0.138 4.138 13 C -0.149 4.149 14 C -0.137 4.137 15 C -0.060 4.060 16 H 0.096 0.904 17 C -0.081 4.081 18 C -0.149 4.149 19 C -0.145 4.145 20 C -0.152 4.152 21 C -0.142 4.142 22 C -0.150 4.150 23 C -0.131 4.131 24 H 0.070 0.930 25 H 0.005 0.995 26 H 0.000 1.000 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.135 0.865 34 H 0.154 0.846 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.148 0.852 38 H 0.069 0.931 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.103 -18.811 0.546 19.498 hybrid contribution -0.221 1.365 -0.069 1.385 sum 4.882 -17.445 0.477 18.122 Atomic orbital electron populations 1.70118 1.07853 1.27522 1.52303 1.25971 0.95687 1.03268 0.95082 0.85505 0.78772 0.78734 0.78414 1.19919 1.20930 1.18599 1.21661 0.93432 0.92063 1.49475 0.92035 1.19037 0.94105 0.93334 0.94080 1.21040 0.96780 0.93641 0.97586 0.93001 1.21419 0.97624 0.98222 0.96531 1.21539 0.97391 0.93828 1.02170 1.21519 0.98640 0.97355 0.96187 1.20134 0.95927 0.90528 0.99386 0.90385 1.20015 0.97051 0.95807 0.95241 1.21178 0.96949 0.97445 0.99303 1.21414 0.99756 0.94333 0.99038 1.21449 0.98668 1.00499 0.94570 1.21440 0.96413 0.96688 0.99691 1.21324 1.00853 0.94972 0.97888 1.21539 0.97400 0.93743 1.00459 0.92983 0.99488 0.99954 0.93268 0.93732 0.90853 0.91828 0.92149 0.90708 0.86493 0.84562 0.83941 0.83982 0.85232 0.93083 0.93887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.41 13.29 21.45 0.28 -58.13 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.53 -30.39 8.41 25.60 0.22 -30.18 16 8 H 0.06 3.39 7.06 -2.91 -0.02 3.37 16 9 C 0.03 1.71 4.45 29.85 0.13 1.84 16 10 C -0.07 -3.01 2.14 -10.79 -0.02 -3.03 16 11 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 12 C -0.10 -3.74 5.01 30.60 0.15 -3.59 16 13 C -0.11 -3.13 5.92 30.60 0.18 -2.95 16 14 C -0.10 -2.55 5.01 30.59 0.15 -2.39 16 15 C -0.04 -1.16 2.36 -11.56 -0.03 -1.19 16 16 H 0.08 2.13 7.88 -2.39 -0.02 2.11 16 17 C -0.08 -2.12 4.78 -19.87 -0.09 -2.22 16 18 C -0.13 -3.32 8.71 22.27 0.19 -3.13 16 19 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 20 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 21 C -0.12 -2.46 10.05 22.27 0.22 -2.24 16 22 C -0.13 -3.06 9.67 22.27 0.22 -2.85 16 23 C -0.09 -3.35 4.30 30.58 0.13 -3.22 16 24 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 25 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 26 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 27 H 0.05 2.01 6.95 -2.39 -0.02 1.99 16 28 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.06 1.56 7.37 -2.39 -0.02 1.54 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.12 2.98 7.10 -2.91 -0.02 2.96 16 34 H 0.14 2.32 8.06 -2.92 -0.02 2.30 16 35 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.13 2.62 7.95 -2.91 -0.02 2.60 16 38 H 0.05 1.87 7.40 -2.39 -0.02 1.85 16 39 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -65.64 309.83 5.67 -59.98 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.99 Total: 10.86 kcal Atomic # 6 Polarization: -62.10 SS G_CDS: 2.36 Total: -59.73 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.28 Total: -58.13 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -65.64 5.67 -59.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148515.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.524 kcal (2) G-P(sol) polarization free energy of solvation -65.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds