Wall clock time and date at job start Mon Mar 30 2020 07:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99967 * 2 1 4 4 H 1.48493 * 109.47472 * 270.00131 * 3 2 1 5 5 H 1.48499 * 109.47017 * 30.00333 * 3 2 1 6 6 H 1.48502 * 109.47012 * 150.00176 * 3 2 1 7 7 C 1.37877 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99898 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99708 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47025 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.46652 * 55.00425 * 10 9 7 12 12 C 1.52996 * 109.47302 * 295.00297 * 10 9 7 13 13 C 1.53002 * 109.46891 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46978 * 60.00410 * 13 12 10 15 15 C 1.53006 * 109.47164 * 299.99874 * 14 13 12 16 16 H 1.08998 * 109.46505 * 299.99708 * 15 14 13 17 17 C 1.50697 * 109.47239 * 180.02562 * 15 14 13 18 18 C 1.38235 * 120.00046 * 299.72390 * 17 15 14 19 19 C 1.38231 * 120.00363 * 179.78984 * 18 17 15 20 20 C 1.38235 * 119.99688 * 0.46224 * 19 18 17 21 21 C 1.38235 * 119.99957 * 359.76695 * 20 19 18 22 22 C 1.38226 * 120.00099 * 0.02706 * 21 20 19 23 23 C 1.52997 * 109.47127 * 59.99836 * 15 14 13 24 24 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46901 * 60.00158 * 9 7 2 26 26 H 1.08994 * 109.47368 * 300.00605 * 9 7 2 27 27 H 1.08992 * 109.47554 * 299.99692 * 12 10 9 28 28 H 1.09004 * 109.47108 * 59.99942 * 12 10 9 29 29 H 1.09002 * 109.47097 * 180.02562 * 13 12 10 30 30 H 1.09001 * 109.47142 * 300.00176 * 13 12 10 31 31 H 1.09001 * 109.47375 * 59.99908 * 14 13 12 32 32 H 1.09000 * 109.47140 * 179.97438 * 14 13 12 33 33 H 1.08009 * 119.99451 * 359.97438 * 18 17 15 34 34 H 1.07998 * 120.00258 * 180.25575 * 19 18 17 35 35 H 1.08004 * 119.99590 * 179.79184 * 20 19 18 36 36 H 1.08000 * 119.99479 * 179.97438 * 21 20 19 37 37 H 1.07996 * 120.00316 * 179.97438 * 22 21 20 38 38 H 1.09002 * 109.47153 * 180.02562 * 23 15 14 39 39 H 1.09001 * 109.46832 * 60.00321 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 1 2.9300 -3.5555 0.8396 12 6 3.0391 -3.6529 -1.3097 13 6 4.0338 -4.8155 -1.3106 14 6 3.2735 -6.1372 -1.1847 15 6 2.4795 -6.1464 0.1232 16 1 3.1643 -6.0395 0.9645 17 6 1.7312 -7.4484 0.2475 18 6 0.7965 -7.8023 -0.7075 19 6 0.1131 -8.9987 -0.5959 20 6 0.3575 -9.8368 0.4759 21 6 1.2888 -9.4808 1.4334 22 6 1.9752 -8.2864 1.3195 23 6 1.4850 -4.9838 0.1241 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5566 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.3545 -3.7595 -2.1511 28 1 3.5811 -2.7114 -1.3992 29 1 4.5997 -4.8088 -2.2422 30 1 4.7185 -4.7086 -0.4692 31 1 2.5888 -6.2442 -2.0261 32 1 3.9821 -6.9655 -1.1859 33 1 0.6023 -7.1453 -1.5425 34 1 -0.6141 -9.2771 -1.3442 35 1 -0.1788 -10.7700 0.5649 36 1 1.4794 -10.1354 2.2710 37 1 2.7025 -8.0080 2.0678 38 1 0.9197 -4.9900 1.0561 39 1 0.8003 -5.0907 -0.7172 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261148519.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:29 Heat of formation + Delta-G solvation = -18.954589 kcal Electronic energy + Delta-G solvation = -17253.762927 eV Core-core repulsion = 14738.112947 eV Total energy + Delta-G solvation = -2515.649979 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.67954 -37.65673 -33.61229 -32.15142 -30.98096 -30.83589 -28.52360 -26.61314 -23.46682 -22.81353 -22.44023 -21.17036 -19.72294 -18.88992 -16.72948 -16.20710 -15.20674 -15.04407 -14.47520 -14.22978 -13.84471 -13.51787 -13.26952 -13.06578 -13.02573 -12.28406 -12.12047 -11.76912 -11.61577 -11.20164 -11.05934 -11.02150 -10.72125 -10.66100 -10.49885 -10.24804 -10.06174 -9.78897 -9.44389 -9.05073 -8.87044 -8.85078 -8.45746 -8.29872 -5.94923 -3.96167 1.45025 1.46684 3.34070 3.40532 3.43609 3.86607 4.49498 4.80643 4.90927 5.03466 5.16396 5.22572 5.30328 5.40794 5.51898 5.57639 5.62719 5.76958 5.87524 6.00781 6.03188 6.08534 6.12001 6.14942 6.23267 6.32892 6.48413 6.54185 6.56044 6.60448 6.71170 6.80792 6.88239 7.06644 7.14876 7.16528 7.26607 7.74126 7.89900 8.06102 8.49549 9.10620 9.67182 11.16482 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.038034 B = 0.004725 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.003348 B = 5925.061083 C = 6258.872501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.027 3.973 10 C -0.079 4.079 11 H 0.055 0.945 12 C -0.104 4.104 13 C -0.120 4.120 14 C -0.105 4.105 15 C -0.051 4.051 16 H 0.074 0.926 17 C -0.064 4.064 18 C -0.114 4.114 19 C -0.120 4.120 20 C -0.134 4.134 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.102 4.102 24 H 0.259 0.741 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.056 0.944 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.754 -17.399 -0.593 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.098 4.098 11 H 0.073 0.927 12 C -0.142 4.142 13 C -0.158 4.158 14 C -0.142 4.142 15 C -0.069 4.069 16 H 0.092 0.908 17 C -0.064 4.064 18 C -0.132 4.132 19 C -0.138 4.138 20 C -0.152 4.152 21 C -0.140 4.140 22 C -0.140 4.140 23 C -0.140 4.140 24 H 0.069 0.931 25 H 0.033 0.967 26 H 0.032 0.968 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.075 0.925 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.603 -17.276 -0.590 17.658 hybrid contribution 0.325 0.935 0.045 0.991 sum 3.928 -16.342 -0.545 16.816 Atomic orbital electron populations 1.69969 1.06031 1.26411 1.51244 1.25019 0.94789 0.99117 0.95585 0.86658 0.79892 0.83806 0.78031 1.20760 1.21327 1.19929 1.21266 0.92958 0.91006 1.49911 0.92640 1.19128 0.93684 0.91167 0.97048 1.21194 0.97823 0.94290 0.96488 0.92680 1.21507 0.97287 0.97215 0.98174 1.21608 0.98260 0.95153 1.00780 1.21548 0.98473 0.97426 0.96759 1.20288 0.96703 0.91319 0.98628 0.90800 1.20077 0.96151 0.95945 0.94186 1.21077 0.96261 0.96554 0.99269 1.21131 0.99764 0.94751 0.98193 1.21070 0.99016 0.99800 0.95277 1.21091 0.97003 0.96901 0.98980 1.21101 1.00308 0.94519 0.98023 1.21693 0.97047 0.93764 1.01478 0.93133 0.96693 0.96763 0.92915 0.91273 0.92835 0.92509 0.92125 0.92899 0.85978 0.86385 0.86590 0.86485 0.86286 0.92538 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.38 8.41 -34.44 -0.29 -14.67 16 8 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 9 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 10 C -0.08 -1.61 2.14 -90.62 -0.19 -1.81 16 11 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 12 C -0.10 -1.93 5.01 -26.73 -0.13 -2.06 16 13 C -0.12 -1.79 5.92 -26.73 -0.16 -1.95 16 14 C -0.10 -1.43 5.02 -26.73 -0.13 -1.57 16 15 C -0.05 -0.74 2.36 -91.77 -0.22 -0.96 16 16 H 0.07 1.06 7.88 -51.93 -0.41 0.65 16 17 C -0.06 -0.87 4.78 -104.63 -0.50 -1.37 16 18 C -0.11 -1.49 8.71 -39.58 -0.34 -1.84 16 19 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 20 C -0.13 -1.47 10.05 -39.58 -0.40 -1.86 16 21 C -0.12 -1.37 10.05 -39.59 -0.40 -1.77 16 22 C -0.12 -1.52 9.67 -39.59 -0.38 -1.90 16 23 C -0.10 -1.78 4.30 -26.73 -0.11 -1.89 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.39 6.95 -51.93 -0.36 1.03 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.83 7.41 -51.93 -0.38 0.44 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.12 1.55 7.11 -52.48 -0.37 1.18 16 34 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.12 1.32 7.95 -52.49 -0.42 0.91 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.02 7.38 -51.93 -0.38 0.63 16 LS Contribution 309.85 15.07 4.67 4.67 Total: -1.00 -29.85 309.85 -9.98 -39.83 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -6.48 Total: -1.44 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: -3.88 Total: -33.38 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 0.74 Total: -26.42 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.85 -9.98 -39.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148519.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.877 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds