Wall clock time and date at job start Mon Mar 30 2020 07:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99967 * 2 1 4 4 H 1.48493 * 109.47472 * 270.00131 * 3 2 1 5 5 H 1.48499 * 109.47017 * 30.00333 * 3 2 1 6 6 H 1.48502 * 109.47012 * 150.00176 * 3 2 1 7 7 C 1.37877 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99898 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99708 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47025 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.46652 * 55.00425 * 10 9 7 12 12 C 1.52996 * 109.47302 * 295.00297 * 10 9 7 13 13 C 1.53002 * 109.46891 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46978 * 60.00410 * 13 12 10 15 15 C 1.53006 * 109.47164 * 299.99874 * 14 13 12 16 16 H 1.08998 * 109.46505 * 299.99708 * 15 14 13 17 17 C 1.50697 * 109.47239 * 180.02562 * 15 14 13 18 18 C 1.38235 * 120.00046 * 299.72390 * 17 15 14 19 19 C 1.38231 * 120.00363 * 179.78984 * 18 17 15 20 20 C 1.38235 * 119.99688 * 0.46224 * 19 18 17 21 21 C 1.38235 * 119.99957 * 359.76695 * 20 19 18 22 22 C 1.38226 * 120.00099 * 0.02706 * 21 20 19 23 23 C 1.52997 * 109.47127 * 59.99836 * 15 14 13 24 24 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46901 * 60.00158 * 9 7 2 26 26 H 1.08994 * 109.47368 * 300.00605 * 9 7 2 27 27 H 1.08992 * 109.47554 * 299.99692 * 12 10 9 28 28 H 1.09004 * 109.47108 * 59.99942 * 12 10 9 29 29 H 1.09002 * 109.47097 * 180.02562 * 13 12 10 30 30 H 1.09001 * 109.47142 * 300.00176 * 13 12 10 31 31 H 1.09001 * 109.47375 * 59.99908 * 14 13 12 32 32 H 1.09000 * 109.47140 * 179.97438 * 14 13 12 33 33 H 1.08009 * 119.99451 * 359.97438 * 18 17 15 34 34 H 1.07998 * 120.00258 * 180.25575 * 19 18 17 35 35 H 1.08004 * 119.99590 * 179.79184 * 20 19 18 36 36 H 1.08000 * 119.99479 * 179.97438 * 21 20 19 37 37 H 1.07996 * 120.00316 * 179.97438 * 22 21 20 38 38 H 1.09002 * 109.47153 * 180.02562 * 23 15 14 39 39 H 1.09001 * 109.46832 * 60.00321 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 1 2.9300 -3.5555 0.8396 12 6 3.0391 -3.6529 -1.3097 13 6 4.0338 -4.8155 -1.3106 14 6 3.2735 -6.1372 -1.1847 15 6 2.4795 -6.1464 0.1232 16 1 3.1643 -6.0395 0.9645 17 6 1.7312 -7.4484 0.2475 18 6 0.7965 -7.8023 -0.7075 19 6 0.1131 -8.9987 -0.5959 20 6 0.3575 -9.8368 0.4759 21 6 1.2888 -9.4808 1.4334 22 6 1.9752 -8.2864 1.3195 23 6 1.4850 -4.9838 0.1241 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5566 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.3545 -3.7595 -2.1511 28 1 3.5811 -2.7114 -1.3992 29 1 4.5997 -4.8088 -2.2422 30 1 4.7185 -4.7086 -0.4692 31 1 2.5888 -6.2442 -2.0261 32 1 3.9821 -6.9655 -1.1859 33 1 0.6023 -7.1453 -1.5425 34 1 -0.6141 -9.2771 -1.3442 35 1 -0.1788 -10.7700 0.5649 36 1 1.4794 -10.1354 2.2710 37 1 2.7025 -8.0080 2.0678 38 1 0.9197 -4.9900 1.0561 39 1 0.8003 -5.0907 -0.7172 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261148519.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:27 Heat of formation + Delta-G solvation = -32.459759 kcal Electronic energy + Delta-G solvation = -17254.348555 eV Core-core repulsion = 14738.112947 eV Total energy + Delta-G solvation = -2516.235607 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.76067 -38.90826 -35.45814 -33.66979 -32.52514 -31.72782 -29.75728 -28.44857 -25.13205 -24.18330 -23.41906 -22.45256 -21.08488 -20.32589 -18.40663 -17.65435 -16.60087 -16.14127 -16.06253 -15.53858 -15.20703 -14.68406 -14.57750 -14.41667 -14.08146 -13.90839 -13.55154 -13.36719 -13.10379 -12.83599 -12.48755 -12.44660 -12.17142 -12.11275 -11.86502 -11.80053 -11.57685 -11.43406 -11.10576 -10.76240 -10.59772 -10.50583 -9.75577 -9.48824 -8.17060 -6.26746 0.52747 0.56365 1.39529 1.40750 1.51688 2.41976 2.94620 3.15954 3.71012 3.84454 4.04132 4.13562 4.21952 4.31264 4.37783 4.42864 4.46223 4.64008 4.72640 4.73007 4.75733 4.77675 4.81877 5.01629 5.18501 5.20122 5.22748 5.25456 5.30644 5.34701 5.46994 5.50569 5.55434 5.63913 5.66428 5.68305 5.82052 5.87550 5.92258 6.19948 6.30493 6.89637 7.41702 8.95016 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.038034 B = 0.004725 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.003348 B = 5925.061083 C = 6258.872501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.003 4.003 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.061 0.939 9 C 0.032 3.968 10 C -0.072 4.072 11 H 0.051 0.949 12 C -0.100 4.100 13 C -0.112 4.112 14 C -0.100 4.100 15 C -0.041 4.041 16 H 0.078 0.922 17 C -0.081 4.081 18 C -0.131 4.131 19 C -0.128 4.128 20 C -0.134 4.134 21 C -0.125 4.125 22 C -0.132 4.132 23 C -0.094 4.094 24 H 0.261 0.739 25 H -0.013 1.013 26 H -0.018 1.018 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.042 0.958 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.240 -18.913 -0.547 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.200 4.200 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.566 4.566 8 H 0.080 0.920 9 C -0.006 4.006 10 C -0.091 4.091 11 H 0.070 0.930 12 C -0.138 4.138 13 C -0.149 4.149 14 C -0.137 4.137 15 C -0.060 4.060 16 H 0.096 0.904 17 C -0.081 4.081 18 C -0.149 4.149 19 C -0.145 4.145 20 C -0.152 4.152 21 C -0.142 4.142 22 C -0.150 4.150 23 C -0.131 4.131 24 H 0.070 0.930 25 H 0.005 0.995 26 H 0.001 0.999 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.135 0.865 34 H 0.154 0.846 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.148 0.852 38 H 0.061 0.939 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.103 -18.804 -0.546 19.492 hybrid contribution -0.220 1.364 0.049 1.382 sum 4.883 -17.440 -0.497 18.118 Atomic orbital electron populations 1.70114 1.07854 1.27529 1.52293 1.25970 0.95685 1.03266 0.95080 0.85506 0.78738 0.78735 0.78449 1.19822 1.20959 1.18673 1.21661 0.93431 0.92062 1.49486 0.92035 1.19035 0.94104 0.93332 0.94080 1.21039 0.96784 0.93641 0.97588 0.93024 1.21419 0.97619 0.98247 0.96520 1.21537 0.97388 0.93828 1.02173 1.21520 0.98641 0.97357 0.96182 1.20143 0.95937 0.90516 0.99385 0.90401 1.20014 0.96990 0.95835 0.95277 1.21180 0.96908 0.97408 0.99382 1.21415 0.99828 0.94273 0.99027 1.21450 0.98649 1.00527 0.94554 1.21436 0.96413 0.96674 0.99708 1.21320 1.00885 0.94990 0.97837 1.21548 0.97394 0.93740 1.00458 0.92979 0.99500 0.99940 0.93726 0.93234 0.90838 0.91835 0.92157 0.90714 0.86503 0.84560 0.83937 0.83981 0.85236 0.93888 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.40 13.29 21.45 0.28 -58.12 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 3 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.53 -30.40 8.41 25.60 0.22 -30.18 16 8 H 0.06 3.39 7.06 -2.91 -0.02 3.37 16 9 C 0.03 1.71 4.45 29.85 0.13 1.84 16 10 C -0.07 -3.01 2.14 -10.79 -0.02 -3.03 16 11 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 12 C -0.10 -3.74 5.01 30.59 0.15 -3.59 16 13 C -0.11 -3.13 5.92 30.59 0.18 -2.95 16 14 C -0.10 -2.55 5.02 30.60 0.15 -2.39 16 15 C -0.04 -1.17 2.36 -11.54 -0.03 -1.19 16 16 H 0.08 2.12 7.88 -2.39 -0.02 2.10 16 17 C -0.08 -2.12 4.78 -19.87 -0.09 -2.22 16 18 C -0.13 -3.32 8.71 22.27 0.19 -3.13 16 19 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 20 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 21 C -0.12 -2.46 10.05 22.27 0.22 -2.24 16 22 C -0.13 -3.06 9.67 22.27 0.22 -2.85 16 23 C -0.09 -3.35 4.30 30.59 0.13 -3.22 16 24 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 25 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 26 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 27 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.05 2.01 6.95 -2.38 -0.02 1.99 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.56 7.41 -2.39 -0.02 1.54 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.12 2.98 7.11 -2.91 -0.02 2.96 16 34 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.13 2.62 7.95 -2.91 -0.02 2.60 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.05 1.87 7.38 -2.39 -0.02 1.85 16 Total: -1.00 -65.63 309.85 5.67 -59.97 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.99 Total: 10.85 kcal Atomic # 6 Polarization: -62.09 SS G_CDS: 2.36 Total: -59.73 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.28 Total: -58.12 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -65.63 5.67 -59.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148519.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.509 kcal (2) G-P(sol) polarization free energy of solvation -65.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds