Wall clock time and date at job start Mon Mar 30 2020 07:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00079 * 2 1 4 4 H 1.48501 * 109.47301 * 240.00476 * 3 2 1 5 5 H 1.48503 * 109.47350 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47156 * 120.00871 * 3 2 1 7 7 C 1.37880 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00318 * 185.69772 * 7 2 1 9 9 C 1.50700 * 119.99706 * 5.69005 * 7 2 1 10 10 C 1.50700 * 108.85636 * 58.93995 * 9 7 2 11 11 C 1.38232 * 120.00354 * 187.48358 * 10 9 7 12 12 C 1.38237 * 119.99989 * 179.78687 * 11 10 9 13 13 C 1.38229 * 119.99945 * 0.45861 * 12 11 10 14 14 C 1.38241 * 120.00051 * 359.76776 * 13 12 11 15 15 C 1.38231 * 119.99726 * 0.02562 * 14 13 12 16 16 C 1.50483 * 108.88013 * 300.37699 * 9 7 2 17 17 C 1.54138 * 108.57287 * 333.51560 * 16 9 7 18 18 C 1.45542 * 112.32243 * 279.89825 * 17 16 9 19 19 C 1.54246 * 112.40741 * 61.94566 * 18 17 16 20 20 C 1.50470 * 108.51652 * 280.00397 * 19 18 17 21 21 C 1.54069 * 112.49636 * 94.15090 * 20 19 18 22 22 H 0.97004 * 119.99992 * 359.97438 * 1 2 3 23 23 H 1.07997 * 119.99997 * 359.97438 * 11 10 9 24 24 H 1.07997 * 119.99988 * 180.24737 * 12 11 10 25 25 H 1.07998 * 120.00448 * 179.78776 * 13 12 11 26 26 H 1.08000 * 119.99759 * 179.97438 * 14 13 12 27 27 H 1.08007 * 119.99701 * 179.97438 * 15 14 13 28 28 H 1.08994 * 109.62466 * 93.08081 * 16 9 7 29 29 H 1.08997 * 109.62812 * 213.66243 * 16 9 7 30 30 H 1.09008 * 108.93235 * 159.17943 * 17 16 9 31 31 H 1.08993 * 108.94308 * 40.63310 * 17 16 9 32 32 H 1.08998 * 108.89703 * 301.18697 * 18 17 16 33 33 H 1.09003 * 108.81746 * 182.64601 * 18 17 16 34 34 H 1.08995 * 109.63174 * 160.29882 * 19 18 17 35 35 H 1.08994 * 109.62564 * 39.71489 * 19 18 17 36 36 H 1.09003 * 108.87732 * 333.37871 * 20 19 18 37 37 H 1.08995 * 108.88117 * 214.93091 * 20 19 18 38 38 H 1.08999 * 108.81350 * 197.42425 * 21 20 19 39 39 H 1.08996 * 108.72436 * 79.08723 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0805 -1.1964 0.0923 9 6 1.2566 -2.4959 -0.1305 10 6 0.4841 -2.4867 -1.4244 11 6 -0.4072 -3.5054 -1.7046 12 6 -1.1190 -3.4946 -2.8896 13 6 -0.9325 -2.4700 -3.7985 14 6 -0.0377 -1.4537 -3.5204 15 6 0.6709 -1.4623 -2.3336 16 6 0.2874 -2.6170 1.0143 17 6 0.8265 -1.7969 2.2028 18 6 1.8575 -2.5088 2.9434 19 6 3.0969 -2.8159 2.0781 20 6 2.8021 -4.0256 1.2332 21 6 2.2728 -3.6534 -0.1650 22 1 -0.4850 0.8401 0.0004 23 1 -0.5497 -4.3082 -0.9964 24 1 -1.8183 -4.2884 -3.1067 25 1 -1.4860 -2.4633 -4.7259 26 1 0.1083 -0.6534 -4.2308 27 1 1.3704 -0.6684 -2.1165 28 1 -0.6846 -2.2261 0.7139 29 1 0.1910 -3.6636 1.3032 30 1 0.0016 -1.5680 2.8777 31 1 1.2431 -0.8622 1.8277 32 1 1.4431 -3.4471 3.3120 33 1 2.1631 -1.8999 3.7943 34 1 3.9522 -3.0191 2.7226 35 1 3.3142 -1.9637 1.4343 36 1 2.0564 -4.6373 1.7412 37 1 3.7162 -4.6085 1.1206 38 1 1.7940 -4.5286 -0.6041 39 1 3.1156 -3.3627 -0.7921 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261162584.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:39 Heat of formation + Delta-G solvation = 25.563260 kcal Electronic energy + Delta-G solvation = -18924.692788 eV Core-core repulsion = 16410.973247 eV Total energy + Delta-G solvation = -2513.719540 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 4.03 seconds Orbital eigenvalues (eV) -39.28826 -37.16462 -33.33461 -31.93398 -30.69716 -29.63094 -28.26489 -25.74967 -23.69746 -23.04247 -21.25533 -20.49099 -19.20242 -17.93442 -16.37272 -15.50035 -14.87606 -14.47827 -13.98538 -13.67158 -13.50517 -13.17288 -12.68687 -12.36221 -12.07766 -11.94803 -11.73725 -11.57616 -11.17619 -10.93824 -10.84098 -10.48022 -10.43448 -10.03745 -9.97229 -9.61857 -9.42824 -9.17764 -9.03750 -8.75936 -8.58389 -8.05895 -7.75710 -7.33187 -6.03157 -4.04489 2.50249 2.60563 3.25216 3.32367 3.35173 4.34183 4.98777 5.18176 5.71993 5.79847 5.82198 5.84631 5.93445 6.01788 6.24674 6.32738 6.42447 6.50808 6.57407 6.62400 6.64183 6.74560 6.80539 6.87293 6.92356 7.11889 7.14295 7.23469 7.27153 7.28295 7.38406 7.44389 7.54598 7.67914 7.74597 7.79510 8.05362 8.05836 8.18372 8.23457 8.46661 8.91920 9.47398 10.97844 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.018582 B = 0.013104 C = 0.009124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.507662 B = 2136.242053 C = 3068.022203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.067 3.933 3 Si 0.871 3.129 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.504 4.504 8 H 0.066 0.934 9 C 0.098 3.902 10 C -0.008 4.008 11 C -0.139 4.139 12 C -0.140 4.140 13 C -0.152 4.152 14 C -0.144 4.144 15 C -0.065 4.065 16 C -0.068 4.068 17 C -0.118 4.118 18 C -0.095 4.095 19 C -0.134 4.134 20 C -0.102 4.102 21 C -0.096 4.096 22 H 0.261 0.739 23 H 0.103 0.897 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.132 0.868 28 H 0.063 0.937 29 H 0.014 0.986 30 H 0.015 0.985 31 H 0.114 0.886 32 H 0.030 0.970 33 H 0.033 0.967 34 H 0.032 0.968 35 H 0.108 0.892 36 H 0.045 0.955 37 H 0.036 0.964 38 H 0.034 0.966 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.379 -4.178 -0.742 4.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.137 4.137 3 Si 0.699 3.301 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.542 4.542 8 H 0.083 0.917 9 C 0.098 3.902 10 C -0.008 4.008 11 C -0.158 4.158 12 C -0.159 4.159 13 C -0.170 4.170 14 C -0.163 4.163 15 C -0.083 4.083 16 C -0.106 4.106 17 C -0.155 4.155 18 C -0.133 4.133 19 C -0.171 4.171 20 C -0.140 4.140 21 C -0.134 4.134 22 H 0.071 0.929 23 H 0.121 0.879 24 H 0.118 0.882 25 H 0.117 0.883 26 H 0.118 0.882 27 H 0.150 0.850 28 H 0.082 0.918 29 H 0.032 0.968 30 H 0.034 0.966 31 H 0.132 0.868 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.126 0.874 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.193 -4.044 -0.732 4.280 hybrid contribution 0.160 0.938 0.023 0.952 sum 1.353 -3.106 -0.709 3.461 Atomic orbital electron populations 1.70064 1.05367 1.26448 1.47846 1.24852 0.94851 0.98387 0.95572 0.86974 0.80032 0.84194 0.78930 1.20129 1.21294 1.20101 1.21010 0.93051 0.89841 1.50321 0.91661 1.17090 0.91026 0.93287 0.88818 1.20382 0.93393 0.91293 0.95743 1.20956 0.98571 0.99554 0.96679 1.20797 1.00781 0.98740 0.95551 1.20748 1.00727 0.96391 0.99106 1.21081 0.98738 0.98279 0.98157 1.21386 0.97853 0.97936 0.91135 1.21022 0.99604 0.94712 0.95245 1.20585 0.95669 1.03513 0.95687 1.20360 0.96854 0.98612 0.97437 1.21676 0.96005 1.00890 0.98481 1.21170 0.98597 0.97424 0.96761 1.21944 0.98776 0.97378 0.95272 0.92851 0.87915 0.88211 0.88326 0.88225 0.85025 0.91850 0.96781 0.96602 0.86849 0.95148 0.94833 0.94951 0.87434 0.93665 0.94502 0.94707 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.77 9.74 55.43 0.54 -21.23 16 2 C 0.07 1.60 1.58 -17.82 -0.03 1.57 16 3 Si 0.87 19.34 29.54 -169.99 -5.02 14.32 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.50 -11.78 3.54 -34.44 -0.12 -11.90 16 8 H 0.07 1.54 5.92 -52.49 -0.31 1.23 16 9 C 0.10 2.16 0.34 -157.51 -0.05 2.11 16 10 C -0.01 -0.17 3.79 -104.63 -0.40 -0.57 16 11 C -0.14 -2.91 8.49 -39.58 -0.34 -3.24 16 12 C -0.14 -2.70 10.05 -39.59 -0.40 -3.10 16 13 C -0.15 -2.90 10.05 -39.58 -0.40 -3.29 16 14 C -0.14 -2.96 10.05 -39.58 -0.40 -3.36 16 15 C -0.07 -1.49 7.80 -39.59 -0.31 -1.80 16 16 C -0.07 -1.52 3.59 -27.39 -0.10 -1.62 16 17 C -0.12 -2.59 4.72 -29.65 -0.14 -2.73 16 18 C -0.10 -1.84 5.26 -29.60 -0.16 -2.00 16 19 C -0.13 -2.51 5.61 -27.34 -0.15 -2.67 16 20 C -0.10 -1.86 5.31 -27.44 -0.15 -2.00 16 21 C -0.10 -1.92 4.76 -25.61 -0.12 -2.04 16 22 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 23 H 0.10 2.01 7.87 -52.49 -0.41 1.60 16 24 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 25 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 26 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 27 H 0.13 3.17 5.40 -52.48 -0.28 2.88 16 28 H 0.06 1.58 6.85 -51.93 -0.36 1.22 16 29 H 0.01 0.29 6.97 -51.93 -0.36 -0.07 16 30 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.11 2.73 3.97 -51.93 -0.21 2.53 16 32 H 0.03 0.56 7.47 -51.93 -0.39 0.17 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.11 2.24 4.16 -51.93 -0.22 2.02 16 36 H 0.04 0.81 6.63 -51.93 -0.34 0.47 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.03 0.66 7.44 -51.93 -0.39 0.28 16 39 H 0.05 0.98 7.95 -51.93 -0.41 0.56 16 LS Contribution 281.22 15.07 4.24 4.24 Total: -1.00 -24.28 281.22 -9.27 -33.55 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.77 Total: 5.76 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: -3.25 Total: -36.64 kcal Atomic # 7 Polarization: -21.77 SS G_CDS: 0.54 Total: -21.23 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -24.28 -9.27 -33.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261162584.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.113 kcal (2) G-P(sol) polarization free energy of solvation -24.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.04 seconds