Wall clock time and date at job start Mon Mar 30 2020 07:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00079 * 2 1 4 4 H 1.48501 * 109.47301 * 240.00476 * 3 2 1 5 5 H 1.48503 * 109.47350 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47156 * 120.00871 * 3 2 1 7 7 C 1.37880 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00318 * 185.69772 * 7 2 1 9 9 C 1.50700 * 119.99706 * 5.69005 * 7 2 1 10 10 C 1.50700 * 108.85636 * 58.93995 * 9 7 2 11 11 C 1.38232 * 120.00354 * 187.48358 * 10 9 7 12 12 C 1.38237 * 119.99989 * 179.78687 * 11 10 9 13 13 C 1.38229 * 119.99945 * 0.45861 * 12 11 10 14 14 C 1.38241 * 120.00051 * 359.76776 * 13 12 11 15 15 C 1.38231 * 119.99726 * 0.02562 * 14 13 12 16 16 C 1.50483 * 108.88013 * 300.37699 * 9 7 2 17 17 C 1.54138 * 108.57287 * 333.51560 * 16 9 7 18 18 C 1.45542 * 112.32243 * 279.89825 * 17 16 9 19 19 C 1.54246 * 112.40741 * 61.94566 * 18 17 16 20 20 C 1.50470 * 108.51652 * 280.00397 * 19 18 17 21 21 C 1.54069 * 112.49636 * 94.15090 * 20 19 18 22 22 H 0.97004 * 119.99992 * 359.97438 * 1 2 3 23 23 H 1.07997 * 119.99997 * 359.97438 * 11 10 9 24 24 H 1.07997 * 119.99988 * 180.24737 * 12 11 10 25 25 H 1.07998 * 120.00448 * 179.78776 * 13 12 11 26 26 H 1.08000 * 119.99759 * 179.97438 * 14 13 12 27 27 H 1.08007 * 119.99701 * 179.97438 * 15 14 13 28 28 H 1.08994 * 109.62466 * 93.08081 * 16 9 7 29 29 H 1.08997 * 109.62812 * 213.66243 * 16 9 7 30 30 H 1.09008 * 108.93235 * 159.17943 * 17 16 9 31 31 H 1.08993 * 108.94308 * 40.63310 * 17 16 9 32 32 H 1.08998 * 108.89703 * 301.18697 * 18 17 16 33 33 H 1.09003 * 108.81746 * 182.64601 * 18 17 16 34 34 H 1.08995 * 109.63174 * 160.29882 * 19 18 17 35 35 H 1.08994 * 109.62564 * 39.71489 * 19 18 17 36 36 H 1.09003 * 108.87732 * 333.37871 * 20 19 18 37 37 H 1.08995 * 108.88117 * 214.93091 * 20 19 18 38 38 H 1.08999 * 108.81350 * 197.42425 * 21 20 19 39 39 H 1.08996 * 108.72436 * 79.08723 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0805 -1.1964 0.0923 9 6 1.2566 -2.4959 -0.1305 10 6 0.4841 -2.4867 -1.4244 11 6 -0.4072 -3.5054 -1.7046 12 6 -1.1190 -3.4946 -2.8896 13 6 -0.9325 -2.4700 -3.7985 14 6 -0.0377 -1.4537 -3.5204 15 6 0.6709 -1.4623 -2.3336 16 6 0.2874 -2.6170 1.0143 17 6 0.8265 -1.7969 2.2028 18 6 1.8575 -2.5088 2.9434 19 6 3.0969 -2.8159 2.0781 20 6 2.8021 -4.0256 1.2332 21 6 2.2728 -3.6534 -0.1650 22 1 -0.4850 0.8401 0.0004 23 1 -0.5497 -4.3082 -0.9964 24 1 -1.8183 -4.2884 -3.1067 25 1 -1.4860 -2.4633 -4.7259 26 1 0.1083 -0.6534 -4.2308 27 1 1.3704 -0.6684 -2.1165 28 1 -0.6846 -2.2261 0.7139 29 1 0.1910 -3.6636 1.3032 30 1 0.0016 -1.5680 2.8777 31 1 1.2431 -0.8622 1.8277 32 1 1.4431 -3.4471 3.3120 33 1 2.1631 -1.8999 3.7943 34 1 3.9522 -3.0191 2.7226 35 1 3.3142 -1.9637 1.4343 36 1 2.0564 -4.6373 1.7412 37 1 3.7162 -4.6085 1.1206 38 1 1.7940 -4.5286 -0.6041 39 1 3.1156 -3.3627 -0.7921 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261162584.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:39 Heat of formation + Delta-G solvation = 16.781016 kcal Electronic energy + Delta-G solvation = -18925.073614 eV Core-core repulsion = 16410.973247 eV Total energy + Delta-G solvation = -2514.100367 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.94477 -38.74891 -35.01941 -33.60746 -32.36062 -31.24671 -29.87071 -27.55102 -25.32486 -24.68702 -22.86064 -22.08054 -20.84816 -19.60916 -18.06225 -17.19079 -16.61282 -16.13136 -15.63037 -15.31872 -15.08628 -14.74789 -14.36700 -13.95948 -13.66136 -13.59900 -13.44498 -13.20268 -12.84288 -12.68361 -12.53032 -12.21404 -12.06631 -11.72198 -11.59294 -11.20256 -11.03791 -10.80488 -10.73785 -10.44046 -10.33143 -9.86928 -9.37597 -8.96431 -7.89690 -5.91863 0.89394 1.02181 1.43954 1.49612 1.51318 2.50236 3.33428 3.36888 4.18665 4.25500 4.33637 4.39173 4.40961 4.53420 4.64860 4.75097 4.82547 4.93382 4.94056 5.01552 5.10049 5.15246 5.18999 5.30620 5.36763 5.42964 5.54036 5.62821 5.65222 5.68447 5.77143 5.81424 5.93072 5.95089 6.01735 6.09181 6.26641 6.34237 6.41627 6.59726 6.67363 7.10631 7.61138 9.09808 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.018582 B = 0.013104 C = 0.009124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.507662 B = 2136.242053 C = 3068.022203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.043 3.957 3 Si 0.909 3.091 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.495 4.495 8 H 0.060 0.940 9 C 0.094 3.906 10 C -0.028 4.028 11 C -0.152 4.152 12 C -0.139 4.139 13 C -0.151 4.151 14 C -0.153 4.153 15 C -0.091 4.091 16 C -0.057 4.057 17 C -0.114 4.114 18 C -0.095 4.095 19 C -0.131 4.131 20 C -0.099 4.099 21 C -0.094 4.094 22 H 0.252 0.748 23 H 0.111 0.889 24 H 0.133 0.867 25 H 0.133 0.867 26 H 0.116 0.884 27 H 0.109 0.891 28 H 0.031 0.969 29 H 0.024 0.976 30 H 0.006 0.994 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.041 0.959 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.566 -5.672 -0.999 5.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.158 4.158 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.200 1.200 7 C -0.533 4.533 8 H 0.078 0.922 9 C 0.094 3.906 10 C -0.029 4.029 11 C -0.170 4.170 12 C -0.156 4.156 13 C -0.168 4.168 14 C -0.171 4.171 15 C -0.109 4.109 16 C -0.095 4.095 17 C -0.150 4.150 18 C -0.133 4.133 19 C -0.168 4.168 20 C -0.137 4.137 21 C -0.131 4.131 22 H 0.062 0.938 23 H 0.129 0.871 24 H 0.151 0.849 25 H 0.150 0.850 26 H 0.134 0.866 27 H 0.127 0.873 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.025 0.975 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.400 -5.541 -0.989 5.800 hybrid contribution 0.085 1.389 0.063 1.393 sum 1.486 -4.152 -0.926 4.506 Atomic orbital electron populations 1.70176 1.06182 1.25931 1.49664 1.25146 0.95030 0.99883 0.95715 0.86389 0.79039 0.82236 0.78692 1.20186 1.22251 1.19987 1.21153 0.92799 0.90597 1.48795 0.92199 1.17117 0.91292 0.93452 0.88738 1.20485 0.94405 0.92068 0.95907 1.21135 0.98633 0.99452 0.97778 1.21199 1.00408 0.99431 0.94605 1.21127 1.00000 0.95427 1.00293 1.21335 0.98710 0.99370 0.97723 1.21310 0.98919 0.97968 0.92730 1.20875 0.98079 0.94963 0.95570 1.20509 0.96087 1.02882 0.95570 1.20323 0.96403 0.99049 0.97494 1.21612 0.96475 1.00259 0.98483 1.21151 0.99744 0.97408 0.95366 1.21899 0.97937 0.96716 0.96596 0.93831 0.87063 0.84919 0.84957 0.86628 0.87294 0.95019 0.95742 0.97517 0.89118 0.93797 0.93866 0.92559 0.89692 0.93088 0.92230 0.94047 0.94118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.85 9.74 21.45 0.21 -45.64 16 2 C 0.04 2.11 1.58 84.66 0.13 2.25 16 3 Si 0.91 40.45 29.54 68.60 2.03 42.48 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.50 -23.42 3.54 25.60 0.09 -23.33 16 8 H 0.06 2.86 5.92 -2.91 -0.02 2.84 16 9 C 0.09 4.15 0.34 -54.13 -0.02 4.13 16 10 C -0.03 -1.27 3.79 -19.87 -0.08 -1.34 16 11 C -0.15 -6.15 8.49 22.27 0.19 -5.96 16 12 C -0.14 -4.97 10.05 22.27 0.22 -4.75 16 13 C -0.15 -5.37 10.05 22.27 0.22 -5.15 16 14 C -0.15 -6.16 10.05 22.27 0.22 -5.93 16 15 C -0.09 -4.19 7.80 22.27 0.17 -4.02 16 16 C -0.06 -2.55 3.59 30.16 0.11 -2.44 16 17 C -0.11 -4.97 4.72 28.70 0.14 -4.84 16 18 C -0.10 -3.53 5.26 28.74 0.15 -3.38 16 19 C -0.13 -4.66 5.61 30.20 0.17 -4.49 16 20 C -0.10 -3.36 5.31 30.14 0.16 -3.20 16 21 C -0.09 -3.63 4.76 31.32 0.15 -3.48 16 22 H 0.25 13.16 8.31 -92.71 -0.77 12.39 16 23 H 0.11 4.20 7.87 -2.91 -0.02 4.18 16 24 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 25 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 26 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 27 H 0.11 5.41 5.40 -2.91 -0.02 5.39 16 28 H 0.03 1.59 6.85 -2.39 -0.02 1.58 16 29 H 0.02 1.01 6.97 -2.39 -0.02 0.99 16 30 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 31 H 0.09 4.43 3.97 -2.39 -0.01 4.42 16 32 H 0.04 1.51 7.47 -2.39 -0.02 1.49 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 3.45 4.16 -2.39 -0.01 3.44 16 36 H 0.05 1.67 6.63 -2.39 -0.02 1.66 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.04 1.52 7.44 -2.39 -0.02 1.50 16 39 H 0.04 1.60 7.95 -2.39 -0.02 1.59 16 Total: -1.00 -51.74 281.22 5.30 -46.44 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 1.02 Total: 22.66 kcal Atomic # 6 Polarization: -67.97 SS G_CDS: 2.04 Total: -65.94 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.21 Total: -45.64 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -51.74 5.30 -46.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261162584.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.223 kcal (2) G-P(sol) polarization free energy of solvation -51.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds