Wall clock time and date at job start Mon Mar 30 2020 07:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00025 * 2 1 4 4 H 1.48504 * 109.46969 * 240.00555 * 3 2 1 5 5 H 1.48504 * 109.46812 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46962 * 120.00381 * 3 2 1 7 7 C 1.37879 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00095 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00125 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47406 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.46947 * 303.82964 * 10 9 7 12 12 C 1.53001 * 109.47053 * 63.82670 * 10 9 7 13 13 C 1.53002 * 109.47113 * 60.00150 * 12 10 9 14 14 C 1.52999 * 109.47014 * 59.99803 * 13 12 10 15 15 C 1.53001 * 109.47342 * 300.00057 * 14 13 12 16 16 C 1.52999 * 109.47171 * 183.82927 * 10 9 7 17 17 H 1.09001 * 109.46959 * 180.02562 * 16 10 9 18 18 C 1.50699 * 109.47093 * 60.00215 * 16 10 9 19 19 C 1.38229 * 120.00011 * 99.51126 * 18 16 10 20 20 C 1.38239 * 119.99895 * 179.73948 * 19 18 16 21 21 C 1.38229 * 119.99704 * 0.53565 * 20 19 18 22 22 C 1.38236 * 120.00550 * 359.73794 * 21 20 19 23 23 C 1.38231 * 119.99667 * 279.77977 * 18 16 10 24 24 H 0.96996 * 120.00169 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46531 * 60.00255 * 9 7 2 26 26 H 1.09004 * 109.47214 * 300.00820 * 9 7 2 27 27 H 1.08993 * 109.47505 * 300.00512 * 12 10 9 28 28 H 1.08998 * 109.47009 * 179.97438 * 12 10 9 29 29 H 1.09007 * 109.47236 * 300.00372 * 13 12 10 30 30 H 1.08998 * 109.47671 * 180.02562 * 13 12 10 31 31 H 1.09006 * 109.47243 * 180.02562 * 14 13 12 32 32 H 1.08998 * 109.47228 * 60.00118 * 14 13 12 33 33 H 1.09005 * 109.47241 * 179.97438 * 15 14 13 34 34 H 1.08998 * 109.47009 * 300.00195 * 15 14 13 35 35 H 1.08000 * 120.00250 * 0.02562 * 19 18 16 36 36 H 1.08004 * 119.99968 * 180.29488 * 20 19 18 37 37 H 1.08004 * 120.00138 * 179.77067 * 21 20 19 38 38 H 1.07992 * 120.00444 * 180.02562 * 22 21 20 39 39 H 1.07997 * 120.00095 * 0.02562 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9162 -3.5664 -0.8542 12 6 3.0603 -3.6362 1.2941 13 6 2.1185 -3.7705 2.4924 14 6 1.3560 -5.0934 2.3961 15 6 0.5410 -5.1192 1.1015 16 6 1.4828 -4.9850 -0.0969 17 1 2.1911 -5.8135 -0.0964 18 6 0.6801 -5.0104 -1.3720 19 6 1.1595 -5.6884 -2.4771 20 6 0.4207 -5.7163 -3.6452 21 6 -0.7924 -5.0568 -3.7115 22 6 -1.2692 -4.3740 -2.6082 23 6 -0.5330 -4.3510 -1.4383 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 3.6035 -2.6938 1.3628 28 1 3.7683 -4.4650 1.2943 29 1 1.4101 -2.9420 2.4924 30 1 2.6990 -3.7516 3.4148 31 1 0.6847 -5.1888 3.2496 32 1 2.0643 -5.9219 2.3961 33 1 -0.0020 -6.0619 1.0326 34 1 -0.1673 -4.2907 1.1015 35 1 2.1091 -6.2003 -2.4266 36 1 0.7930 -6.2500 -4.5071 37 1 -1.3679 -5.0754 -4.6252 38 1 -2.2171 -3.8591 -2.6599 39 1 -0.9053 -3.8173 -0.5764 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261170882.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:03 Heat of formation + Delta-G solvation = -21.685015 kcal Electronic energy + Delta-G solvation = -18093.964959 eV Core-core repulsion = 15578.196579 eV Total energy + Delta-G solvation = -2515.768379 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.05762 -38.84786 -35.00301 -33.52068 -32.40884 -31.74268 -29.64460 -28.61035 -25.18765 -24.09117 -23.60643 -22.29561 -21.65046 -19.23331 -18.31131 -17.68003 -16.46982 -16.34886 -15.93865 -15.75529 -15.11648 -14.93997 -14.46122 -14.15532 -13.97350 -13.79745 -13.46323 -13.23482 -13.01111 -12.83741 -12.65646 -12.36467 -12.31411 -12.01801 -11.92689 -11.63835 -11.45166 -11.23329 -10.79641 -10.69583 -10.57558 -10.35799 -9.63952 -9.37023 -8.11665 -6.17550 0.59875 0.63682 1.37607 1.39264 1.46529 2.43204 3.00811 3.21761 3.82681 3.91651 4.08229 4.18901 4.24893 4.33923 4.43485 4.51115 4.60542 4.69774 4.76023 4.78006 4.80360 4.84173 4.86313 5.05598 5.22294 5.24173 5.28416 5.35642 5.38394 5.42431 5.45565 5.59293 5.64420 5.69418 5.74537 5.78646 5.95369 5.99564 6.05254 6.27185 6.40852 6.99239 7.48033 8.99074 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.017866 B = 0.008952 C = 0.006834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.805658 B = 3127.062666 C = 4096.067550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.947 3.053 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.526 4.526 8 H 0.051 0.949 9 C 0.034 3.966 10 C -0.070 4.070 11 H 0.040 0.960 12 C -0.098 4.098 13 C -0.118 4.118 14 C -0.107 4.107 15 C -0.110 4.110 16 C -0.038 4.038 17 H 0.088 0.912 18 C -0.079 4.079 19 C -0.130 4.130 20 C -0.127 4.127 21 C -0.134 4.134 22 C -0.140 4.140 23 C -0.118 4.118 24 H 0.258 0.742 25 H 0.002 0.998 26 H 0.004 0.996 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.043 0.957 35 H 0.137 0.863 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.121 0.879 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.753 -13.127 -1.678 13.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.773 3.227 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.564 4.564 8 H 0.069 0.931 9 C -0.003 4.003 10 C -0.088 4.088 11 H 0.059 0.941 12 C -0.135 4.135 13 C -0.155 4.155 14 C -0.144 4.144 15 C -0.147 4.147 16 C -0.056 4.056 17 H 0.107 0.893 18 C -0.079 4.079 19 C -0.148 4.148 20 C -0.144 4.144 21 C -0.151 4.151 22 C -0.158 4.158 23 C -0.136 4.136 24 H 0.067 0.933 25 H 0.020 0.980 26 H 0.022 0.978 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.155 0.845 36 H 0.166 0.834 37 H 0.160 0.840 38 H 0.139 0.861 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.612 -13.011 -1.670 13.216 hybrid contribution 0.011 1.649 -0.008 1.649 sum 1.622 -11.362 -1.678 11.599 Atomic orbital electron populations 1.70076 1.07353 1.27080 1.52542 1.25780 0.95603 1.02457 0.95604 0.85773 0.78504 0.79547 0.78861 1.19771 1.21134 1.19441 1.21679 0.93043 0.92739 1.48938 0.93093 1.19202 0.94079 0.91523 0.95477 1.21032 0.96704 0.94234 0.96837 0.94120 1.21379 0.97339 1.00593 0.94239 1.21494 0.98479 0.97770 0.97793 1.21464 0.98859 0.97283 0.96780 1.21592 0.97787 1.00964 0.94403 1.20204 0.96187 0.97827 0.91359 0.89345 1.20054 0.94528 0.96841 0.96509 1.21298 1.00463 1.00151 0.92859 1.21409 0.94868 0.99889 0.98265 1.21366 0.97200 0.98081 0.98491 1.21339 1.00519 1.00118 0.93837 1.21162 0.95655 0.98267 0.98500 0.93296 0.97972 0.97820 0.93707 0.91213 0.94390 0.91478 0.91522 0.90324 0.91283 0.93840 0.84471 0.83444 0.84029 0.86086 0.88090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.95 45.40 29.54 68.60 2.03 47.43 16 4 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.53 -29.96 8.40 25.60 0.21 -29.75 16 8 H 0.05 2.84 6.98 -2.91 -0.02 2.82 16 9 C 0.03 1.74 2.89 29.85 0.09 1.83 16 10 C -0.07 -2.84 2.15 -10.80 -0.02 -2.87 16 11 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 12 C -0.10 -3.59 5.25 30.60 0.16 -3.43 16 13 C -0.12 -4.07 5.65 30.59 0.17 -3.90 16 14 C -0.11 -3.06 5.92 30.59 0.18 -2.88 16 15 C -0.11 -3.58 4.46 30.60 0.14 -3.44 16 16 C -0.04 -1.27 2.21 -11.54 -0.03 -1.30 16 17 H 0.09 2.54 8.01 -2.39 -0.02 2.52 16 18 C -0.08 -2.80 4.58 -19.87 -0.09 -2.89 16 19 C -0.13 -3.89 9.67 22.27 0.22 -3.67 16 20 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 21 C -0.13 -3.83 10.05 22.27 0.22 -3.60 16 22 C -0.14 -4.81 10.05 22.27 0.22 -4.58 16 23 C -0.12 -4.56 6.91 22.27 0.15 -4.41 16 24 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 25 H 0.00 0.12 5.29 -2.38 -0.01 0.10 16 26 H 0.00 0.20 4.82 -2.38 -0.01 0.19 16 27 H 0.04 1.82 6.87 -2.39 -0.02 1.81 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.04 1.61 6.35 -2.38 -0.02 1.59 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.04 1.69 4.98 -2.39 -0.01 1.68 16 35 H 0.14 3.38 8.04 -2.91 -0.02 3.36 16 36 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 37 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 38 H 0.12 3.85 8.06 -2.91 -0.02 3.82 16 39 H 0.10 4.39 5.68 -2.91 -0.02 4.38 16 Total: -1.00 -64.90 296.17 5.64 -59.25 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 1.02 Total: 17.46 kcal Atomic # 6 Polarization: -69.77 SS G_CDS: 2.32 Total: -67.45 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.28 Total: -56.68 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -64.90 5.64 -59.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261170882.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.567 kcal (2) G-P(sol) polarization free energy of solvation -64.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds