Wall clock time and date at job start Mon Mar 30 2020 07:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00187 * 2 1 4 4 H 1.48499 * 109.47366 * 240.00248 * 3 2 1 5 5 H 1.48501 * 109.47047 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46987 * 120.00052 * 3 2 1 7 7 C 1.37871 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00466 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47337 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.47514 * 305.00536 * 10 9 7 12 12 C 1.53002 * 109.46637 * 65.00407 * 10 9 7 13 13 C 1.52997 * 109.46817 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47452 * 300.00239 * 13 12 10 15 15 C 1.52999 * 109.47159 * 59.99536 * 14 13 12 16 16 C 1.52997 * 109.47317 * 300.00546 * 15 14 13 17 17 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 18 18 C 1.50699 * 109.47078 * 179.97438 * 16 15 14 19 19 C 1.38237 * 120.00001 * 299.72693 * 18 16 15 20 20 C 1.38237 * 120.00164 * 179.76476 * 19 18 16 21 21 C 1.38233 * 119.99655 * 0.50733 * 20 19 18 22 22 C 1.38237 * 120.00241 * 359.74632 * 21 20 19 23 23 C 1.38233 * 119.99957 * 119.99904 * 18 16 15 24 24 H 0.97009 * 119.99787 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.46812 * 60.00327 * 9 7 2 26 26 H 1.09000 * 109.47041 * 300.00717 * 9 7 2 27 27 H 1.09002 * 109.47075 * 60.00414 * 12 10 9 28 28 H 1.08993 * 109.47662 * 299.99908 * 12 10 9 29 29 H 1.09001 * 109.47289 * 180.02562 * 13 12 10 30 30 H 1.09002 * 109.47153 * 60.00231 * 13 12 10 31 31 H 1.09002 * 109.46935 * 300.00125 * 14 13 12 32 32 H 1.09000 * 109.47360 * 180.02562 * 14 13 12 33 33 H 1.08996 * 109.46929 * 179.97438 * 15 14 13 34 34 H 1.09002 * 109.46716 * 60.00455 * 15 14 13 35 35 H 1.08007 * 119.99774 * 359.97438 * 19 18 16 36 36 H 1.08001 * 120.00097 * 180.22474 * 20 19 18 37 37 H 1.07999 * 120.00012 * 179.71996 * 21 20 19 38 38 H 1.07997 * 119.99822 * 179.97438 * 22 21 20 39 39 H 1.07991 * 120.00142 * 0.02562 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 1 2.9288 -3.5548 -0.8440 12 6 3.0409 -3.6541 1.3050 13 6 4.0347 -4.8174 1.3040 14 6 3.2733 -6.1386 1.1785 15 6 2.4776 -6.1465 -0.1283 16 6 1.4838 -4.9832 -0.1273 17 1 0.8002 -5.0900 0.7149 18 6 0.7005 -4.9906 -1.4147 19 6 1.3574 -4.8616 -2.6242 20 6 0.6393 -4.8733 -3.8054 21 6 -0.7365 -5.0035 -3.7765 22 6 -1.3939 -5.1273 -2.5668 23 6 -0.6754 -5.1209 -1.3859 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6246 -2.5570 0.8896 27 1 2.3573 -3.7614 2.1472 28 1 3.5830 -2.7128 1.3947 29 1 4.6013 -4.8120 2.2352 30 1 4.7183 -4.7105 0.4618 31 1 2.5897 -6.2454 2.0207 32 1 3.9813 -6.9674 1.1782 33 1 1.9356 -7.0879 -0.2179 34 1 3.1612 -6.0396 -0.9705 35 1 2.4319 -4.7550 -2.6464 36 1 1.1529 -4.7761 -4.7505 37 1 -1.2980 -5.0081 -4.6991 38 1 -2.4689 -5.2286 -2.5443 39 1 -1.1890 -5.2169 -0.4408 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261170887.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:11 Heat of formation + Delta-G solvation = -16.059068 kcal Electronic energy + Delta-G solvation = -17840.117584 eV Core-core repulsion = 15324.593164 eV Total energy + Delta-G solvation = -2515.524420 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.52092 -37.41716 -33.29066 -32.23860 -30.96796 -30.44015 -28.42955 -26.51453 -23.23374 -22.88366 -22.13988 -20.52637 -20.13671 -18.74117 -16.52823 -16.12075 -15.00845 -14.72089 -14.38771 -14.06562 -13.74109 -13.37104 -13.14901 -12.96407 -12.82262 -12.07565 -11.87306 -11.75370 -11.52480 -11.24076 -10.89568 -10.80320 -10.69937 -10.65576 -10.39356 -10.26728 -10.01906 -9.70727 -9.48808 -8.96590 -8.84272 -8.43477 -8.27852 -8.05462 -5.91586 -3.92530 1.87099 1.88435 3.36370 3.40953 3.43105 4.27313 4.51443 5.03356 5.17873 5.29354 5.36308 5.38670 5.44028 5.51647 5.63320 5.73750 5.87455 5.96165 6.00300 6.05036 6.07438 6.12216 6.15888 6.27932 6.45164 6.47464 6.55127 6.60128 6.67499 6.71357 6.93928 6.95319 7.07185 7.12521 7.22538 7.29770 7.49600 7.78753 7.95415 8.10028 8.52563 9.13936 9.70111 11.19544 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.008848 C = 0.006373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.674433 B = 3163.870640 C = 4392.333069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.030 3.970 10 C -0.069 4.069 11 H 0.056 0.944 12 C -0.105 4.105 13 C -0.121 4.121 14 C -0.116 4.116 15 C -0.108 4.108 16 C -0.048 4.048 17 H 0.071 0.929 18 C -0.048 4.048 19 C -0.111 4.111 20 C -0.122 4.122 21 C -0.135 4.135 22 C -0.120 4.120 23 C -0.115 4.115 24 H 0.259 0.741 25 H 0.020 0.980 26 H 0.011 0.989 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.357 -12.583 -2.415 13.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.714 3.286 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.071 0.929 9 C -0.007 4.007 10 C -0.088 4.088 11 H 0.075 0.925 12 C -0.143 4.143 13 C -0.159 4.159 14 C -0.153 4.153 15 C -0.145 4.145 16 C -0.067 4.067 17 H 0.089 0.911 18 C -0.048 4.048 19 C -0.129 4.129 20 C -0.140 4.140 21 C -0.153 4.153 22 C -0.138 4.138 23 C -0.133 4.133 24 H 0.068 0.932 25 H 0.039 0.961 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.202 -12.461 -2.411 12.882 hybrid contribution 0.337 1.164 -0.046 1.213 sum 2.539 -11.297 -2.457 11.837 Atomic orbital electron populations 1.69962 1.05955 1.26381 1.51111 1.24992 0.94766 0.98970 0.95658 0.86761 0.79657 0.83674 0.78507 1.20372 1.21412 1.20363 1.21218 0.92816 0.91102 1.50023 0.92853 1.19127 0.93579 0.90844 0.97183 1.21240 0.97468 0.93549 0.96519 0.92521 1.21516 0.97316 0.97362 0.98066 1.21615 0.98263 0.95342 1.00670 1.21513 0.98664 0.97365 0.97792 1.21575 0.97657 0.97600 0.97670 1.20352 0.96132 0.96255 0.93912 0.91102 1.19846 0.93605 0.96399 0.94995 1.20935 0.99811 1.00089 0.92032 1.21033 0.94302 1.00763 0.97864 1.20980 0.94604 1.02198 0.97528 1.21027 0.99306 1.00754 0.92741 1.21031 0.93747 1.00588 0.97934 0.93163 0.96125 0.97015 0.92878 0.91124 0.93003 0.92574 0.92328 0.92896 0.92795 0.92180 0.86487 0.86777 0.86919 0.86750 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.51 -14.44 8.41 -34.44 -0.29 -14.73 16 8 H 0.05 1.46 7.05 -52.48 -0.37 1.09 16 9 C 0.03 0.76 4.29 -27.88 -0.12 0.64 16 10 C -0.07 -1.40 1.48 -90.62 -0.13 -1.53 16 11 H 0.06 1.18 7.37 -51.93 -0.38 0.80 16 12 C -0.11 -1.95 5.01 -26.73 -0.13 -2.08 16 13 C -0.12 -1.80 5.92 -26.73 -0.16 -1.96 16 14 C -0.12 -1.55 5.92 -26.73 -0.16 -1.71 16 15 C -0.11 -1.54 5.02 -26.73 -0.13 -1.68 16 16 C -0.05 -0.83 1.90 -91.77 -0.17 -1.00 16 17 H 0.07 1.25 7.88 -51.93 -0.41 0.84 16 18 C -0.05 -0.86 3.43 -104.62 -0.36 -1.22 16 19 C -0.11 -1.88 8.71 -39.58 -0.34 -2.23 16 20 C -0.12 -1.90 10.05 -39.58 -0.40 -2.30 16 21 C -0.14 -2.05 10.05 -39.58 -0.40 -2.44 16 22 C -0.12 -1.89 10.05 -39.58 -0.40 -2.29 16 23 C -0.11 -1.97 9.67 -39.58 -0.38 -2.36 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.02 0.58 7.04 -51.92 -0.37 0.21 16 26 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.43 6.95 -51.93 -0.36 1.07 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.85 7.40 -51.93 -0.38 0.46 16 35 H 0.12 1.88 7.10 -52.48 -0.37 1.50 16 36 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.12 1.86 7.95 -52.49 -0.42 1.44 16 LS Contribution 307.74 15.07 4.64 4.64 Total: -1.00 -30.24 307.74 -9.75 -39.99 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.43 Total: 0.27 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: -3.68 Total: -35.34 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.74 Total: -26.49 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.24 -9.75 -39.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261170887.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.931 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds