Wall clock time and date at job start Mon Mar 30 2020 07:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00187 * 2 1 4 4 H 1.48499 * 109.47366 * 240.00248 * 3 2 1 5 5 H 1.48501 * 109.47047 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46987 * 120.00052 * 3 2 1 7 7 C 1.37871 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00466 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47337 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.47514 * 305.00536 * 10 9 7 12 12 C 1.53002 * 109.46637 * 65.00407 * 10 9 7 13 13 C 1.52997 * 109.46817 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47452 * 300.00239 * 13 12 10 15 15 C 1.52999 * 109.47159 * 59.99536 * 14 13 12 16 16 C 1.52997 * 109.47317 * 300.00546 * 15 14 13 17 17 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 18 18 C 1.50699 * 109.47078 * 179.97438 * 16 15 14 19 19 C 1.38237 * 120.00001 * 299.72693 * 18 16 15 20 20 C 1.38237 * 120.00164 * 179.76476 * 19 18 16 21 21 C 1.38233 * 119.99655 * 0.50733 * 20 19 18 22 22 C 1.38237 * 120.00241 * 359.74632 * 21 20 19 23 23 C 1.38233 * 119.99957 * 119.99904 * 18 16 15 24 24 H 0.97009 * 119.99787 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.46812 * 60.00327 * 9 7 2 26 26 H 1.09000 * 109.47041 * 300.00717 * 9 7 2 27 27 H 1.09002 * 109.47075 * 60.00414 * 12 10 9 28 28 H 1.08993 * 109.47662 * 299.99908 * 12 10 9 29 29 H 1.09001 * 109.47289 * 180.02562 * 13 12 10 30 30 H 1.09002 * 109.47153 * 60.00231 * 13 12 10 31 31 H 1.09002 * 109.46935 * 300.00125 * 14 13 12 32 32 H 1.09000 * 109.47360 * 180.02562 * 14 13 12 33 33 H 1.08996 * 109.46929 * 179.97438 * 15 14 13 34 34 H 1.09002 * 109.46716 * 60.00455 * 15 14 13 35 35 H 1.08007 * 119.99774 * 359.97438 * 19 18 16 36 36 H 1.08001 * 120.00097 * 180.22474 * 20 19 18 37 37 H 1.07999 * 120.00012 * 179.71996 * 21 20 19 38 38 H 1.07997 * 119.99822 * 179.97438 * 22 21 20 39 39 H 1.07991 * 120.00142 * 0.02562 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 1 2.9288 -3.5548 -0.8440 12 6 3.0409 -3.6541 1.3050 13 6 4.0347 -4.8174 1.3040 14 6 3.2733 -6.1386 1.1785 15 6 2.4776 -6.1465 -0.1283 16 6 1.4838 -4.9832 -0.1273 17 1 0.8002 -5.0900 0.7149 18 6 0.7005 -4.9906 -1.4147 19 6 1.3574 -4.8616 -2.6242 20 6 0.6393 -4.8733 -3.8054 21 6 -0.7365 -5.0035 -3.7765 22 6 -1.3939 -5.1273 -2.5668 23 6 -0.6754 -5.1209 -1.3859 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6246 -2.5570 0.8896 27 1 2.3573 -3.7614 2.1472 28 1 3.5830 -2.7128 1.3947 29 1 4.6013 -4.8120 2.2352 30 1 4.7183 -4.7105 0.4618 31 1 2.5897 -6.2454 2.0207 32 1 3.9813 -6.9674 1.1782 33 1 1.9356 -7.0879 -0.2179 34 1 3.1612 -6.0396 -0.9705 35 1 2.4319 -4.7550 -2.6464 36 1 1.1529 -4.7761 -4.7505 37 1 -1.2980 -5.0081 -4.6991 38 1 -2.4689 -5.2286 -2.5443 39 1 -1.1890 -5.2169 -0.4408 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261170887.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:10 Heat of formation + Delta-G solvation = -30.128429 kcal Electronic energy + Delta-G solvation = -17840.727677 eV Core-core repulsion = 15324.593164 eV Total energy + Delta-G solvation = -2516.134513 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.86333 -38.73595 -35.28937 -33.58102 -32.71185 -31.68978 -29.76025 -28.35691 -25.11522 -24.17360 -23.40985 -22.03450 -21.47243 -20.20363 -18.41268 -17.67811 -16.61909 -16.19840 -15.91069 -15.36567 -15.08733 -14.79770 -14.60584 -14.42450 -14.09221 -13.83787 -13.47564 -13.22149 -13.14844 -12.80743 -12.56856 -12.48614 -12.15336 -12.09706 -11.79289 -11.66418 -11.63094 -11.38581 -11.13220 -10.66116 -10.63338 -10.45918 -9.70454 -9.37966 -8.14957 -6.23904 0.60321 0.61112 1.37602 1.40320 1.47768 2.41690 2.99889 3.17731 3.76068 3.89169 4.08308 4.15307 4.23513 4.32109 4.38538 4.44760 4.49539 4.67962 4.73486 4.75745 4.78887 4.80216 4.87721 5.05457 5.18877 5.24772 5.26534 5.29616 5.33726 5.36151 5.51559 5.54703 5.58079 5.65717 5.68872 5.70196 5.85507 5.92243 5.96479 6.25481 6.33397 6.92795 7.43601 8.96372 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.008848 C = 0.006373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.674433 B = 3163.870640 C = 4392.333069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.042 3.958 10 C -0.059 4.059 11 H 0.051 0.949 12 C -0.104 4.104 13 C -0.114 4.114 14 C -0.112 4.112 15 C -0.101 4.101 16 C -0.043 4.043 17 H 0.059 0.941 18 C -0.069 4.069 19 C -0.128 4.128 20 C -0.127 4.127 21 C -0.139 4.139 22 C -0.128 4.128 23 C -0.140 4.140 24 H 0.260 0.740 25 H -0.011 1.011 26 H -0.022 1.022 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.122 0.878 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.137 0.863 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.757 -13.421 -3.052 14.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.566 4.566 8 H 0.076 0.924 9 C 0.005 3.995 10 C -0.077 4.077 11 H 0.069 0.931 12 C -0.141 4.141 13 C -0.151 4.151 14 C -0.150 4.150 15 C -0.138 4.138 16 C -0.061 4.061 17 H 0.078 0.922 18 C -0.069 4.069 19 C -0.146 4.146 20 C -0.145 4.145 21 C -0.157 4.157 22 C -0.146 4.146 23 C -0.158 4.158 24 H 0.069 0.931 25 H 0.007 0.993 26 H -0.003 1.003 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.154 0.846 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.617 -13.313 -3.044 14.127 hybrid contribution -0.169 1.437 0.126 1.452 sum 3.448 -11.876 -2.919 12.706 Atomic orbital electron populations 1.70112 1.07706 1.27339 1.52245 1.25911 0.95649 1.03006 0.95260 0.85650 0.78397 0.78818 0.79104 1.19342 1.21075 1.19203 1.21641 0.93258 0.92312 1.49423 0.92380 1.18935 0.93817 0.92775 0.93958 1.21039 0.96325 0.93100 0.97276 0.93097 1.21456 0.97717 0.98365 0.96608 1.21551 0.97390 0.94209 1.01962 1.21518 0.98990 0.97358 0.97102 1.21533 0.97089 0.96595 0.98587 1.20254 0.96392 0.95830 0.93630 0.92219 1.19999 0.94032 0.97375 0.95447 1.21129 1.00314 1.00757 0.92428 1.21411 0.94822 0.99821 0.98473 1.21387 0.94772 1.01016 0.98481 1.21374 1.00581 1.00072 0.92563 1.21247 0.94033 1.01705 0.98795 0.93148 0.99266 1.00315 0.93786 0.93361 0.91110 0.92007 0.92209 0.89917 0.91315 0.91680 0.86028 0.84221 0.83923 0.84552 0.86619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.44 13.29 21.44 0.28 -58.15 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.96 45.41 29.54 68.60 2.03 47.44 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.53 -30.50 8.41 25.60 0.22 -30.29 16 8 H 0.06 3.22 7.05 -2.91 -0.02 3.20 16 9 C 0.04 2.27 4.29 29.85 0.13 2.40 16 10 C -0.06 -2.44 1.48 -10.79 -0.02 -2.45 16 11 H 0.05 2.15 7.37 -2.39 -0.02 2.13 16 12 C -0.10 -3.88 5.01 30.59 0.15 -3.73 16 13 C -0.11 -3.14 5.92 30.60 0.18 -2.96 16 14 C -0.11 -2.71 5.92 30.60 0.18 -2.53 16 15 C -0.10 -2.71 5.02 30.59 0.15 -2.56 16 16 C -0.04 -1.49 1.90 -11.54 -0.02 -1.51 16 17 H 0.06 2.17 7.88 -2.39 -0.02 2.16 16 18 C -0.07 -2.46 3.43 -19.87 -0.07 -2.53 16 19 C -0.13 -4.33 8.71 22.27 0.19 -4.14 16 20 C -0.13 -3.83 10.05 22.27 0.22 -3.60 16 21 C -0.14 -4.00 10.05 22.27 0.22 -3.77 16 22 C -0.13 -3.97 10.05 22.27 0.22 -3.74 16 23 C -0.14 -4.91 9.67 22.27 0.22 -4.69 16 24 H 0.26 15.40 8.31 -92.70 -0.77 14.62 16 25 H -0.01 -0.66 7.04 -2.38 -0.02 -0.67 16 26 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 27 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.05 1.98 6.95 -2.39 -0.02 1.96 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.06 1.70 7.40 -2.39 -0.02 1.68 16 35 H 0.12 3.86 7.10 -2.91 -0.02 3.84 16 36 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 37 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 38 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.12 3.90 7.95 -2.92 -0.02 3.87 16 Total: -1.00 -66.73 307.74 5.75 -60.97 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.99 Total: 15.45 kcal Atomic # 6 Polarization: -68.16 SS G_CDS: 2.45 Total: -65.71 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.28 Total: -58.15 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -66.73 5.75 -60.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261170887.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.846 kcal (2) G-P(sol) polarization free energy of solvation -66.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds