Wall clock time and date at job start Mon Mar 30 2020 07:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00171 * 2 1 4 4 H 1.48501 * 109.47202 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47248 * 300.00310 * 3 2 1 6 6 H 1.48502 * 109.46795 * 59.99912 * 3 2 1 7 7 C 1.37879 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00236 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99662 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47087 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47057 * 56.17126 * 10 9 7 12 12 C 1.53005 * 109.46990 * 296.17659 * 10 9 7 13 13 C 1.53001 * 109.46672 * 299.99735 * 12 10 9 14 14 C 1.52996 * 109.47470 * 299.99951 * 13 12 10 15 15 C 1.52997 * 109.46923 * 59.99923 * 14 13 12 16 16 C 1.52993 * 109.47536 * 300.00308 * 15 14 13 17 17 H 1.08999 * 109.47246 * 299.99591 * 16 15 14 18 18 C 1.50706 * 109.47413 * 180.02562 * 16 15 14 19 19 C 1.38235 * 119.99752 * 320.21755 * 18 16 15 20 20 C 1.38229 * 119.99942 * 180.02562 * 19 18 16 21 21 C 1.38234 * 120.00182 * 0.25717 * 20 19 18 22 22 C 1.38239 * 119.99742 * 359.46460 * 21 20 19 23 23 C 1.38233 * 120.00004 * 140.23695 * 18 16 15 24 24 H 0.96996 * 119.99899 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47542 * 60.00747 * 9 7 2 26 26 H 1.08997 * 109.47473 * 300.00130 * 9 7 2 27 27 H 1.09004 * 109.47293 * 59.99774 * 12 10 9 28 28 H 1.08999 * 109.46748 * 179.97438 * 12 10 9 29 29 H 1.08999 * 109.47468 * 60.00522 * 13 12 10 30 30 H 1.09005 * 109.46771 * 179.97438 * 13 12 10 31 31 H 1.09001 * 109.47460 * 180.02562 * 14 13 12 32 32 H 1.09007 * 109.47070 * 300.00403 * 14 13 12 33 33 H 1.09004 * 109.47083 * 180.02562 * 15 14 13 34 34 H 1.09007 * 109.46856 * 60.00349 * 15 14 13 35 35 H 1.08001 * 119.99887 * 0.02562 * 19 18 16 36 36 H 1.08004 * 119.99936 * 179.97438 * 20 19 18 37 37 H 1.08002 * 120.00234 * 179.72151 * 21 20 19 38 38 H 1.08001 * 119.99918 * 180.27586 * 22 21 20 39 39 H 1.08001 * 120.00240 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9162 -3.5666 0.8532 12 6 3.0603 -3.6363 -1.2951 13 6 2.1185 -3.7704 -2.4934 14 6 1.3559 -5.0933 -2.3972 15 6 0.5409 -5.1192 -1.1026 16 6 1.4826 -4.9850 0.0957 17 1 2.1909 -5.8135 0.0957 18 6 0.6799 -5.0111 1.3709 19 6 -0.5334 -4.3522 1.4374 20 6 -1.2695 -4.3756 2.6072 21 6 -0.7897 -5.0536 3.7122 22 6 0.4209 -5.7174 3.6439 23 6 1.1572 -5.6937 2.4741 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 3.6036 -2.6938 -1.3637 28 1 3.7689 -4.4645 -1.2949 29 1 1.4102 -2.9419 -2.4935 30 1 2.6991 -3.7516 -3.4158 31 1 0.6853 -5.1891 -3.2512 32 1 2.0643 -5.9219 -2.3972 33 1 -0.0020 -6.0619 -1.0339 34 1 -0.1674 -4.2906 -1.1026 35 1 -0.9063 -3.8190 0.5753 36 1 -2.2173 -3.8604 2.6592 37 1 -1.3627 -5.0682 4.6276 38 1 0.7936 -6.2509 4.5058 39 1 2.1051 -6.2086 2.4222 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261170889.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:14 Heat of formation + Delta-G solvation = -8.488340 kcal Electronic energy + Delta-G solvation = -18092.868018 eV Core-core repulsion = 15577.671889 eV Total energy + Delta-G solvation = -2515.196129 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.66925 -37.49173 -32.95843 -32.19033 -30.73172 -30.46352 -28.24971 -26.79131 -23.29451 -22.68775 -22.29459 -20.84768 -20.30311 -17.66385 -16.42156 -16.22381 -14.94402 -14.65007 -14.38866 -14.35437 -13.66926 -13.55646 -12.89518 -12.79286 -12.58598 -12.11398 -11.85633 -11.77856 -11.51899 -11.06904 -10.96646 -10.84795 -10.67590 -10.51494 -10.29089 -10.15764 -9.87042 -9.60680 -9.23844 -8.95457 -8.79890 -8.39994 -8.22070 -8.01683 -5.93871 -3.92868 1.87227 1.91540 3.33191 3.41263 3.44839 4.29351 4.51068 5.12942 5.25401 5.40642 5.42620 5.44219 5.45680 5.57375 5.73563 5.86895 5.99261 6.05023 6.08481 6.14877 6.20152 6.21814 6.25435 6.34295 6.50632 6.57850 6.65893 6.72636 6.81779 6.94135 6.97519 6.99454 7.05140 7.12623 7.23156 7.38332 7.52669 7.80281 7.96155 8.08790 8.53158 9.13147 9.69323 11.17363 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.017865 B = 0.008951 C = 0.006833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.936698 B = 3127.246156 C = 4096.674111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.883 3.117 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.509 4.509 8 H 0.053 0.947 9 C 0.020 3.980 10 C -0.074 4.074 11 H 0.054 0.946 12 C -0.100 4.100 13 C -0.120 4.120 14 C -0.113 4.113 15 C -0.113 4.113 16 C -0.044 4.044 17 H 0.062 0.938 18 C -0.060 4.060 19 C -0.093 4.093 20 C -0.122 4.122 21 C -0.134 4.134 22 C -0.129 4.129 23 C -0.125 4.125 24 H 0.257 0.743 25 H 0.024 0.976 26 H 0.027 0.973 27 H 0.069 0.931 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.261 -11.385 1.065 11.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.712 3.288 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.548 4.548 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.093 4.093 11 H 0.072 0.928 12 C -0.138 4.138 13 C -0.157 4.157 14 C -0.150 4.150 15 C -0.150 4.150 16 C -0.063 4.063 17 H 0.080 0.920 18 C -0.060 4.060 19 C -0.111 4.111 20 C -0.140 4.140 21 C -0.152 4.152 22 C -0.148 4.148 23 C -0.143 4.143 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.148 0.852 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.121 -11.268 1.061 11.319 hybrid contribution 0.489 1.118 0.153 1.230 sum 0.610 -10.151 1.214 10.241 Atomic orbital electron populations 1.69955 1.05869 1.26140 1.51554 1.24962 0.94768 0.98876 0.95745 0.86668 0.80230 0.84453 0.77453 1.19875 1.21185 1.21219 1.21312 0.92910 0.91134 1.49431 0.92885 1.19425 0.93933 0.90596 0.97687 1.21173 0.97620 0.94140 0.96360 0.92784 1.21411 0.97021 1.00550 0.94779 1.21544 0.99115 0.97777 0.97295 1.21481 0.98520 0.97982 0.97057 1.21634 0.98153 1.01338 0.93871 1.20257 0.95958 0.99082 0.90962 0.91991 1.19923 0.94688 0.95954 0.95483 1.21240 0.94240 0.97054 0.98547 1.21125 1.00065 0.99321 0.93495 1.21000 0.96735 0.99233 0.98216 1.20964 0.95540 1.00689 0.97562 1.20960 0.99508 1.00592 0.93201 0.93306 0.95817 0.95465 0.91281 0.94505 0.90290 0.93567 0.92876 0.93068 0.93164 0.90632 0.85203 0.86564 0.86984 0.86965 0.86855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.88 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.51 -14.03 8.40 -34.44 -0.29 -14.32 16 8 H 0.05 1.45 6.98 -52.49 -0.37 1.08 16 9 C 0.02 0.49 2.89 -27.88 -0.08 0.41 16 10 C -0.07 -1.51 2.15 -90.62 -0.19 -1.70 16 11 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 12 C -0.10 -1.87 5.25 -26.73 -0.14 -2.01 16 13 C -0.12 -2.10 5.65 -26.73 -0.15 -2.25 16 14 C -0.11 -1.73 5.92 -26.73 -0.16 -1.89 16 15 C -0.11 -1.85 4.46 -26.74 -0.12 -1.97 16 16 C -0.04 -0.77 2.21 -91.77 -0.20 -0.97 16 17 H 0.06 0.99 8.01 -51.93 -0.42 0.57 16 18 C -0.06 -1.07 4.59 -104.62 -0.48 -1.55 16 19 C -0.09 -1.72 6.91 -39.59 -0.27 -2.00 16 20 C -0.12 -2.06 10.05 -39.59 -0.40 -2.45 16 21 C -0.13 -2.04 10.05 -39.58 -0.40 -2.43 16 22 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 23 C -0.12 -2.00 9.67 -39.58 -0.38 -2.39 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.02 0.61 4.82 -51.93 -0.25 0.36 16 26 H 0.03 0.72 5.30 -51.93 -0.27 0.44 16 27 H 0.07 1.40 6.87 -51.93 -0.36 1.05 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.61 6.35 -51.93 -0.33 1.28 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.38 4.98 -51.93 -0.26 1.12 16 35 H 0.13 2.56 5.68 -52.49 -0.30 2.26 16 36 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 37 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 39 H 0.11 1.60 8.04 -52.49 -0.42 1.18 16 LS Contribution 296.18 15.07 4.46 4.46 Total: -1.00 -29.07 296.18 -9.50 -38.57 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.91 Total: 2.23 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: -3.76 Total: -36.33 kcal Atomic # 7 Polarization: -26.37 SS G_CDS: 0.74 Total: -25.64 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.07 -9.50 -38.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261170889.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.078 kcal (2) G-P(sol) polarization free energy of solvation -29.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds