Wall clock time and date at job start Mon Mar 30 2020 07:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00171 * 2 1 4 4 H 1.48501 * 109.47202 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47248 * 300.00310 * 3 2 1 6 6 H 1.48502 * 109.46795 * 59.99912 * 3 2 1 7 7 C 1.37879 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00236 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99662 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47087 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47057 * 56.17126 * 10 9 7 12 12 C 1.53005 * 109.46990 * 296.17659 * 10 9 7 13 13 C 1.53001 * 109.46672 * 299.99735 * 12 10 9 14 14 C 1.52996 * 109.47470 * 299.99951 * 13 12 10 15 15 C 1.52997 * 109.46923 * 59.99923 * 14 13 12 16 16 C 1.52993 * 109.47536 * 300.00308 * 15 14 13 17 17 H 1.08999 * 109.47246 * 299.99591 * 16 15 14 18 18 C 1.50706 * 109.47413 * 180.02562 * 16 15 14 19 19 C 1.38235 * 119.99752 * 320.21755 * 18 16 15 20 20 C 1.38229 * 119.99942 * 180.02562 * 19 18 16 21 21 C 1.38234 * 120.00182 * 0.25717 * 20 19 18 22 22 C 1.38239 * 119.99742 * 359.46460 * 21 20 19 23 23 C 1.38233 * 120.00004 * 140.23695 * 18 16 15 24 24 H 0.96996 * 119.99899 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47542 * 60.00747 * 9 7 2 26 26 H 1.08997 * 109.47473 * 300.00130 * 9 7 2 27 27 H 1.09004 * 109.47293 * 59.99774 * 12 10 9 28 28 H 1.08999 * 109.46748 * 179.97438 * 12 10 9 29 29 H 1.08999 * 109.47468 * 60.00522 * 13 12 10 30 30 H 1.09005 * 109.46771 * 179.97438 * 13 12 10 31 31 H 1.09001 * 109.47460 * 180.02562 * 14 13 12 32 32 H 1.09007 * 109.47070 * 300.00403 * 14 13 12 33 33 H 1.09004 * 109.47083 * 180.02562 * 15 14 13 34 34 H 1.09007 * 109.46856 * 60.00349 * 15 14 13 35 35 H 1.08001 * 119.99887 * 0.02562 * 19 18 16 36 36 H 1.08004 * 119.99936 * 179.97438 * 20 19 18 37 37 H 1.08002 * 120.00234 * 179.72151 * 21 20 19 38 38 H 1.08001 * 119.99918 * 180.27586 * 22 21 20 39 39 H 1.08001 * 120.00240 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9162 -3.5666 0.8532 12 6 3.0603 -3.6363 -1.2951 13 6 2.1185 -3.7704 -2.4934 14 6 1.3559 -5.0933 -2.3972 15 6 0.5409 -5.1192 -1.1026 16 6 1.4826 -4.9850 0.0957 17 1 2.1909 -5.8135 0.0957 18 6 0.6799 -5.0111 1.3709 19 6 -0.5334 -4.3522 1.4374 20 6 -1.2695 -4.3756 2.6072 21 6 -0.7897 -5.0536 3.7122 22 6 0.4209 -5.7174 3.6439 23 6 1.1572 -5.6937 2.4741 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 3.6036 -2.6938 -1.3637 28 1 3.7689 -4.4645 -1.2949 29 1 1.4102 -2.9419 -2.4935 30 1 2.6991 -3.7516 -3.4158 31 1 0.6853 -5.1891 -3.2512 32 1 2.0643 -5.9219 -2.3972 33 1 -0.0020 -6.0619 -1.0339 34 1 -0.1674 -4.2906 -1.1026 35 1 -0.9063 -3.8190 0.5753 36 1 -2.2173 -3.8604 2.6592 37 1 -1.3627 -5.0682 4.6276 38 1 0.7936 -6.2509 4.5058 39 1 2.1051 -6.2086 2.4222 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261170889.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:13 Heat of formation + Delta-G solvation = -21.852068 kcal Electronic energy + Delta-G solvation = -18093.447513 eV Core-core repulsion = 15577.671889 eV Total energy + Delta-G solvation = -2515.775623 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.05642 -38.84786 -35.00642 -33.51982 -32.40953 -31.74316 -29.64481 -28.61277 -25.19148 -24.09133 -23.60502 -22.29752 -21.65090 -19.23438 -18.31844 -17.68006 -16.46421 -16.35108 -15.93887 -15.75432 -15.11870 -14.93906 -14.46388 -14.15709 -13.97680 -13.80560 -13.46283 -13.23314 -13.01474 -12.86930 -12.63020 -12.35615 -12.31416 -12.02061 -11.92961 -11.63097 -11.45204 -11.22264 -10.79715 -10.69823 -10.57277 -10.36447 -9.64072 -9.37021 -8.12202 -6.17887 0.59847 0.63660 1.36245 1.37706 1.49093 2.42933 3.00780 3.21471 3.82641 3.91688 4.08275 4.18874 4.24857 4.33939 4.43507 4.51180 4.60544 4.69740 4.76024 4.78065 4.80307 4.84174 4.86312 5.05649 5.22294 5.24210 5.28401 5.35653 5.38410 5.42473 5.45645 5.59530 5.64497 5.69385 5.74526 5.78682 5.95338 5.99452 6.05193 6.27154 6.40793 6.99307 7.47854 8.98946 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.017865 B = 0.008951 C = 0.006833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.936698 B = 3127.246156 C = 4096.674111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.948 3.052 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.051 0.949 9 C 0.033 3.967 10 C -0.070 4.070 11 H 0.040 0.960 12 C -0.098 4.098 13 C -0.118 4.118 14 C -0.107 4.107 15 C -0.110 4.110 16 C -0.038 4.038 17 H 0.088 0.912 18 C -0.079 4.079 19 C -0.118 4.118 20 C -0.140 4.140 21 C -0.134 4.134 22 C -0.127 4.127 23 C -0.130 4.130 24 H 0.258 0.742 25 H 0.004 0.996 26 H 0.002 0.998 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.101 0.899 36 H 0.121 0.879 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.767 -13.154 1.673 13.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.774 3.226 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.069 0.931 9 C -0.003 4.003 10 C -0.088 4.088 11 H 0.059 0.941 12 C -0.136 4.136 13 C -0.155 4.155 14 C -0.144 4.144 15 C -0.147 4.147 16 C -0.056 4.056 17 H 0.106 0.894 18 C -0.079 4.079 19 C -0.136 4.136 20 C -0.158 4.158 21 C -0.151 4.151 22 C -0.144 4.144 23 C -0.148 4.148 24 H 0.067 0.933 25 H 0.022 0.978 26 H 0.020 0.980 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.119 0.881 36 H 0.139 0.861 37 H 0.160 0.840 38 H 0.166 0.834 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.636 -13.042 1.665 13.249 hybrid contribution -0.015 1.659 0.011 1.659 sum 1.622 -11.383 1.676 11.620 Atomic orbital electron populations 1.70090 1.07354 1.26937 1.52709 1.25781 0.95606 1.02475 0.95641 0.85658 0.79282 0.80201 0.77500 1.18943 1.20626 1.20915 1.21734 0.93055 0.92720 1.48664 0.93085 1.19211 0.94090 0.91546 0.95494 1.21036 0.96701 0.94232 0.96842 0.94125 1.21381 0.97333 1.00594 0.94246 1.21492 0.98473 0.97770 0.97790 1.21462 0.98865 0.97288 0.96776 1.21590 0.97786 1.00964 0.94402 1.20202 0.96186 0.97827 0.91357 0.89350 1.20059 0.94536 0.96812 0.96529 1.21160 0.95630 0.98286 0.98508 1.21337 1.00507 1.00146 0.93826 1.21368 0.97199 0.98104 0.98471 1.21411 0.94911 0.99858 0.98247 1.21298 1.00477 1.00119 0.92867 0.93312 0.97794 0.97964 0.93716 0.91225 0.94376 0.91459 0.91517 0.90334 0.91287 0.93839 0.88090 0.86093 0.84035 0.83444 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.95 45.44 29.54 68.60 2.03 47.47 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 6 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.52 -29.83 8.40 25.60 0.21 -29.61 16 8 H 0.05 2.85 6.98 -2.91 -0.02 2.83 16 9 C 0.03 1.71 2.89 29.85 0.09 1.80 16 10 C -0.07 -2.84 2.15 -10.79 -0.02 -2.87 16 11 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 12 C -0.10 -3.59 5.25 30.60 0.16 -3.43 16 13 C -0.12 -4.06 5.65 30.59 0.17 -3.89 16 14 C -0.11 -3.06 5.92 30.59 0.18 -2.88 16 15 C -0.11 -3.57 4.46 30.59 0.14 -3.44 16 16 C -0.04 -1.27 2.21 -11.54 -0.03 -1.29 16 17 H 0.09 2.53 8.01 -2.39 -0.02 2.51 16 18 C -0.08 -2.80 4.59 -19.86 -0.09 -2.89 16 19 C -0.12 -4.56 6.91 22.27 0.15 -4.41 16 20 C -0.14 -4.81 10.05 22.27 0.22 -4.58 16 21 C -0.13 -3.83 10.05 22.27 0.22 -3.60 16 22 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 23 C -0.13 -3.88 9.67 22.27 0.22 -3.67 16 24 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 25 H 0.00 0.21 4.82 -2.39 -0.01 0.20 16 26 H 0.00 0.12 5.30 -2.39 -0.01 0.11 16 27 H 0.04 1.82 6.87 -2.38 -0.02 1.81 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.04 1.61 6.35 -2.39 -0.02 1.60 16 30 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.04 1.69 4.98 -2.38 -0.01 1.67 16 35 H 0.10 4.39 5.68 -2.91 -0.02 4.37 16 36 H 0.12 3.84 8.06 -2.91 -0.02 3.82 16 37 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 38 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 39 H 0.14 3.38 8.04 -2.91 -0.02 3.35 16 Total: -1.00 -64.97 296.18 5.64 -59.33 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 1.02 Total: 17.23 kcal Atomic # 6 Polarization: -69.67 SS G_CDS: 2.32 Total: -67.36 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.28 Total: -56.66 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -64.97 5.64 -59.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261170889.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.476 kcal (2) G-P(sol) polarization free energy of solvation -64.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds