Wall clock time and date at job start Mon Mar 30 2020 06:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00116 * 2 1 3 5 5 C 1.33982 * 125.02051 * 275.00252 * 4 2 1 6 6 C 1.38247 * 107.90382 * 179.97438 * 5 4 2 7 7 C 1.41134 * 134.81939 * 180.02562 * 6 5 4 8 8 C 1.35651 * 119.53796 * 179.97438 * 7 6 5 9 9 C 1.39671 * 121.72709 * 0.02562 * 8 7 6 10 10 C 1.35645 * 121.81984 * 359.97438 * 9 8 7 11 11 C 1.50697 * 120.20385 * 179.97438 * 10 9 8 12 12 C 1.50692 * 109.47422 * 265.02686 * 11 10 9 13 13 H 1.07999 * 120.00044 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00081 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00040 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00142 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47116 * 59.99881 * 16 14 12 18 18 H 1.48504 * 109.47226 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47236 * 300.00101 * 16 14 12 20 20 C 1.41149 * 119.59017 * 0.02562 * 10 9 8 21 21 N 1.32062 * 134.67807 * 180.36511 * 20 10 9 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 26 26 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 27 27 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 29 29 H 1.07994 * 126.05128 * 0.02562 * 5 4 2 30 30 H 1.08006 * 120.22394 * 359.95401 * 7 6 5 31 31 H 1.08000 * 119.13537 * 179.97438 * 8 7 6 32 32 H 1.08000 * 119.09394 * 179.97438 * 9 8 7 33 33 H 1.08999 * 109.46859 * 25.03050 * 11 10 9 34 34 H 1.09000 * 109.46635 * 145.02361 * 11 10 9 35 35 H 0.96997 * 120.00278 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1845 -0.1224 2.3981 6 6 2.6579 -1.0905 3.2640 7 6 3.0178 -1.1146 4.6285 8 6 3.4585 -2.2713 5.1836 9 6 3.5681 -3.4481 4.4393 10 6 3.2394 -3.4958 3.1242 11 6 3.3723 -4.7853 2.3558 12 6 4.7052 -4.8165 1.6533 13 1 5.3876 -3.9854 1.7529 14 6 5.0530 -5.9055 0.8826 15 7 4.2217 -6.9173 0.7609 16 14 6.7048 -5.9438 0.0113 17 1 7.7959 -5.8511 1.0145 18 1 6.8358 -7.2146 -0.7458 19 1 6.7963 -4.7964 -0.9270 20 6 2.7732 -2.3298 2.4795 21 7 2.3753 -2.0427 1.2534 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.9834 0.9091 2.6467 30 1 2.9432 -0.2182 5.2264 31 1 3.7326 -2.2822 6.2281 32 1 3.9244 -4.3449 4.9243 33 1 3.3049 -5.6273 3.0447 34 1 2.5717 -4.8535 1.6193 35 1 4.4662 -7.6833 0.2184 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261180238.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:00 Heat of formation + Delta-G solvation = 82.048483 kcal Electronic energy + Delta-G solvation = -17038.170752 eV Core-core repulsion = 14423.360251 eV Total energy + Delta-G solvation = -2614.810501 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.81340 -37.35125 -34.79911 -33.37166 -31.57744 -29.36387 -28.93296 -27.50725 -26.60931 -24.12436 -22.65668 -21.37553 -20.25080 -19.02311 -16.83144 -16.34490 -16.16631 -15.08059 -14.99793 -14.40616 -14.22192 -13.98932 -13.20309 -12.92254 -12.58443 -12.52638 -12.20259 -12.15882 -11.67896 -11.55162 -11.23279 -11.17596 -10.89830 -10.73641 -10.57515 -10.32939 -10.01572 -9.68892 -9.15940 -9.09020 -8.28970 -7.94419 -6.80416 -5.89995 -3.92751 1.28866 2.52757 2.69172 3.07105 3.39687 3.42484 3.46828 4.38816 4.49216 4.67245 4.71599 4.81581 4.90626 5.10538 5.24205 5.38017 5.44083 5.44669 5.56831 5.64728 5.76335 5.81534 5.94096 5.97937 6.06996 6.34682 6.45841 6.91298 7.12041 7.16394 7.32208 7.38559 7.60819 7.75198 7.96934 8.05119 8.30970 8.47955 9.10466 9.68862 11.19329 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019365 B = 0.007282 C = 0.005925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.526453 B = 3844.309641 C = 4724.962741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 C -0.163 4.163 4 N -0.326 5.326 5 C 0.045 3.955 6 C -0.198 4.198 7 C -0.093 4.093 8 C -0.127 4.127 9 C -0.128 4.128 10 C -0.004 4.004 11 C 0.053 3.947 12 C -0.500 4.500 13 H 0.053 0.947 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.278 1.278 20 C 0.110 3.890 21 N -0.278 5.278 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.107 0.893 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.171 0.829 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.029 0.971 34 H 0.031 0.969 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.320 16.621 2.177 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.044 3.956 3 C -0.222 4.222 4 N -0.103 5.103 5 C -0.108 4.108 6 C -0.208 4.208 7 C -0.113 4.113 8 C -0.146 4.146 9 C -0.151 4.151 10 C -0.007 4.007 11 C 0.017 3.983 12 C -0.538 4.538 13 H 0.071 0.929 14 C -0.143 4.143 15 N -0.536 5.536 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.204 1.204 20 C -0.044 4.044 21 N -0.103 5.103 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.125 0.875 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.188 0.812 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.138 0.862 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.597 16.041 0.714 17.359 hybrid contribution 1.065 0.349 0.235 1.145 sum -5.532 16.390 0.949 17.324 Atomic orbital electron populations 1.22221 0.93421 1.03656 1.02791 1.21353 0.94994 0.92730 0.86554 1.22203 1.02549 0.93978 1.03431 1.48857 1.45435 1.08071 1.07926 1.22225 1.03880 0.98703 0.86033 1.19618 1.11720 0.93470 0.95976 1.19906 1.01884 0.97697 0.91852 1.20472 1.01879 0.93082 0.99217 1.20437 1.02842 0.97997 0.93803 1.19636 0.93748 0.94320 0.93029 1.18282 0.97714 0.87726 0.94627 1.20957 1.00978 1.03037 1.28843 0.92856 1.24964 0.97098 0.95635 0.96575 1.69948 1.35842 1.07460 1.40346 0.86634 0.84354 0.77100 0.79787 1.20209 1.21273 1.20381 1.20931 0.98467 0.94578 0.90407 1.77915 1.23800 0.89767 1.18820 0.91969 0.91258 0.90529 0.87501 0.91555 0.91320 0.90039 0.81152 0.87197 0.87118 0.86169 0.95263 0.95052 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.52 37.16 0.35 -1.25 16 2 C 0.15 1.73 3.87 -67.93 -0.26 1.46 16 3 C -0.16 -1.36 8.80 37.16 0.33 -1.04 16 4 N -0.33 -5.45 3.47 -54.33 -0.19 -5.63 16 5 C 0.05 0.69 10.60 -16.61 -0.18 0.52 16 6 C -0.20 -3.71 6.33 -105.19 -0.67 -4.38 16 7 C -0.09 -1.55 10.09 -39.41 -0.40 -1.95 16 8 C -0.13 -2.20 9.90 -39.97 -0.40 -2.60 16 9 C -0.13 -2.67 9.52 -39.97 -0.38 -3.05 16 10 C 0.00 -0.11 5.08 -104.45 -0.53 -0.64 16 11 C 0.05 1.49 5.12 -29.04 -0.15 1.34 16 12 C -0.50 -14.94 9.09 -34.44 -0.31 -15.25 16 13 H 0.05 1.60 7.74 -52.49 -0.41 1.20 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.90 -27.71 13.29 55.43 0.74 -26.97 16 16 Si 0.89 22.66 29.54 -169.99 -5.02 17.64 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 20 C 0.11 2.53 7.21 -83.06 -0.60 1.93 16 21 N -0.28 -6.24 12.54 33.25 0.42 -5.83 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.07 0.47 7.05 -51.93 -0.37 0.11 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.17 1.80 7.13 -52.49 -0.37 1.42 16 30 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 31 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.12 2.37 8.03 -52.49 -0.42 1.94 16 33 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 34 H 0.03 0.94 8.13 -51.93 -0.42 0.52 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 300.15 15.07 4.52 4.52 Total: -1.00 -34.69 300.15 -7.74 -42.43 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -4.92 Total: -2.89 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -3.29 Total: -23.28 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.96 Total: -38.43 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.69 -7.74 -42.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261180238.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.483 kcal (2) G-P(sol) polarization free energy of solvation -34.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds