Wall clock time and date at job start Mon Mar 30 2020 06:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00116 * 2 1 3 5 5 C 1.33982 * 125.02051 * 275.00252 * 4 2 1 6 6 C 1.38247 * 107.90382 * 179.97438 * 5 4 2 7 7 C 1.41134 * 134.81939 * 180.02562 * 6 5 4 8 8 C 1.35651 * 119.53796 * 179.97438 * 7 6 5 9 9 C 1.39671 * 121.72709 * 0.02562 * 8 7 6 10 10 C 1.35645 * 121.81984 * 359.97438 * 9 8 7 11 11 C 1.50697 * 120.20385 * 179.97438 * 10 9 8 12 12 C 1.50692 * 109.47422 * 265.02686 * 11 10 9 13 13 H 1.07999 * 120.00044 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00081 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00040 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00142 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47116 * 59.99881 * 16 14 12 18 18 H 1.48504 * 109.47226 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47236 * 300.00101 * 16 14 12 20 20 C 1.41149 * 119.59017 * 0.02562 * 10 9 8 21 21 N 1.32062 * 134.67807 * 180.36511 * 20 10 9 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 26 26 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 27 27 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 29 29 H 1.07994 * 126.05128 * 0.02562 * 5 4 2 30 30 H 1.08006 * 120.22394 * 359.95401 * 7 6 5 31 31 H 1.08000 * 119.13537 * 179.97438 * 8 7 6 32 32 H 1.08000 * 119.09394 * 179.97438 * 9 8 7 33 33 H 1.08999 * 109.46859 * 25.03050 * 11 10 9 34 34 H 1.09000 * 109.46635 * 145.02361 * 11 10 9 35 35 H 0.96997 * 120.00278 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1845 -0.1224 2.3981 6 6 2.6579 -1.0905 3.2640 7 6 3.0178 -1.1146 4.6285 8 6 3.4585 -2.2713 5.1836 9 6 3.5681 -3.4481 4.4393 10 6 3.2394 -3.4958 3.1242 11 6 3.3723 -4.7853 2.3558 12 6 4.7052 -4.8165 1.6533 13 1 5.3876 -3.9854 1.7529 14 6 5.0530 -5.9055 0.8826 15 7 4.2217 -6.9173 0.7609 16 14 6.7048 -5.9438 0.0113 17 1 7.7959 -5.8511 1.0145 18 1 6.8358 -7.2146 -0.7458 19 1 6.7963 -4.7964 -0.9270 20 6 2.7732 -2.3298 2.4795 21 7 2.3753 -2.0427 1.2534 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.9834 0.9091 2.6467 30 1 2.9432 -0.2182 5.2264 31 1 3.7326 -2.2822 6.2281 32 1 3.9244 -4.3449 4.9243 33 1 3.3049 -5.6273 3.0447 34 1 2.5717 -4.8535 1.6193 35 1 4.4662 -7.6833 0.2184 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261180238.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:58 Heat of formation + Delta-G solvation = 59.803403 kcal Electronic energy + Delta-G solvation = -17039.135371 eV Core-core repulsion = 14423.360251 eV Total energy + Delta-G solvation = -2615.775120 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.17446 -38.72504 -35.96710 -35.37054 -33.40548 -30.78684 -30.39084 -28.58473 -28.14494 -25.63764 -24.52156 -22.81858 -21.42241 -20.45032 -18.52735 -18.10766 -17.62785 -16.69899 -16.24613 -16.10096 -15.46964 -15.23733 -14.57091 -14.37657 -14.10533 -13.84207 -13.41566 -13.18990 -13.15854 -13.01298 -12.75173 -12.59758 -12.46937 -12.22239 -12.15826 -11.99263 -11.79667 -11.60065 -10.88081 -10.81347 -10.61712 -9.37739 -8.41720 -8.10084 -6.32948 -0.08830 1.05110 1.32224 1.37392 1.45253 1.55275 1.66068 2.37724 3.08925 3.11197 3.34526 3.71259 3.86574 3.94916 4.06448 4.24514 4.38545 4.51324 4.60939 4.63900 4.72572 4.78528 4.79655 4.88547 5.01534 5.15084 5.21424 5.23340 5.27415 5.47390 5.65237 5.76655 5.81455 6.06156 6.11454 6.19248 6.29910 6.77087 6.88637 7.33665 8.89551 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019365 B = 0.007282 C = 0.005925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.526453 B = 3844.309641 C = 4724.962741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.130 3.870 3 C -0.154 4.154 4 N -0.319 5.319 5 C 0.087 3.913 6 C -0.231 4.231 7 C -0.056 4.056 8 C -0.155 4.155 9 C -0.108 4.108 10 C -0.071 4.071 11 C 0.071 3.929 12 C -0.518 4.518 13 H 0.044 0.956 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.967 3.033 17 H -0.262 1.262 18 H -0.274 1.274 19 H -0.275 1.275 20 C 0.080 3.920 21 N -0.355 5.355 22 H 0.078 0.922 23 H 0.035 0.965 24 H 0.109 0.891 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.110 0.890 29 H 0.235 0.765 30 H 0.164 0.836 31 H 0.151 0.849 32 H 0.116 0.884 33 H 0.003 0.997 34 H -0.014 1.014 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.024 21.004 3.066 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.029 3.971 3 C -0.212 4.212 4 N -0.094 5.094 5 C -0.069 4.069 6 C -0.241 4.241 7 C -0.076 4.076 8 C -0.174 4.174 9 C -0.131 4.131 10 C -0.074 4.074 11 C 0.034 3.966 12 C -0.556 4.556 13 H 0.062 0.938 14 C -0.196 4.196 15 N -0.573 5.573 16 Si 0.790 3.210 17 H -0.187 1.187 18 H -0.199 1.199 19 H -0.200 1.200 20 C -0.072 4.072 21 N -0.182 5.182 22 H 0.097 0.903 23 H 0.054 0.946 24 H 0.128 0.872 25 H 0.105 0.895 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.129 0.871 29 H 0.251 0.749 30 H 0.181 0.819 31 H 0.168 0.832 32 H 0.134 0.866 33 H 0.022 0.978 34 H 0.004 0.996 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.308 20.416 1.592 21.427 hybrid contribution 0.845 -0.833 -0.056 1.188 sum -5.463 19.582 1.536 20.388 Atomic orbital electron populations 1.22194 0.91601 1.02257 1.05225 1.21881 0.96441 0.94393 0.84340 1.22215 1.01759 0.91042 1.06148 1.49317 1.43579 1.06599 1.09872 1.23175 0.99195 1.00258 0.84274 1.20134 1.14012 0.92559 0.97371 1.20515 0.97074 0.98975 0.90990 1.20747 1.03827 0.91955 1.00854 1.20654 1.00067 0.99660 0.92702 1.19332 0.99958 0.93536 0.94567 1.17875 0.95556 0.89834 0.93343 1.21225 1.01832 1.02952 1.29626 0.93796 1.25951 1.01448 0.94989 0.97180 1.70087 1.38024 1.08118 1.41050 0.85491 0.79274 0.77530 0.78680 1.18702 1.19893 1.20024 1.21003 0.98893 0.95759 0.91546 1.77815 1.27326 0.93327 1.19762 0.90347 0.94571 0.87210 0.89485 0.89065 0.92509 0.87123 0.74925 0.81857 0.83165 0.86588 0.97827 0.99579 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.52 71.98 0.69 -2.03 16 2 C 0.13 2.85 3.87 44.99 0.17 3.03 16 3 C -0.15 -1.89 8.80 71.98 0.63 -1.26 16 4 N -0.32 -10.33 3.47 -325.80 -1.13 -11.46 16 5 C 0.09 2.34 10.60 84.37 0.89 3.24 16 6 C -0.23 -8.18 6.33 -20.23 -0.13 -8.31 16 7 C -0.06 -1.64 10.09 22.38 0.23 -1.41 16 8 C -0.15 -5.04 9.90 22.02 0.22 -4.82 16 9 C -0.11 -4.67 9.52 22.02 0.21 -4.46 16 10 C -0.07 -3.67 5.08 -19.75 -0.10 -3.77 16 11 C 0.07 4.36 5.12 29.10 0.15 4.51 16 12 C -0.52 -33.16 9.09 25.60 0.23 -32.92 16 13 H 0.04 2.81 7.74 -2.91 -0.02 2.78 16 14 C 0.00 0.11 5.46 84.65 0.46 0.57 16 15 N -0.93 -60.79 13.29 21.45 0.28 -60.51 16 16 Si 0.97 48.05 29.54 68.60 2.03 50.07 16 17 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.27 -13.42 7.11 99.48 0.71 -12.71 16 20 C 0.08 3.83 7.21 42.16 0.30 4.14 16 21 N -0.35 -16.87 12.54 -48.71 -0.61 -17.48 16 22 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.09 0.70 7.05 -2.39 -0.02 0.68 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.23 3.13 7.13 -2.91 -0.02 3.11 16 30 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 31 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 32 H 0.12 4.85 8.03 -2.91 -0.02 4.82 16 33 H 0.00 0.22 8.03 -2.39 -0.02 0.20 16 34 H -0.01 -0.96 8.13 -2.39 -0.02 -0.98 16 35 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -85.52 300.15 5.59 -79.93 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: 1.06 Total: 2.96 kcal Atomic # 6 Polarization: -47.47 SS G_CDS: 3.96 Total: -43.51 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -1.46 Total: -89.44 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.07 kcal Total: -85.52 5.59 -79.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261180238.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.729 kcal (2) G-P(sol) polarization free energy of solvation -85.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds