Wall clock time and date at job start Mon Mar 30 2020 06:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46577 * 2 1 4 4 N 1.39870 * 125.45962 * 270.03496 * 3 2 1 5 5 C 1.30243 * 110.09104 * 179.97438 * 4 3 2 6 6 C 1.50705 * 126.10583 * 180.02562 * 5 4 3 7 7 C 1.45929 * 107.78997 * 359.76124 * 5 4 3 8 8 C 1.37052 * 125.45903 * 90.00141 * 3 2 1 9 9 C 1.39238 * 133.85599 * 0.05441 * 8 3 2 10 10 C 1.36632 * 119.85204 * 179.97438 * 9 8 3 11 11 C 1.38926 * 120.81297 * 359.97438 * 10 9 8 12 12 C 1.36500 * 120.62641 * 0.02562 * 11 10 9 13 13 C 1.50704 * 120.17792 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47007 * 258.52964 * 13 12 11 15 15 H 1.07995 * 120.00185 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99702 * 179.72533 * 14 13 12 17 17 N 1.31513 * 120.00359 * 0.27645 * 16 14 13 18 18 Si 1.86805 * 119.99628 * 180.27446 * 16 14 13 19 19 H 1.48495 * 109.47290 * 60.00272 * 18 16 14 20 20 H 1.48502 * 109.46942 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47091 * 299.99885 * 18 16 14 22 22 H 1.09003 * 109.46762 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47071 * 299.99665 * 1 2 3 24 24 H 1.08996 * 109.47147 * 60.00511 * 1 2 3 25 25 H 1.08991 * 109.47216 * 240.00241 * 2 1 3 26 26 H 1.08996 * 109.47147 * 119.99489 * 2 1 3 27 27 H 1.08992 * 109.47516 * 95.76235 * 6 5 4 28 28 H 1.08998 * 109.46907 * 215.77137 * 6 5 4 29 29 H 1.09001 * 109.46703 * 335.76605 * 6 5 4 30 30 H 1.08003 * 120.07589 * 0.02562 * 9 8 3 31 31 H 1.07992 * 119.59268 * 179.97438 * 10 9 8 32 32 H 1.07999 * 119.68213 * 180.02562 * 11 10 9 33 33 H 1.08998 * 109.47262 * 138.52685 * 13 12 11 34 34 H 1.09006 * 109.47007 * 18.53076 * 13 12 11 35 35 H 0.97003 * 120.00009 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2880 2.1466 -1.1393 5 6 2.7062 3.3307 -0.7941 6 6 3.0978 4.4428 -1.7328 7 6 2.7217 3.3906 0.6639 8 6 2.2832 2.1309 1.1163 9 6 2.1981 1.8872 2.4846 10 6 2.5444 2.8661 3.3726 11 6 2.9828 4.1073 2.9283 12 6 3.0763 4.3746 1.5930 13 6 3.5538 5.7243 1.1223 14 6 2.3706 6.5558 0.6982 15 1 1.3728 6.1476 0.7626 16 6 2.5616 7.8395 0.2327 17 7 3.7767 8.3364 0.1537 18 14 1.0943 8.8728 -0.2858 19 1 0.1758 9.0428 0.8685 20 1 1.5643 10.2049 -0.7441 21 1 0.3766 8.1926 -1.3936 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.8933 -0.5137 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 2.2496 5.1117 -1.8776 28 1 3.9320 5.0005 -1.3072 29 1 3.3952 4.0202 -2.6925 30 1 1.8599 0.9262 2.8432 31 1 2.4764 2.6727 4.4329 32 1 3.2523 4.8677 3.6463 33 1 4.2296 5.5961 0.2768 34 1 4.0791 6.2274 1.9342 35 1 3.9109 9.2397 -0.1734 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261180986.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:31 Heat of formation + Delta-G solvation = 70.367237 kcal Electronic energy + Delta-G solvation = -17378.088532 eV Core-core repulsion = 14762.771494 eV Total energy + Delta-G solvation = -2615.317038 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.72084 -36.89165 -34.62284 -33.34319 -31.44778 -30.09710 -29.04454 -27.43510 -26.41479 -23.41798 -22.91982 -21.49927 -20.79089 -18.49926 -16.50954 -16.29924 -16.08840 -14.84674 -14.69589 -14.53726 -14.06958 -13.87178 -13.01987 -12.76181 -12.48068 -12.25013 -12.12921 -11.94620 -11.87070 -11.42487 -11.31793 -11.12370 -10.94914 -10.78375 -10.48853 -10.41887 -9.94622 -9.60698 -9.39991 -8.90957 -8.41140 -7.94717 -7.10156 -6.03858 -4.06737 1.62754 2.20200 2.83943 3.08531 3.32257 3.36869 3.40543 4.37901 4.55715 4.70401 5.07686 5.11972 5.21897 5.28999 5.31323 5.37242 5.53647 5.64818 5.78792 5.84538 6.06293 6.09962 6.25647 6.30548 6.42577 6.52982 6.67993 6.79248 7.00212 7.16599 7.22323 7.45575 7.59901 7.69572 7.83187 7.92662 8.26432 8.32184 8.97290 9.56250 11.05641 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025435 B = 0.007338 C = 0.006578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.569934 B = 3814.899487 C = 4255.300648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.145 3.855 3 N -0.420 5.420 4 N -0.284 5.284 5 C 0.129 3.871 6 C -0.072 4.072 7 C -0.172 4.172 8 C 0.129 3.871 9 C -0.181 4.181 10 C -0.062 4.062 11 C -0.186 4.186 12 C 0.048 3.952 13 C 0.043 3.957 14 C -0.503 4.503 15 H 0.055 0.945 16 C 0.062 3.938 17 N -0.893 5.893 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.039 0.961 34 H 0.030 0.970 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.734 -13.035 1.551 13.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.023 3.977 3 N -0.208 5.208 4 N -0.097 5.097 5 C -0.048 4.048 6 C -0.130 4.130 7 C -0.180 4.180 8 C 0.015 3.985 9 C -0.203 4.203 10 C -0.082 4.082 11 C -0.205 4.205 12 C 0.046 3.954 13 C 0.007 3.993 14 C -0.542 4.542 15 H 0.073 0.927 16 C -0.139 4.139 17 N -0.532 5.532 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.201 1.201 22 H 0.088 0.912 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.128 0.872 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.969 -13.839 0.502 14.163 hybrid contribution -0.811 0.970 0.515 1.365 sum -3.781 -12.869 1.017 13.452 Atomic orbital electron populations 1.22219 0.95382 1.02158 1.03162 1.21332 0.94448 0.78698 1.03218 1.48090 1.59733 1.11743 1.01255 1.76465 1.20155 1.04654 1.08459 1.23624 0.95533 0.92894 0.92727 1.20389 1.03965 0.93306 0.95365 1.19670 1.11034 0.94433 0.92838 1.18830 0.98500 0.91773 0.89381 1.19476 1.11314 1.00523 0.88989 1.20610 0.96131 0.93053 0.98415 1.20562 1.07320 0.97147 0.95503 1.20024 0.88699 0.95233 0.91447 1.18509 0.96951 0.86503 0.97380 1.20890 0.92581 0.97780 1.42902 0.92684 1.24931 0.95617 0.97609 0.95762 1.69934 1.20185 1.16409 1.46632 0.86683 0.82956 0.79470 0.79129 1.20284 1.21246 1.20143 0.91227 0.92157 0.91869 0.89605 0.89931 0.89346 0.88547 0.92188 0.87153 0.86476 0.86145 0.94357 0.95170 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 10.24 37.16 0.38 -1.56 16 2 C 0.15 1.84 7.09 -4.04 -0.03 1.82 16 3 N -0.42 -7.50 3.65 -58.71 -0.21 -7.71 16 4 N -0.28 -5.64 12.40 34.84 0.43 -5.21 16 5 C 0.13 2.70 7.43 -80.19 -0.60 2.10 16 6 C -0.07 -1.39 9.46 36.01 0.34 -1.05 16 7 C -0.17 -3.72 6.13 -105.21 -0.65 -4.37 16 8 C 0.13 2.47 6.87 -84.17 -0.58 1.90 16 9 C -0.18 -3.01 9.97 -39.79 -0.40 -3.41 16 10 C -0.06 -1.02 9.96 -39.91 -0.40 -1.42 16 11 C -0.19 -3.62 9.59 -39.95 -0.38 -4.01 16 12 C 0.05 1.07 5.08 -104.62 -0.53 0.54 16 13 C 0.04 1.07 4.52 -29.03 -0.13 0.94 16 14 C -0.50 -13.46 8.64 -34.44 -0.30 -13.76 16 15 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -25.17 13.29 55.43 0.74 -24.44 16 18 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 28 H 0.10 1.98 5.70 -51.93 -0.30 1.69 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 31 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.12 2.22 8.00 -52.49 -0.42 1.80 16 33 H 0.04 0.98 5.74 -51.93 -0.30 0.68 16 34 H 0.03 0.78 7.97 -51.93 -0.41 0.37 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 297.19 15.07 4.48 4.48 Total: -1.00 -29.98 297.19 -7.72 -37.71 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -4.77 Total: -0.16 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -3.36 Total: -20.69 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.95 Total: -37.36 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.98 -7.72 -37.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261180986.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.073 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds