Wall clock time and date at job start Mon Mar 30 2020 06:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46577 * 2 1 4 4 N 1.39870 * 125.45962 * 270.03496 * 3 2 1 5 5 C 1.30243 * 110.09104 * 179.97438 * 4 3 2 6 6 C 1.50705 * 126.10583 * 180.02562 * 5 4 3 7 7 C 1.45929 * 107.78997 * 359.76124 * 5 4 3 8 8 C 1.37052 * 125.45903 * 90.00141 * 3 2 1 9 9 C 1.39238 * 133.85599 * 0.05441 * 8 3 2 10 10 C 1.36632 * 119.85204 * 179.97438 * 9 8 3 11 11 C 1.38926 * 120.81297 * 359.97438 * 10 9 8 12 12 C 1.36500 * 120.62641 * 0.02562 * 11 10 9 13 13 C 1.50704 * 120.17792 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47007 * 258.52964 * 13 12 11 15 15 H 1.07995 * 120.00185 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99702 * 179.72533 * 14 13 12 17 17 N 1.31513 * 120.00359 * 0.27645 * 16 14 13 18 18 Si 1.86805 * 119.99628 * 180.27446 * 16 14 13 19 19 H 1.48495 * 109.47290 * 60.00272 * 18 16 14 20 20 H 1.48502 * 109.46942 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47091 * 299.99885 * 18 16 14 22 22 H 1.09003 * 109.46762 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47071 * 299.99665 * 1 2 3 24 24 H 1.08996 * 109.47147 * 60.00511 * 1 2 3 25 25 H 1.08991 * 109.47216 * 240.00241 * 2 1 3 26 26 H 1.08996 * 109.47147 * 119.99489 * 2 1 3 27 27 H 1.08992 * 109.47516 * 95.76235 * 6 5 4 28 28 H 1.08998 * 109.46907 * 215.77137 * 6 5 4 29 29 H 1.09001 * 109.46703 * 335.76605 * 6 5 4 30 30 H 1.08003 * 120.07589 * 0.02562 * 9 8 3 31 31 H 1.07992 * 119.59268 * 179.97438 * 10 9 8 32 32 H 1.07999 * 119.68213 * 180.02562 * 11 10 9 33 33 H 1.08998 * 109.47262 * 138.52685 * 13 12 11 34 34 H 1.09006 * 109.47007 * 18.53076 * 13 12 11 35 35 H 0.97003 * 120.00009 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2880 2.1466 -1.1393 5 6 2.7062 3.3307 -0.7941 6 6 3.0978 4.4428 -1.7328 7 6 2.7217 3.3906 0.6639 8 6 2.2832 2.1309 1.1163 9 6 2.1981 1.8872 2.4846 10 6 2.5444 2.8661 3.3726 11 6 2.9828 4.1073 2.9283 12 6 3.0763 4.3746 1.5930 13 6 3.5538 5.7243 1.1223 14 6 2.3706 6.5558 0.6982 15 1 1.3728 6.1476 0.7626 16 6 2.5616 7.8395 0.2327 17 7 3.7767 8.3364 0.1537 18 14 1.0943 8.8728 -0.2858 19 1 0.1758 9.0428 0.8685 20 1 1.5643 10.2049 -0.7441 21 1 0.3766 8.1926 -1.3936 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.8933 -0.5137 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 2.2496 5.1117 -1.8776 28 1 3.9320 5.0005 -1.3072 29 1 3.3952 4.0202 -2.6925 30 1 1.8599 0.9262 2.8432 31 1 2.4764 2.6727 4.4329 32 1 3.2523 4.8677 3.6463 33 1 4.2296 5.5961 0.2768 34 1 4.0791 6.2274 1.9342 35 1 3.9109 9.2397 -0.1734 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261180986.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:27 Heat of formation + Delta-G solvation = 54.069432 kcal Electronic energy + Delta-G solvation = -17378.795258 eV Core-core repulsion = 14762.771494 eV Total energy + Delta-G solvation = -2616.023763 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -42.16845 -38.35753 -36.02626 -35.10855 -33.06858 -31.54050 -30.51255 -29.10103 -27.94469 -25.23876 -24.13424 -22.97988 -22.29440 -19.95101 -18.45693 -17.80508 -17.51092 -16.48556 -16.25234 -16.05890 -15.28864 -15.16408 -14.50004 -14.37877 -14.04809 -13.96252 -13.53173 -13.39172 -13.10286 -12.98805 -12.82167 -12.69739 -12.42641 -12.27280 -12.25275 -11.98559 -11.57337 -11.50782 -11.15488 -10.51725 -10.47967 -9.43774 -8.57038 -8.11451 -6.22778 0.15658 0.71486 1.42355 1.42840 1.51034 1.56055 1.58493 2.43603 3.01187 3.18706 3.52191 3.75340 3.86930 4.13428 4.15633 4.25486 4.37304 4.42404 4.59363 4.69155 4.78415 4.81295 4.82821 4.87528 5.03966 5.11904 5.19843 5.27419 5.40695 5.45586 5.62125 5.68515 5.84583 6.04748 6.09047 6.27076 6.32934 6.77614 6.86072 7.43453 8.96066 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025435 B = 0.007338 C = 0.006578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.569934 B = 3814.899487 C = 4255.300648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.131 3.869 3 N -0.413 5.413 4 N -0.289 5.289 5 C 0.102 3.898 6 C -0.062 4.062 7 C -0.204 4.204 8 C 0.118 3.882 9 C -0.164 4.164 10 C -0.054 4.054 11 C -0.192 4.192 12 C 0.012 3.988 13 C 0.055 3.945 14 C -0.508 4.508 15 H 0.043 0.957 16 C 0.018 3.982 17 N -0.924 5.924 18 Si 0.949 3.051 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.271 1.271 22 H 0.106 0.894 23 H 0.051 0.949 24 H 0.041 0.959 25 H 0.098 0.902 26 H 0.113 0.887 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.155 0.845 31 H 0.163 0.837 32 H 0.122 0.878 33 H 0.020 0.980 34 H 0.006 0.994 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.238 -15.518 2.642 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.012 3.988 3 N -0.203 5.203 4 N -0.103 5.103 5 C -0.075 4.075 6 C -0.120 4.120 7 C -0.211 4.211 8 C 0.003 3.997 9 C -0.186 4.186 10 C -0.075 4.075 11 C -0.212 4.212 12 C 0.010 3.990 13 C 0.018 3.982 14 C -0.546 4.546 15 H 0.061 0.939 16 C -0.181 4.181 17 N -0.564 5.564 18 Si 0.774 3.226 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.196 1.196 22 H 0.124 0.876 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.116 0.884 26 H 0.131 0.869 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.172 0.828 31 H 0.180 0.820 32 H 0.140 0.860 33 H 0.038 0.962 34 H 0.024 0.976 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.483 -16.344 1.587 17.021 hybrid contribution -0.353 1.583 0.224 1.637 sum -4.836 -14.761 1.811 15.638 Atomic orbital electron populations 1.22171 0.94203 1.04094 1.01681 1.21862 0.95383 0.76196 1.05374 1.48540 1.58580 1.12945 1.00189 1.76356 1.19667 1.04438 1.09876 1.23719 0.97125 0.93606 0.93005 1.20219 1.02447 0.92974 0.96374 1.19894 1.12305 0.95772 0.93175 1.19173 0.98567 0.91107 0.90832 1.19996 1.08926 1.02152 0.87519 1.21019 0.94353 0.91298 1.00783 1.20769 1.07093 0.98902 0.94390 1.19827 0.91839 0.94304 0.93061 1.18220 0.95916 0.88299 0.95737 1.21027 0.92579 0.98274 1.42703 0.93877 1.25644 0.98024 0.98686 0.95749 1.70040 1.21984 1.16798 1.47531 0.85752 0.79917 0.78077 0.78855 1.19876 1.20532 1.19601 0.87550 0.92968 0.93970 0.88394 0.86881 0.90883 0.90657 0.89752 0.82767 0.81963 0.85983 0.96187 0.97615 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 10.24 71.98 0.74 -2.42 16 2 C 0.13 2.87 7.09 86.38 0.61 3.48 16 3 N -0.41 -13.94 3.65 -339.65 -1.24 -15.18 16 4 N -0.29 -11.38 12.40 -43.69 -0.54 -11.92 16 5 C 0.10 4.35 7.43 44.79 0.33 4.69 16 6 C -0.06 -2.51 9.46 71.24 0.67 -1.84 16 7 C -0.20 -8.93 6.13 -20.24 -0.12 -9.05 16 8 C 0.12 4.31 6.87 39.21 0.27 4.58 16 9 C -0.16 -4.81 9.97 22.13 0.22 -4.59 16 10 C -0.05 -1.61 9.96 22.06 0.22 -1.39 16 11 C -0.19 -7.39 9.59 22.03 0.21 -7.18 16 12 C 0.01 0.55 5.08 -19.87 -0.10 0.45 16 13 C 0.05 2.89 4.52 29.10 0.13 3.02 16 14 C -0.51 -28.30 8.64 25.60 0.22 -28.08 16 15 H 0.04 2.45 7.74 -2.91 -0.02 2.43 16 16 C 0.02 0.98 5.46 84.65 0.46 1.44 16 17 N -0.92 -53.85 13.29 21.45 0.28 -53.56 16 18 Si 0.95 43.91 29.54 68.60 2.03 45.93 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 H 0.11 1.28 8.14 -2.39 -0.02 1.27 16 23 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 28 H 0.07 3.35 5.70 -2.39 -0.01 3.33 16 29 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 31 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 32 H 0.12 4.51 8.00 -2.91 -0.02 4.49 16 33 H 0.02 1.11 5.74 -2.39 -0.01 1.09 16 34 H 0.01 0.31 7.97 -2.38 -0.02 0.29 16 35 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -67.27 297.19 5.47 -61.80 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 1.08 Total: 9.83 kcal Atomic # 6 Polarization: -40.76 SS G_CDS: 3.87 Total: -36.90 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -1.50 Total: -80.67 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -67.27 5.47 -61.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261180986.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.872 kcal (2) G-P(sol) polarization free energy of solvation -67.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds