Wall clock time and date at job start Mon Mar 30 2020 06:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46508 * 109.47001 * 2 1 4 4 N 1.39869 * 125.46220 * 270.02529 * 3 2 1 5 5 C 1.30242 * 110.08512 * 179.97438 * 4 3 2 6 6 C 1.50699 * 126.11096 * 180.02562 * 5 4 3 7 7 C 1.45932 * 107.78685 * 0.02562 * 5 4 3 8 8 C 1.39941 * 134.03460 * 179.97438 * 7 5 4 9 9 C 1.36465 * 119.63669 * 180.02562 * 8 7 5 10 10 C 1.38970 * 120.63017 * 359.72600 * 9 8 7 11 11 C 1.36592 * 120.80973 * 0.55526 * 10 9 8 12 12 C 1.50703 * 120.07041 * 179.72191 * 11 10 9 13 13 C 1.50701 * 109.47064 * 264.72598 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46890 * 120.00210 * 17 15 13 20 20 H 1.48501 * 109.47062 * 240.00257 * 17 15 13 21 21 C 1.37043 * 125.45611 * 90.00476 * 3 2 1 22 22 H 1.09000 * 109.47312 * 59.99573 * 1 2 3 23 23 H 1.09001 * 109.47242 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47033 * 299.99536 * 1 2 3 25 25 H 1.08996 * 109.46727 * 240.00766 * 2 1 3 26 26 H 1.08993 * 109.47294 * 120.00038 * 2 1 3 27 27 H 1.09001 * 109.47010 * 89.97377 * 6 5 4 28 28 H 1.08995 * 109.47557 * 209.98006 * 6 5 4 29 29 H 1.09004 * 109.46519 * 329.97948 * 6 5 4 30 30 H 1.07993 * 120.18109 * 0.02562 * 8 7 5 31 31 H 1.07998 * 119.68476 * 180.02562 * 9 8 7 32 32 H 1.07999 * 119.59240 * 180.28190 * 10 9 8 33 33 H 1.09002 * 109.47152 * 144.72691 * 12 11 10 34 34 H 1.09001 * 109.46980 * 24.72791 * 12 11 10 35 35 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2883 2.1465 -1.1392 5 6 2.7065 3.3307 -0.7939 6 6 3.0985 4.4428 -1.7322 7 6 2.7278 3.3882 0.6642 8 6 3.0770 4.3743 1.5937 9 6 2.9837 4.1066 2.9286 10 6 2.5402 2.8668 3.3728 11 6 2.1991 1.8865 2.4849 12 6 1.7262 0.5458 2.9851 13 6 2.8894 -0.4111 3.0336 14 1 3.8728 -0.0814 2.7328 15 6 2.6982 -1.7073 3.4631 16 7 1.5008 -2.1086 3.8298 17 14 4.1402 -2.8932 3.5239 18 1 5.3705 -2.2007 3.0635 19 1 4.3322 -3.3678 4.9179 20 1 3.8644 -4.0537 2.6394 21 6 2.2834 2.1308 1.1163 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8932 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.2238 5.0527 -1.9582 28 1 3.8621 5.0626 -1.2624 29 1 3.4930 4.0173 -2.6550 30 1 3.4183 5.3418 1.2565 31 1 3.2526 4.8672 3.6467 32 1 2.4686 2.6745 4.4331 33 1 0.9626 0.1557 2.3121 34 1 1.3063 0.6585 3.9846 35 1 1.3663 -3.0207 4.1316 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261186640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:36 Heat of formation + Delta-G solvation = 52.079817 kcal Electronic energy + Delta-G solvation = -17579.237240 eV Core-core repulsion = 14963.127200 eV Total energy + Delta-G solvation = -2616.110040 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.19222 -38.26430 -36.43820 -34.85452 -32.77847 -31.96263 -30.56468 -28.84010 -28.09747 -25.27584 -24.01821 -22.97809 -22.46457 -19.96486 -18.50171 -17.73650 -17.53755 -16.55313 -16.21521 -16.03992 -15.56109 -14.98086 -14.49254 -14.36262 -14.14468 -13.91416 -13.47181 -13.41366 -13.21087 -12.93637 -12.90685 -12.72107 -12.46020 -12.30312 -12.22745 -11.90455 -11.60262 -11.53737 -11.20052 -10.61607 -10.51770 -9.46173 -8.56186 -8.17073 -6.33555 0.17789 0.74287 1.34258 1.37057 1.48204 1.57486 1.63142 2.36578 3.02145 3.07875 3.58761 3.67612 3.91635 4.14596 4.18294 4.22370 4.41406 4.50068 4.59112 4.72082 4.74981 4.83988 4.88330 4.94920 5.04976 5.10410 5.12570 5.30173 5.34369 5.42373 5.69389 5.72297 5.76832 5.95329 6.11670 6.16099 6.29285 6.76894 6.85184 7.33845 8.86280 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023346 B = 0.008173 C = 0.007142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.078665 B = 3424.898954 C = 3919.755310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.118 3.882 3 N -0.405 5.405 4 N -0.290 5.290 5 C 0.085 3.915 6 C -0.063 4.063 7 C -0.201 4.201 8 C -0.057 4.057 9 C -0.153 4.153 10 C -0.099 4.099 11 C -0.094 4.094 12 C 0.054 3.946 13 C -0.519 4.519 14 H 0.041 0.959 15 C 0.019 3.981 16 N -0.918 5.918 17 Si 0.950 3.050 18 H -0.274 1.274 19 H -0.275 1.275 20 H -0.274 1.274 21 C 0.110 3.890 22 H 0.062 0.938 23 H 0.085 0.915 24 H 0.041 0.959 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.162 0.838 31 H 0.156 0.844 32 H 0.123 0.877 33 H 0.024 0.976 34 H 0.002 0.998 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.968 11.831 -7.229 14.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.002 4.002 3 N -0.193 5.193 4 N -0.105 5.105 5 C -0.091 4.091 6 C -0.121 4.121 7 C -0.208 4.208 8 C -0.077 4.077 9 C -0.172 4.172 10 C -0.119 4.119 11 C -0.098 4.098 12 C 0.018 3.982 13 C -0.557 4.557 14 H 0.059 0.941 15 C -0.180 4.180 16 N -0.558 5.558 17 Si 0.775 3.225 18 H -0.199 1.199 19 H -0.201 1.201 20 H -0.199 1.199 21 C -0.005 4.005 22 H 0.081 0.919 23 H 0.104 0.896 24 H 0.060 0.940 25 H 0.107 0.893 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.180 0.820 31 H 0.174 0.826 32 H 0.141 0.859 33 H 0.043 0.957 34 H 0.021 0.979 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.528 10.700 -8.162 13.544 hybrid contribution 0.501 -0.961 1.126 1.563 sum 2.030 9.739 -7.036 12.185 Atomic orbital electron populations 1.22041 0.94180 1.03207 1.01338 1.21960 0.95624 0.77716 1.04948 1.48315 1.57810 1.12309 1.00855 1.76323 1.19222 1.04989 1.09931 1.24233 0.98153 0.94341 0.92410 1.20357 1.03212 0.92367 0.96206 1.20204 1.11503 0.95330 0.93806 1.20562 0.97516 0.98228 0.91385 1.20935 1.03113 0.96867 0.96269 1.20840 0.98572 0.93326 0.99187 1.19366 1.02671 0.98078 0.89685 1.18232 0.95942 0.88729 0.95331 1.21192 0.94544 0.95898 1.44073 0.94097 1.25687 0.98055 0.99620 0.94684 1.70050 1.22694 1.18407 1.44626 0.85622 0.79703 0.78966 0.78172 1.19853 1.20059 1.19948 1.19000 0.99659 0.92393 0.89438 0.91858 0.89623 0.94013 0.89260 0.87965 0.88538 0.87979 0.89987 0.82001 0.82607 0.85859 0.95745 0.97932 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.48 9.76 71.98 0.70 -4.78 16 2 C 0.12 4.90 6.33 86.38 0.55 5.45 16 3 N -0.41 -17.45 3.65 -339.64 -1.24 -18.69 16 4 N -0.29 -11.25 12.40 -43.69 -0.54 -11.79 16 5 C 0.09 2.80 7.43 44.79 0.33 3.13 16 6 C -0.06 -1.24 10.48 71.24 0.75 -0.50 16 7 C -0.20 -7.31 6.33 -20.24 -0.13 -7.44 16 8 C -0.06 -1.67 10.07 22.27 0.22 -1.44 16 9 C -0.15 -4.64 9.97 22.03 0.22 -4.42 16 10 C -0.10 -3.85 9.59 22.06 0.21 -3.64 16 11 C -0.09 -4.34 5.05 -20.00 -0.10 -4.45 16 12 C 0.05 2.86 4.41 29.10 0.13 2.99 16 13 C -0.52 -29.02 7.57 25.60 0.19 -28.82 16 14 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 15 C 0.02 1.05 5.46 84.66 0.46 1.51 16 16 N -0.92 -52.86 13.29 21.45 0.28 -52.58 16 17 Si 0.95 43.67 29.54 68.60 2.03 45.70 16 18 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 C 0.11 4.83 6.79 39.21 0.27 5.10 16 22 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 24 H 0.04 1.68 7.06 -2.38 -0.02 1.66 16 25 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 26 H 0.10 4.95 4.59 -2.39 -0.01 4.94 16 27 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 31 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 32 H 0.12 4.62 8.05 -2.91 -0.02 4.59 16 33 H 0.02 1.32 4.50 -2.39 -0.01 1.31 16 34 H 0.00 0.13 8.04 -2.39 -0.02 0.11 16 35 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -67.11 292.67 5.42 -61.69 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 1.08 Total: 12.97 kcal Atomic # 6 Polarization: -41.11 SS G_CDS: 3.80 Total: -37.30 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -1.50 Total: -83.06 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -67.11 5.42 -61.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261186640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.768 kcal (2) G-P(sol) polarization free energy of solvation -67.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds