Wall clock time and date at job start Mon Mar 30 2020 06:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 C 1.33997 * 125.01931 * 84.72059 * 4 2 1 6 6 C 1.38252 * 107.90285 * 179.87703 * 5 4 2 7 7 C 1.41125 * 134.80921 * 180.02562 * 6 5 4 8 8 C 1.35651 * 119.53537 * 180.32421 * 7 6 5 9 9 C 1.50708 * 119.13905 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47074 * 270.02085 * 9 8 7 11 11 H 1.08001 * 120.00297 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00274 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99388 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00401 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46705 * 90.00158 * 14 12 10 16 16 H 1.48498 * 109.47231 * 210.00068 * 14 12 10 17 17 H 1.48503 * 109.47253 * 330.00641 * 14 12 10 18 18 C 1.39684 * 121.72471 * 0.04146 * 8 7 6 19 19 C 1.35642 * 121.81664 * 359.97438 * 18 8 7 20 20 C 1.41149 * 119.59491 * 0.02562 * 19 18 8 21 21 N 1.32064 * 134.68325 * 179.97438 * 20 19 18 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.07997 * 126.04449 * 0.02833 * 5 4 2 30 30 H 1.07999 * 120.23402 * 0.31727 * 7 6 5 31 31 H 1.08998 * 109.46588 * 30.02057 * 9 8 7 32 32 H 1.08996 * 109.47104 * 150.02198 * 9 8 7 33 33 H 0.97005 * 119.99757 * 180.02562 * 13 12 10 34 34 H 1.07996 * 119.09264 * 179.97438 * 18 8 7 35 35 H 1.07994 * 120.19557 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1794 -0.1237 -2.3995 6 6 2.6578 -1.0905 -3.2642 7 6 3.0170 -1.1145 -4.6288 8 6 3.4582 -2.2710 -5.1838 9 6 3.8399 -2.2864 -6.6417 10 6 2.6324 -2.6342 -7.4735 11 1 1.6833 -2.8246 -6.9945 12 6 2.7388 -2.7083 -8.8461 13 7 3.8944 -2.4760 -9.4294 14 14 1.2422 -3.1402 -9.8771 15 1 0.5216 -1.8961 -10.2488 16 1 1.6767 -3.8473 -11.1085 17 1 0.3385 -4.0203 -9.0935 18 6 3.5677 -3.4480 -4.4397 19 6 3.2393 -3.4957 -3.1245 20 6 2.7725 -2.3300 -2.4798 21 7 2.3800 -2.0415 -1.2523 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.9744 0.9069 -2.6490 30 1 2.9411 -0.2186 -5.2269 31 1 4.2092 -1.3025 -6.9309 32 1 4.6200 -3.0298 -6.8052 33 1 3.9692 -2.5278 -10.3952 34 1 3.9235 -4.3448 -4.9248 35 1 3.3345 -4.4199 -2.5740 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261194615.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:06 Heat of formation + Delta-G solvation = 79.559170 kcal Electronic energy + Delta-G solvation = -16659.401247 eV Core-core repulsion = 14044.482802 eV Total energy + Delta-G solvation = -2614.918445 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.92109 -37.49843 -35.17669 -32.93669 -31.48085 -29.97762 -29.04350 -27.67044 -26.55641 -24.21973 -22.57867 -21.18182 -20.18886 -19.67868 -17.02110 -16.30628 -16.22091 -15.23752 -14.85149 -14.45406 -14.13890 -14.00359 -13.35404 -13.12509 -12.78675 -12.60749 -12.38733 -12.31286 -11.82906 -11.58484 -11.41964 -11.24263 -10.91076 -10.71635 -10.56409 -10.41807 -9.88508 -9.76736 -9.38818 -9.19280 -8.36666 -8.00387 -6.86908 -5.97448 -4.01459 1.15723 2.50263 2.52380 2.96833 3.33918 3.40155 3.44965 4.23690 4.43859 4.56699 4.63308 4.73873 4.74266 5.00472 5.13012 5.26249 5.33691 5.36145 5.46594 5.58251 5.69806 5.80837 5.83450 5.95271 6.15074 6.24915 6.54313 6.72000 7.07665 7.19733 7.24357 7.30023 7.55434 7.70141 7.96372 7.98554 8.09968 8.40803 9.04382 9.62095 11.11376 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.035056 B = 0.004820 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.529243 B = 5807.369965 C = 6034.485835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.148 3.852 3 C -0.165 4.165 4 N -0.327 5.327 5 C 0.053 3.947 6 C -0.185 4.185 7 C -0.073 4.073 8 C -0.071 4.071 9 C 0.052 3.948 10 C -0.509 4.509 11 H 0.057 0.943 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.051 4.051 19 C -0.128 4.128 20 C 0.096 3.904 21 N -0.323 5.323 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.103 0.897 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.175 0.825 30 H 0.118 0.882 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.261 0.739 34 H 0.124 0.876 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.045 6.887 17.365 19.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.047 3.953 3 C -0.224 4.224 4 N -0.104 5.104 5 C -0.101 4.101 6 C -0.195 4.195 7 C -0.093 4.093 8 C -0.073 4.073 9 C 0.015 3.985 10 C -0.547 4.547 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.535 5.535 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.073 4.073 19 C -0.149 4.149 20 C -0.057 4.057 21 N -0.150 5.150 22 H 0.083 0.917 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.121 0.879 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.192 0.808 30 H 0.136 0.864 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.142 0.858 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.208 6.491 18.555 20.103 hybrid contribution -0.772 0.147 -1.465 1.663 sum -4.980 6.638 17.090 18.998 Atomic orbital electron populations 1.22239 0.93428 1.03516 1.03084 1.21325 0.95014 0.92820 0.86182 1.22217 1.02500 0.93927 1.03708 1.48606 1.46083 1.07694 1.07970 1.22333 1.02990 0.99062 0.85694 1.19703 1.10682 0.92950 0.96116 1.20048 0.99856 0.98685 0.90712 1.20050 0.97253 0.91717 0.98235 1.18320 0.96888 0.98184 0.85129 1.21128 0.95545 1.47104 0.90955 0.92503 1.25005 0.95908 0.95459 0.97977 1.69962 1.23779 1.49761 1.09983 0.86574 0.83044 0.78557 0.79755 1.20687 1.21226 1.19830 1.20797 0.95678 0.98338 0.92511 1.19769 1.05576 0.94935 0.94658 1.20912 0.98731 0.95316 0.90710 1.77546 1.27208 0.91231 1.19062 0.91698 0.90495 0.91468 0.87873 0.91276 0.90004 0.91327 0.80817 0.86382 0.95482 0.95436 0.92945 0.85788 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.52 37.16 0.35 -1.01 16 2 C 0.15 1.43 3.87 -67.94 -0.26 1.17 16 3 C -0.17 -1.14 8.81 37.15 0.33 -0.82 16 4 N -0.33 -4.73 3.47 -54.33 -0.19 -4.92 16 5 C 0.05 0.79 10.61 -16.60 -0.18 0.61 16 6 C -0.19 -3.47 6.33 -105.19 -0.67 -4.14 16 7 C -0.07 -1.49 9.66 -39.41 -0.38 -1.87 16 8 C -0.07 -1.58 5.03 -105.00 -0.53 -2.11 16 9 C 0.05 1.33 5.05 -29.03 -0.15 1.19 16 10 C -0.51 -14.33 9.09 -34.44 -0.31 -14.64 16 11 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 14 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 C -0.05 -1.02 9.51 -39.97 -0.38 -1.40 16 19 C -0.13 -2.41 10.08 -39.41 -0.40 -2.81 16 20 C 0.10 1.86 7.49 -83.06 -0.62 1.24 16 21 N -0.32 -5.84 12.54 33.25 0.42 -5.43 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.07 0.45 7.05 -51.93 -0.37 0.08 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.17 1.91 7.14 -52.49 -0.37 1.54 16 30 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 31 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 32 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 35 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 300.07 15.07 4.52 4.52 Total: -1.00 -32.54 300.07 -7.75 -40.29 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -4.92 Total: -2.26 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -3.29 Total: -23.06 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.96 Total: -36.14 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.54 -7.75 -40.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261194615.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.848 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds