Wall clock time and date at job start Mon Mar 30 2020 06:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 C 1.33997 * 125.01931 * 84.72059 * 4 2 1 6 6 C 1.38252 * 107.90285 * 179.87703 * 5 4 2 7 7 C 1.41125 * 134.80921 * 180.02562 * 6 5 4 8 8 C 1.35651 * 119.53537 * 180.32421 * 7 6 5 9 9 C 1.50708 * 119.13905 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47074 * 270.02085 * 9 8 7 11 11 H 1.08001 * 120.00297 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00274 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99388 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00401 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46705 * 90.00158 * 14 12 10 16 16 H 1.48498 * 109.47231 * 210.00068 * 14 12 10 17 17 H 1.48503 * 109.47253 * 330.00641 * 14 12 10 18 18 C 1.39684 * 121.72471 * 0.04146 * 8 7 6 19 19 C 1.35642 * 121.81664 * 359.97438 * 18 8 7 20 20 C 1.41149 * 119.59491 * 0.02562 * 19 18 8 21 21 N 1.32064 * 134.68325 * 179.97438 * 20 19 18 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.07997 * 126.04449 * 0.02833 * 5 4 2 30 30 H 1.07999 * 120.23402 * 0.31727 * 7 6 5 31 31 H 1.08998 * 109.46588 * 30.02057 * 9 8 7 32 32 H 1.08996 * 109.47104 * 150.02198 * 9 8 7 33 33 H 0.97005 * 119.99757 * 180.02562 * 13 12 10 34 34 H 1.07996 * 119.09264 * 179.97438 * 18 8 7 35 35 H 1.07994 * 120.19557 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1794 -0.1237 -2.3995 6 6 2.6578 -1.0905 -3.2642 7 6 3.0170 -1.1145 -4.6288 8 6 3.4582 -2.2710 -5.1838 9 6 3.8399 -2.2864 -6.6417 10 6 2.6324 -2.6342 -7.4735 11 1 1.6833 -2.8246 -6.9945 12 6 2.7388 -2.7083 -8.8461 13 7 3.8944 -2.4760 -9.4294 14 14 1.2422 -3.1402 -9.8771 15 1 0.5216 -1.8961 -10.2488 16 1 1.6767 -3.8473 -11.1085 17 1 0.3385 -4.0203 -9.0935 18 6 3.5677 -3.4480 -4.4397 19 6 3.2393 -3.4957 -3.1245 20 6 2.7725 -2.3300 -2.4798 21 7 2.3800 -2.0415 -1.2523 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.9744 0.9069 -2.6490 30 1 2.9411 -0.2186 -5.2269 31 1 4.2092 -1.3025 -6.9309 32 1 4.6200 -3.0298 -6.8052 33 1 3.9692 -2.5278 -10.3952 34 1 3.9235 -4.3448 -4.9248 35 1 3.3345 -4.4199 -2.5740 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261194615.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:04 Heat of formation + Delta-G solvation = 60.859858 kcal Electronic energy + Delta-G solvation = -16660.212110 eV Core-core repulsion = 14044.482802 eV Total energy + Delta-G solvation = -2615.729309 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.22139 -38.88794 -36.30911 -34.90370 -32.98549 -31.59139 -30.38091 -28.49220 -28.06823 -25.74450 -24.30858 -22.39367 -21.73619 -20.84136 -18.45669 -18.14725 -17.60593 -16.68060 -16.29297 -15.76145 -15.48321 -15.28733 -14.68893 -14.42704 -14.07073 -13.97541 -13.45476 -13.36430 -13.12243 -13.09861 -12.66253 -12.59419 -12.47540 -12.24374 -12.12813 -11.98342 -11.57553 -11.41798 -11.08558 -10.97986 -10.55297 -9.41206 -8.43504 -8.08073 -6.27076 -0.21924 0.98823 1.42009 1.43089 1.45884 1.54232 1.56696 2.43741 3.04365 3.15600 3.25439 3.69028 3.84197 3.92437 4.07032 4.19646 4.32935 4.43959 4.61135 4.63326 4.67726 4.75355 4.80290 4.83913 4.99445 5.16809 5.20051 5.23510 5.41526 5.46250 5.59715 5.64672 5.81803 6.02616 6.08733 6.18804 6.28652 6.72824 6.85767 7.41063 8.94445 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.035056 B = 0.004820 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.529243 B = 5807.369965 C = 6034.485835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 C -0.160 4.160 4 N -0.313 5.313 5 C 0.085 3.915 6 C -0.221 4.221 7 C -0.061 4.061 8 C -0.106 4.106 9 C 0.063 3.937 10 C -0.525 4.525 11 H 0.052 0.948 12 C 0.006 3.994 13 N -0.931 5.931 14 Si 0.962 3.038 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.268 1.268 18 C -0.067 4.067 19 C -0.123 4.123 20 C 0.074 3.926 21 N -0.346 5.346 22 H 0.066 0.934 23 H 0.110 0.890 24 H 0.045 0.955 25 H 0.107 0.893 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.060 0.940 29 H 0.220 0.780 30 H 0.121 0.879 31 H 0.004 0.996 32 H 0.003 0.997 33 H 0.265 0.735 34 H 0.125 0.875 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.985 8.573 19.262 21.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 C -0.218 4.218 4 N -0.088 5.088 5 C -0.072 4.072 6 C -0.231 4.231 7 C -0.082 4.082 8 C -0.107 4.107 9 C 0.026 3.974 10 C -0.563 4.563 11 H 0.070 0.930 12 C -0.192 4.192 13 N -0.571 5.571 14 Si 0.787 3.213 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.193 1.193 18 C -0.089 4.089 19 C -0.144 4.144 20 C -0.077 4.077 21 N -0.174 5.174 22 H 0.085 0.915 23 H 0.129 0.871 24 H 0.064 0.936 25 H 0.125 0.875 26 H 0.097 0.903 27 H 0.130 0.870 28 H 0.079 0.921 29 H 0.236 0.764 30 H 0.139 0.861 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.073 0.927 34 H 0.143 0.857 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.153 8.170 20.493 22.903 hybrid contribution -0.214 -0.222 -1.830 1.856 sum -6.367 7.948 18.662 21.260 Atomic orbital electron populations 1.22234 0.91968 1.02670 1.04866 1.21901 0.96108 0.94145 0.84311 1.22250 1.02010 0.91804 1.05756 1.49168 1.43622 1.06697 1.09303 1.22952 0.99428 1.00051 0.84748 1.19863 1.13115 0.94285 0.95802 1.20081 0.98333 0.97956 0.91782 1.19763 1.00785 0.93679 0.96514 1.18048 0.95585 0.95860 0.87880 1.21424 0.96008 1.47150 0.91751 0.93020 1.25882 0.98971 0.95164 0.99220 1.70083 1.25917 1.50623 1.10456 0.85489 0.79260 0.78610 0.77951 1.19644 1.20510 1.19301 1.20719 0.97147 0.97793 0.93224 1.19934 1.04436 0.95936 0.94067 1.21115 0.99365 0.95795 0.91424 1.77499 1.28083 0.93425 1.18431 0.91541 0.87117 0.93610 0.87488 0.90299 0.86963 0.92111 0.76356 0.86114 0.97770 0.97833 0.92654 0.85700 0.84297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.52 71.98 0.69 -1.37 16 2 C 0.13 2.11 3.87 44.99 0.17 2.29 16 3 C -0.16 -1.47 8.81 71.98 0.63 -0.84 16 4 N -0.31 -8.20 3.47 -325.80 -1.13 -9.33 16 5 C 0.08 2.27 10.61 84.37 0.89 3.17 16 6 C -0.22 -8.10 6.33 -20.23 -0.13 -8.23 16 7 C -0.06 -2.55 9.66 22.38 0.22 -2.33 16 8 C -0.11 -4.93 5.03 -20.11 -0.10 -5.03 16 9 C 0.06 3.46 5.05 29.10 0.15 3.61 16 10 C -0.53 -30.55 9.09 25.60 0.23 -30.32 16 11 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 12 C 0.01 0.32 5.46 84.65 0.46 0.78 16 13 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 14 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 15 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 C -0.07 -2.79 9.51 22.02 0.21 -2.58 16 19 C -0.12 -4.67 10.08 22.38 0.23 -4.45 16 20 C 0.07 2.85 7.49 42.16 0.32 3.17 16 21 N -0.35 -12.05 12.54 -48.71 -0.61 -12.66 16 22 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.11 0.71 8.14 -2.39 -0.02 0.70 16 24 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 25 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.08 0.61 7.05 -2.39 -0.02 0.59 16 27 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.22 3.75 7.14 -2.91 -0.02 3.73 16 30 H 0.12 4.78 8.06 -2.91 -0.02 4.75 16 31 H 0.00 0.23 8.06 -2.39 -0.02 0.21 16 32 H 0.00 0.19 8.07 -2.39 -0.02 0.17 16 33 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 34 H 0.13 5.01 8.06 -2.91 -0.02 4.98 16 35 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -72.77 300.07 5.60 -67.16 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 1.06 Total: 6.35 kcal Atomic # 6 Polarization: -46.11 SS G_CDS: 3.97 Total: -42.14 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -1.46 Total: -78.26 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -72.77 5.60 -67.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261194615.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.023 kcal (2) G-P(sol) polarization free energy of solvation -72.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds