Wall clock time and date at job start Mon Mar 30 2020 06:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46506 * 109.47289 * 120.00172 * 2 1 3 5 5 C 1.33982 * 125.02046 * 274.72399 * 4 2 1 6 6 C 1.38250 * 107.90812 * 179.87448 * 5 4 2 7 7 C 1.47131 * 106.41530 * 0.37281 * 6 5 4 8 8 C 1.41155 * 118.56022 * 179.75404 * 7 6 5 9 9 C 1.35632 * 119.59388 * 359.97438 * 8 7 6 10 10 C 1.39681 * 121.81948 * 0.02562 * 9 8 7 11 11 C 1.35659 * 121.72674 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.23474 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47031 * 264.99916 * 12 11 10 14 14 H 1.08007 * 120.00215 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99833 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99800 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00127 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47057 * 89.99821 * 17 15 13 19 19 H 1.48501 * 109.47192 * 209.99774 * 17 15 13 20 20 H 1.48497 * 109.47075 * 329.99756 * 17 15 13 21 21 N 1.32064 * 106.76197 * 359.77031 * 7 6 5 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 1.08004 * 126.04933 * 0.02562 * 5 4 2 30 30 H 1.08000 * 120.20012 * 180.02562 * 8 7 6 31 31 H 1.08002 * 119.09327 * 179.97438 * 9 8 7 32 32 H 1.08005 * 119.14195 * 179.97438 * 10 9 8 33 33 H 1.08999 * 109.47464 * 24.99708 * 12 11 10 34 34 H 1.09001 * 109.47333 * 145.00053 * 12 11 10 35 35 H 0.96995 * 119.99851 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1895 -0.1212 2.3968 6 6 2.6588 -1.0903 3.2640 7 6 2.7740 -2.3296 2.4794 8 6 3.2420 -3.4951 3.1237 9 6 3.5723 -3.4470 4.4383 10 6 3.4628 -2.2701 5.1826 11 6 3.0205 -1.1138 4.6279 12 6 2.9160 0.1368 5.4622 13 6 1.5104 0.2737 5.9882 14 1 0.7670 -0.4702 5.7425 15 6 1.1735 1.3488 6.7831 16 7 -0.0533 1.4685 7.2418 17 14 2.4591 2.6358 7.2075 18 1 2.4440 3.7081 6.1802 19 1 2.1538 3.2206 8.5379 20 1 3.8016 2.0020 7.2417 21 7 2.3807 -2.0414 1.2521 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.9930 0.9116 2.6442 30 1 3.3373 -4.4193 2.5730 31 1 3.9292 -4.3436 4.9233 32 1 3.7374 -2.2808 6.2271 33 1 3.6124 0.0749 6.2984 34 1 3.1606 1.0041 4.8491 35 1 -0.2904 2.2250 7.8007 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261197190.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:14 Heat of formation + Delta-G solvation = 63.133889 kcal Electronic energy + Delta-G solvation = -17166.742887 eV Core-core repulsion = 14551.112188 eV Total energy + Delta-G solvation = -2615.630699 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.24305 -38.75756 -36.13078 -35.23930 -33.59645 -31.02941 -30.29007 -29.00545 -28.22148 -25.59140 -24.20342 -22.86439 -21.41990 -20.32151 -18.94239 -18.39795 -17.48754 -16.58198 -16.36200 -16.10993 -15.46002 -15.29824 -14.88149 -14.22455 -14.17228 -13.89781 -13.62864 -13.28571 -13.21095 -13.02697 -12.73596 -12.67840 -12.47708 -12.20782 -12.04509 -11.97240 -11.81205 -11.61451 -11.00532 -10.84865 -10.75176 -9.41101 -8.37566 -8.26116 -6.31839 -0.19323 1.00136 1.38110 1.41673 1.43384 1.53452 1.57424 2.37808 3.03634 3.07484 3.27151 3.68075 3.82988 3.91374 4.03339 4.18904 4.32649 4.48321 4.55699 4.58842 4.64543 4.71547 4.75788 4.81915 4.93792 5.06571 5.13492 5.14896 5.18094 5.37760 5.58590 5.62956 5.71687 6.01514 6.05811 6.13597 6.30899 6.71982 6.75522 7.31118 8.89909 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017815 B = 0.008374 C = 0.006368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.346945 B = 3342.866692 C = 4395.639613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.136 3.864 3 C -0.162 4.162 4 N -0.315 5.315 5 C 0.092 3.908 6 C -0.226 4.226 7 C 0.084 3.916 8 C -0.146 4.146 9 C -0.055 4.055 10 C -0.196 4.196 11 C 0.018 3.982 12 C 0.022 3.978 13 C -0.512 4.512 14 H 0.022 0.978 15 C 0.011 3.989 16 N -0.949 5.949 17 Si 0.948 3.052 18 H -0.261 1.261 19 H -0.285 1.285 20 H -0.246 1.246 21 N -0.347 5.347 22 H 0.114 0.886 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.117 0.883 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.116 0.884 29 H 0.194 0.806 30 H 0.142 0.858 31 H 0.157 0.843 32 H 0.123 0.877 33 H 0.035 0.965 34 H 0.032 0.968 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.555 -0.859 -13.938 15.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 C -0.220 4.220 4 N -0.090 5.090 5 C -0.065 4.065 6 C -0.235 4.235 7 C -0.068 4.068 8 C -0.167 4.167 9 C -0.077 4.077 10 C -0.215 4.215 11 C 0.016 3.984 12 C -0.015 4.015 13 C -0.550 4.550 14 H 0.041 0.959 15 C -0.186 4.186 16 N -0.589 5.589 17 Si 0.771 3.229 18 H -0.185 1.185 19 H -0.211 1.211 20 H -0.169 1.169 21 N -0.175 5.175 22 H 0.133 0.867 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.135 0.865 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.135 0.865 29 H 0.210 0.790 30 H 0.160 0.840 31 H 0.174 0.826 32 H 0.141 0.859 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.181 -1.160 -15.238 16.485 hybrid contribution -0.083 0.830 1.438 1.662 sum 6.097 -0.331 -13.801 15.091 Atomic orbital electron populations 1.22240 0.92443 1.02718 1.04459 1.21889 0.95842 0.94084 0.84531 1.22259 1.02195 0.92198 1.05364 1.49127 1.43948 1.06872 1.09037 1.22794 0.98450 0.99879 0.85415 1.19749 1.13812 0.94228 0.95729 1.21356 0.98610 0.95812 0.91055 1.20004 1.06228 0.95335 0.95122 1.20904 0.95749 0.98044 0.93039 1.20597 1.07454 0.92895 1.00592 1.19445 0.91567 0.96645 0.90772 1.18670 0.95864 0.92248 0.94763 1.21009 0.94924 1.08406 1.30632 0.95917 1.25936 0.97442 1.00171 0.95041 1.70064 1.20720 1.31954 1.36210 0.85690 0.80234 0.79027 0.77976 1.18531 1.21108 1.16917 1.77444 1.28260 0.92973 1.18789 0.86707 0.92859 0.93242 0.86499 0.91629 0.91662 0.86523 0.78955 0.83990 0.82561 0.85906 0.94673 0.94986 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 9.52 71.98 0.69 -2.58 16 2 C 0.14 2.99 3.88 44.99 0.17 3.17 16 3 C -0.16 -2.67 8.80 71.98 0.63 -2.04 16 4 N -0.32 -10.34 3.47 -325.79 -1.13 -11.47 16 5 C 0.09 3.38 10.41 84.37 0.88 4.26 16 6 C -0.23 -9.59 6.13 -20.23 -0.12 -9.72 16 7 C 0.08 3.36 7.49 42.16 0.32 3.67 16 8 C -0.15 -5.05 10.08 22.38 0.23 -4.82 16 9 C -0.06 -1.82 9.89 22.01 0.22 -1.61 16 10 C -0.20 -7.71 9.53 22.02 0.21 -7.50 16 11 C 0.02 0.81 5.08 -19.75 -0.10 0.71 16 12 C 0.02 1.04 4.10 29.10 0.12 1.16 16 13 C -0.51 -29.46 9.65 25.60 0.25 -29.21 16 14 H 0.02 1.49 7.98 -2.91 -0.02 1.47 16 15 C 0.01 0.63 5.47 84.66 0.46 1.10 16 16 N -0.95 -58.78 13.96 21.45 0.30 -58.49 16 17 Si 0.95 42.69 27.47 68.60 1.88 44.58 16 18 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 19 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 20 H -0.25 -10.29 6.54 99.48 0.65 -9.64 16 21 N -0.35 -13.21 12.54 -48.70 -0.61 -13.82 16 22 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 24 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.06 1.19 7.04 -2.39 -0.02 1.18 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.19 6.44 7.13 -2.91 -0.02 6.42 16 30 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 31 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 32 H 0.12 4.54 8.03 -2.91 -0.02 4.52 16 33 H 0.04 1.62 7.09 -2.39 -0.02 1.60 16 34 H 0.03 1.43 7.49 -2.39 -0.02 1.42 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -72.70 296.28 5.40 -67.30 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 1.01 Total: 15.33 kcal Atomic # 6 Polarization: -47.37 SS G_CDS: 3.95 Total: -43.42 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -1.44 Total: -83.78 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.88 Total: 44.58 kcal Total: -72.70 5.40 -67.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261197190.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.432 kcal (2) G-P(sol) polarization free energy of solvation -72.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds