Wall clock time and date at job start Mon Mar 30 2020 06:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 N 1.46499 * 109.46799 * 240.00475 * 2 1 3 5 5 N 1.39874 * 125.46409 * 59.69466 * 4 2 1 6 6 C 1.30238 * 110.09528 * 179.86815 * 5 4 2 7 7 C 1.45935 * 107.78718 * 0.38531 * 6 5 4 8 8 C 1.37053 * 125.45888 * 240.00244 * 4 2 1 9 9 C 1.39244 * 133.85434 * 359.95860 * 8 4 2 10 10 C 1.36623 * 119.85084 * 180.02562 * 9 8 4 11 11 C 1.38927 * 120.81562 * 0.02562 * 10 9 8 12 12 C 1.36495 * 120.62833 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.18350 * 180.02562 * 12 11 10 14 14 C 1.50695 * 109.47229 * 265.00258 * 13 12 11 15 15 H 1.08003 * 119.99947 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00221 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00245 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00357 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47097 * 59.99523 * 18 16 14 20 20 H 1.48501 * 109.47367 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47022 * 299.99991 * 18 16 14 22 22 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 23 23 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 25 25 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 26 26 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 27 27 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 29 29 H 1.08000 * 126.10904 * 180.11231 * 6 5 4 30 30 H 1.07998 * 120.07347 * 359.97438 * 9 8 4 31 31 H 1.08003 * 119.59566 * 180.02562 * 10 9 8 32 32 H 1.07999 * 119.68447 * 179.97438 * 11 10 9 33 33 H 1.09005 * 109.46991 * 24.99846 * 13 12 11 34 34 H 1.09000 * 109.47259 * 144.99687 * 13 12 11 35 35 H 0.96996 * 120.00725 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 7 1.7467 -0.3170 -2.5165 6 6 2.3318 -1.1363 -3.3427 7 6 3.0401 -2.1372 -2.5513 8 6 2.8095 -1.8096 -1.2010 9 6 3.3690 -2.5998 -0.2003 10 6 4.1339 -3.6811 -0.5355 11 6 4.3633 -4.0053 -1.8668 12 6 3.8277 -3.2490 -2.8690 13 6 4.0826 -3.6102 -4.3097 14 6 5.2546 -2.8165 -4.8268 15 1 5.7638 -2.1199 -4.1772 16 6 5.6763 -2.9789 -6.1294 17 7 5.0561 -3.8268 -6.9205 18 14 7.1287 -1.9946 -6.7706 19 1 8.3343 -2.3070 -5.9616 20 1 7.3800 -2.3506 -8.1902 21 1 6.8270 -0.5441 -6.6694 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6768 1.9562 0.8901 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 2.2953 -1.0868 -4.4210 30 1 3.1994 -2.3579 0.8385 31 1 4.5655 -4.2914 0.2440 32 1 4.9711 -4.8639 -2.1111 33 1 4.3039 -4.6750 -4.3837 34 1 3.1980 -3.3808 -4.9038 35 1 5.3524 -3.9408 -7.8370 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261198967.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:07 Heat of formation + Delta-G solvation = 70.031762 kcal Electronic energy + Delta-G solvation = -17098.831793 eV Core-core repulsion = 14483.500208 eV Total energy + Delta-G solvation = -2615.331585 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = -0.82 seconds Orbital eigenvalues (eV) -40.73608 -37.08197 -35.12996 -33.48037 -31.54756 -29.68755 -28.53262 -27.31604 -26.88211 -23.37930 -22.62985 -21.43457 -21.27709 -18.56610 -16.72578 -16.27504 -16.18485 -14.75269 -14.68770 -14.57376 -14.31118 -14.19107 -13.01492 -12.98597 -12.57472 -12.36269 -12.25338 -12.19338 -11.53304 -11.48334 -11.30987 -11.16723 -11.01530 -10.91523 -10.50368 -10.48016 -10.13768 -9.70152 -9.44827 -9.04751 -8.41372 -7.96176 -7.17145 -6.03457 -4.07285 1.61061 2.19511 2.78238 3.10359 3.33350 3.37380 3.41086 4.38343 4.55782 4.56216 4.94672 4.96462 5.11809 5.30718 5.32319 5.38713 5.45719 5.59514 5.66207 5.69584 5.73564 5.87624 6.07349 6.11001 6.13875 6.33388 6.51710 6.66878 6.97942 7.09277 7.19359 7.44302 7.55108 7.66897 7.83653 7.92231 8.19217 8.31490 8.97400 9.56369 11.06115 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.027786 B = 0.006288 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.452667 B = 4452.058106 C = 4889.272983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.169 3.831 3 C -0.160 4.160 4 N -0.413 5.413 5 N -0.274 5.274 6 C 0.097 3.903 7 C -0.176 4.176 8 C 0.127 3.873 9 C -0.181 4.181 10 C -0.061 4.061 11 C -0.183 4.183 12 C 0.049 3.951 13 C 0.046 3.954 14 C -0.509 4.509 15 H 0.056 0.944 16 C 0.061 3.939 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 H 0.068 0.932 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.195 0.805 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.032 0.968 34 H 0.032 0.968 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.253 5.011 13.575 15.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.067 3.933 3 C -0.218 4.218 4 N -0.203 5.203 5 N -0.085 5.085 6 C -0.101 4.101 7 C -0.184 4.184 8 C 0.013 3.987 9 C -0.203 4.203 10 C -0.082 4.082 11 C -0.202 4.202 12 C 0.046 3.954 13 C 0.009 3.991 14 C -0.547 4.547 15 H 0.074 0.926 16 C -0.141 4.141 17 N -0.532 5.532 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.110 0.890 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.212 0.788 30 H 0.128 0.872 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.072 6.089 13.645 16.531 hybrid contribution 1.382 -0.166 -0.429 1.457 sum -5.689 5.923 13.216 15.560 Atomic orbital electron populations 1.22138 0.94194 1.02635 1.02822 1.20991 0.94777 0.93349 0.84196 1.22140 1.01764 0.95142 1.02796 1.48308 1.44700 1.23402 1.03881 1.76448 1.21695 1.22933 0.87421 1.25144 0.93932 0.91246 0.99729 1.19792 1.06865 1.00643 0.91058 1.18829 0.94538 0.89384 0.95907 1.19471 1.05834 0.98663 0.96311 1.20613 0.95819 0.95238 0.96521 1.20559 1.05030 1.02906 0.91728 1.20011 0.87595 0.89065 0.98681 1.18392 0.97596 0.97645 0.85448 1.20945 1.13956 1.23392 0.96385 0.92560 1.24970 0.96920 0.95400 0.96806 1.69939 1.40828 1.35508 1.06973 0.86619 0.82915 0.80538 0.77757 1.20198 1.21233 1.20177 0.91265 0.92305 0.91351 0.88968 0.91352 0.92241 0.91266 0.78793 0.87208 0.86460 0.86100 0.95012 0.94969 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.43 37.16 0.35 -1.40 16 2 C 0.17 2.13 3.68 -67.93 -0.25 1.88 16 3 C -0.16 -1.82 9.44 37.16 0.35 -1.46 16 4 N -0.41 -7.05 3.32 -52.23 -0.17 -7.22 16 5 N -0.27 -5.10 12.22 31.87 0.39 -4.71 16 6 C 0.10 1.92 12.08 -15.15 -0.18 1.74 16 7 C -0.18 -3.69 6.14 -105.20 -0.65 -4.34 16 8 C 0.13 2.37 6.87 -84.17 -0.58 1.79 16 9 C -0.18 -2.96 9.79 -39.79 -0.39 -3.35 16 10 C -0.06 -1.01 9.96 -39.91 -0.40 -1.40 16 11 C -0.18 -3.55 9.59 -39.96 -0.38 -3.94 16 12 C 0.05 1.08 5.07 -104.63 -0.53 0.55 16 13 C 0.05 1.16 5.03 -29.04 -0.15 1.02 16 14 C -0.51 -14.00 9.09 -34.44 -0.31 -14.32 16 15 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 18 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.09 1.02 7.42 -51.93 -0.39 0.63 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.20 3.61 8.06 -52.49 -0.42 3.18 16 30 H 0.11 1.46 7.62 -52.49 -0.40 1.06 16 31 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 32 H 0.12 2.24 8.05 -52.49 -0.42 1.82 16 33 H 0.03 0.84 8.05 -51.93 -0.42 0.42 16 34 H 0.03 0.84 8.05 -51.93 -0.42 0.43 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 301.53 15.07 4.54 4.54 Total: -1.00 -30.39 301.53 -7.70 -38.09 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -4.97 Total: -0.29 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -3.21 Total: -21.64 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.95 Total: -37.10 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.39 -7.70 -38.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261198967.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.126 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.82 seconds