Wall clock time and date at job start Mon Mar 30 2020 06:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 N 1.46499 * 109.46799 * 240.00475 * 2 1 3 5 5 N 1.39874 * 125.46409 * 59.69466 * 4 2 1 6 6 C 1.30238 * 110.09528 * 179.86815 * 5 4 2 7 7 C 1.45935 * 107.78718 * 0.38531 * 6 5 4 8 8 C 1.37053 * 125.45888 * 240.00244 * 4 2 1 9 9 C 1.39244 * 133.85434 * 359.95860 * 8 4 2 10 10 C 1.36623 * 119.85084 * 180.02562 * 9 8 4 11 11 C 1.38927 * 120.81562 * 0.02562 * 10 9 8 12 12 C 1.36495 * 120.62833 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.18350 * 180.02562 * 12 11 10 14 14 C 1.50695 * 109.47229 * 265.00258 * 13 12 11 15 15 H 1.08003 * 119.99947 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00221 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00245 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00357 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47097 * 59.99523 * 18 16 14 20 20 H 1.48501 * 109.47367 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47022 * 299.99991 * 18 16 14 22 22 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 23 23 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 25 25 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 26 26 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 27 27 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 29 29 H 1.08000 * 126.10904 * 180.11231 * 6 5 4 30 30 H 1.07998 * 120.07347 * 359.97438 * 9 8 4 31 31 H 1.08003 * 119.59566 * 180.02562 * 10 9 8 32 32 H 1.07999 * 119.68447 * 179.97438 * 11 10 9 33 33 H 1.09005 * 109.46991 * 24.99846 * 13 12 11 34 34 H 1.09000 * 109.47259 * 144.99687 * 13 12 11 35 35 H 0.96996 * 120.00725 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 7 1.7467 -0.3170 -2.5165 6 6 2.3318 -1.1363 -3.3427 7 6 3.0401 -2.1372 -2.5513 8 6 2.8095 -1.8096 -1.2010 9 6 3.3690 -2.5998 -0.2003 10 6 4.1339 -3.6811 -0.5355 11 6 4.3633 -4.0053 -1.8668 12 6 3.8277 -3.2490 -2.8690 13 6 4.0826 -3.6102 -4.3097 14 6 5.2546 -2.8165 -4.8268 15 1 5.7638 -2.1199 -4.1772 16 6 5.6763 -2.9789 -6.1294 17 7 5.0561 -3.8268 -6.9205 18 14 7.1287 -1.9946 -6.7706 19 1 8.3343 -2.3070 -5.9616 20 1 7.3800 -2.3506 -8.1902 21 1 6.8270 -0.5441 -6.6694 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6768 1.9562 0.8901 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 2.2953 -1.0868 -4.4210 30 1 3.1994 -2.3579 0.8385 31 1 4.5655 -4.2914 0.2440 32 1 4.9711 -4.8639 -2.1111 33 1 4.3039 -4.6750 -4.3837 34 1 3.1980 -3.3808 -4.9038 35 1 5.3524 -3.9408 -7.8370 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261198967.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:05 Heat of formation + Delta-G solvation = 53.534346 kcal Electronic energy + Delta-G solvation = -17099.547174 eV Core-core repulsion = 14483.500208 eV Total energy + Delta-G solvation = -2616.046967 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.14631 -38.48941 -36.26782 -35.41682 -33.26879 -31.14195 -29.95320 -28.69359 -28.18295 -25.27850 -23.88068 -22.88306 -22.76456 -19.88463 -18.48247 -17.98387 -17.60025 -16.52290 -16.06482 -16.05108 -15.61217 -15.27812 -14.50485 -14.40876 -14.23049 -13.88598 -13.34151 -13.19143 -13.17638 -12.98444 -12.71740 -12.55339 -12.43265 -12.26203 -12.25116 -12.16981 -11.59518 -11.55440 -11.25542 -10.62806 -10.56790 -9.43057 -8.62782 -8.15764 -6.29574 0.15904 0.72164 1.40686 1.42649 1.50877 1.54055 1.63196 2.41370 3.02517 3.13641 3.48430 3.76124 3.95176 4.01215 4.12534 4.15173 4.26637 4.44531 4.60115 4.67726 4.70255 4.80290 4.82023 4.88702 5.04388 5.17801 5.23516 5.25289 5.33912 5.38840 5.55092 5.67558 5.77962 6.02830 6.08269 6.22004 6.32850 6.74086 6.81369 7.38126 8.91690 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.027786 B = 0.006288 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.452667 B = 4452.058106 C = 4889.272983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.154 3.846 3 C -0.155 4.155 4 N -0.405 5.405 5 N -0.273 5.273 6 C 0.070 3.930 7 C -0.204 4.204 8 C 0.117 3.883 9 C -0.163 4.163 10 C -0.055 4.055 11 C -0.188 4.188 12 C 0.012 3.988 13 C 0.058 3.942 14 C -0.521 4.521 15 H 0.048 0.952 16 C 0.010 3.990 17 N -0.927 5.927 18 Si 0.959 3.041 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.272 1.272 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.104 0.896 25 H 0.120 0.880 26 H 0.105 0.895 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.189 0.811 30 H 0.155 0.845 31 H 0.163 0.837 32 H 0.121 0.879 33 H 0.008 0.992 34 H 0.006 0.994 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.935 6.056 16.820 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 C -0.213 4.213 4 N -0.195 5.195 5 N -0.085 5.085 6 C -0.127 4.127 7 C -0.211 4.211 8 C 0.002 3.998 9 C -0.185 4.185 10 C -0.075 4.075 11 C -0.208 4.208 12 C 0.009 3.991 13 C 0.021 3.979 14 C -0.559 4.559 15 H 0.067 0.933 16 C -0.188 4.188 17 N -0.567 5.567 18 Si 0.784 3.216 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.197 1.197 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.123 0.877 25 H 0.138 0.862 26 H 0.124 0.876 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.206 0.794 30 H 0.172 0.828 31 H 0.180 0.820 32 H 0.139 0.861 33 H 0.026 0.974 34 H 0.025 0.975 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.767 7.148 16.906 19.562 hybrid contribution 1.203 -0.466 -1.303 1.834 sum -5.563 6.683 15.603 17.862 Atomic orbital electron populations 1.22106 0.92862 1.02418 1.03767 1.21564 0.95935 0.93992 0.83123 1.22115 1.00974 0.94425 1.03761 1.48765 1.43635 1.22903 1.04208 1.76365 1.21109 1.22511 0.88522 1.25122 0.95407 0.92200 0.99946 1.19961 1.07502 1.00813 0.92865 1.19157 0.95030 0.90179 0.95446 1.19999 1.03536 0.97135 0.97817 1.21006 0.95143 0.95531 0.95821 1.20739 1.04553 1.02464 0.93007 1.19751 0.90810 0.91350 0.97147 1.18085 0.95877 0.95801 0.88118 1.21195 1.14597 1.23389 0.96705 0.93321 1.25806 0.99642 0.96357 0.96994 1.70057 1.42404 1.36926 1.07329 0.85587 0.79580 0.79023 0.77394 1.19337 1.20431 1.19715 0.93026 0.93083 0.87696 0.86234 0.87625 0.93379 0.93068 0.79407 0.82769 0.81964 0.86125 0.97365 0.97523 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.43 71.98 0.68 -2.22 16 2 C 0.15 3.37 3.68 44.99 0.17 3.54 16 3 C -0.15 -3.04 9.44 71.98 0.68 -2.36 16 4 N -0.40 -13.19 3.32 -319.17 -1.06 -14.25 16 5 N -0.27 -10.28 12.22 -53.09 -0.65 -10.93 16 6 C 0.07 2.91 12.08 86.92 1.05 3.96 16 7 C -0.20 -8.75 6.14 -20.24 -0.12 -8.88 16 8 C 0.12 4.17 6.87 39.21 0.27 4.43 16 9 C -0.16 -4.71 9.79 22.13 0.22 -4.49 16 10 C -0.05 -1.62 9.96 22.06 0.22 -1.40 16 11 C -0.19 -7.26 9.59 22.03 0.21 -7.05 16 12 C 0.01 0.54 5.07 -19.87 -0.10 0.44 16 13 C 0.06 3.14 5.03 29.10 0.15 3.28 16 14 C -0.52 -29.92 9.09 25.60 0.23 -29.68 16 15 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 16 C 0.01 0.60 5.46 84.65 0.46 1.06 16 17 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 18 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 25 H 0.12 2.00 7.42 -2.39 -0.02 1.99 16 26 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.19 7.69 8.06 -2.91 -0.02 7.67 16 30 H 0.15 3.10 7.62 -2.91 -0.02 3.07 16 31 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 32 H 0.12 4.52 8.05 -2.91 -0.02 4.50 16 33 H 0.01 0.46 8.05 -2.38 -0.02 0.44 16 34 H 0.01 0.37 8.05 -2.39 -0.02 0.35 16 35 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -68.72 301.53 5.77 -62.95 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.06 Total: 10.29 kcal Atomic # 6 Polarization: -43.47 SS G_CDS: 4.11 Total: -39.36 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -1.42 Total: -80.57 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -68.72 5.77 -62.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261198967.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.485 kcal (2) G-P(sol) polarization free energy of solvation -68.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds