Wall clock time and date at job start Mon Mar 30 2020 06:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 N 1.39870 * 125.46100 * 269.69306 * 3 2 1 5 5 C 1.30248 * 110.08157 * 179.86973 * 4 3 2 6 6 C 1.50703 * 126.10601 * 180.11104 * 5 4 3 7 7 C 1.45922 * 107.78778 * 0.38575 * 5 4 3 8 8 C 1.39941 * 134.03298 * 179.77815 * 7 5 4 9 9 C 1.36468 * 119.63698 * 179.97438 * 8 7 5 10 10 C 1.50699 * 119.68773 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47168 * 269.98412 * 10 9 8 12 12 H 1.08003 * 120.00231 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00129 * 179.97438 * 11 10 9 14 14 N 1.31507 * 119.99735 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99844 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46909 * 90.00151 * 15 13 11 17 17 H 1.48502 * 109.46990 * 209.99995 * 15 13 11 18 18 H 1.48495 * 109.47505 * 330.00296 * 15 13 11 19 19 C 1.38965 * 120.63075 * 0.02562 * 9 8 7 20 20 C 1.36596 * 120.81318 * 359.97438 * 19 9 8 21 21 C 1.37040 * 125.45697 * 90.00501 * 3 2 1 22 22 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 23 23 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 24 24 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 26 26 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 27 27 H 1.08994 * 109.47155 * 270.32924 * 6 5 4 28 28 H 1.09008 * 109.47055 * 30.32692 * 6 5 4 29 29 H 1.08995 * 109.46919 * 150.32750 * 6 5 4 30 30 H 1.08000 * 120.18586 * 0.02562 * 8 7 5 31 31 H 1.09008 * 109.46940 * 29.97885 * 10 9 8 32 32 H 1.08994 * 109.47393 * 149.97999 * 10 9 8 33 33 H 0.97001 * 119.99736 * 180.02562 * 14 13 11 34 34 H 1.08001 * 119.59888 * 179.97438 * 19 9 8 35 35 H 1.07994 * 120.07478 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2946 2.1443 -1.1392 5 6 2.7088 3.3299 -0.7938 6 6 3.1035 4.4410 -1.7323 7 6 2.7288 3.3879 0.6641 8 6 3.0774 4.3742 1.5936 9 6 2.9819 4.1073 2.9286 10 6 3.3565 5.1688 3.9306 11 6 4.8208 5.0487 4.2660 12 1 5.4202 4.2802 3.8005 13 6 5.3954 5.9198 5.1672 14 7 4.6656 6.8558 5.7336 15 14 7.2102 5.7704 5.5834 16 1 8.0033 6.6073 4.6474 17 1 7.4384 6.2331 6.9759 18 1 7.6319 4.3521 5.4577 19 6 2.5426 2.8660 3.3728 20 6 2.1967 1.8873 2.4849 21 6 2.2834 2.1307 1.1163 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 4.1670 4.3652 -1.9582 28 1 2.5292 4.3584 -2.6551 29 1 2.8995 5.4031 -1.2623 30 1 3.4193 5.3415 1.2565 31 1 3.1605 6.1538 3.5068 32 1 2.7644 5.0385 4.8363 33 1 5.0700 7.4689 6.3673 34 1 2.4738 2.6727 4.4332 35 1 1.8564 0.9271 2.8433 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261199105.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:40 Heat of formation + Delta-G solvation = 67.037055 kcal Electronic energy + Delta-G solvation = -16832.606682 eV Core-core repulsion = 14217.145236 eV Total energy + Delta-G solvation = -2615.461445 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.85749 -37.12507 -34.66962 -33.16498 -31.43723 -30.29862 -29.63526 -27.61961 -26.40693 -23.56422 -22.45947 -22.29354 -20.23378 -19.24974 -16.63702 -16.32783 -16.06592 -15.02817 -14.71957 -14.40212 -14.25186 -13.68484 -13.34945 -13.12532 -12.77512 -12.55138 -12.29619 -12.17401 -12.09130 -11.58179 -11.35284 -11.21188 -10.92830 -10.72488 -10.62525 -10.48879 -10.12331 -9.62562 -9.47833 -9.15569 -8.40756 -8.05922 -7.13778 -6.02025 -4.06047 1.46570 2.18251 2.65399 2.85036 3.31443 3.37797 3.42038 4.36605 4.53808 4.55944 4.88629 4.95152 5.00290 5.15055 5.19578 5.32274 5.43459 5.61464 5.66503 5.72345 5.74612 5.93664 5.96929 6.01583 6.07425 6.22116 6.50236 6.60592 6.89145 7.10707 7.16670 7.37383 7.51963 7.66063 7.86274 7.93754 8.02862 8.35041 8.99534 9.57883 11.07198 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.030655 B = 0.005482 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.180991 B = 5106.476850 C = 5514.478068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.143 3.857 3 N -0.415 5.415 4 N -0.269 5.269 5 C 0.092 3.908 6 C -0.070 4.070 7 C -0.172 4.172 8 C -0.053 4.053 9 C -0.073 4.073 10 C 0.053 3.947 11 C -0.511 4.511 12 H 0.057 0.943 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.060 4.060 20 C -0.153 4.153 21 C 0.110 3.890 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.262 0.738 34 H 0.126 0.874 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.353 -9.834 -10.696 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.021 3.979 3 N -0.205 5.205 4 N -0.083 5.083 5 C -0.085 4.085 6 C -0.129 4.129 7 C -0.179 4.179 8 C -0.073 4.073 9 C -0.075 4.075 10 C 0.016 3.984 11 C -0.549 4.549 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.080 4.080 20 C -0.175 4.175 21 C -0.002 4.002 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.141 0.859 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.144 0.856 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.676 -10.650 -11.544 17.067 hybrid contribution 1.163 0.272 1.042 1.585 sum -5.513 -10.378 -10.502 15.761 Atomic orbital electron populations 1.22215 0.95222 1.02359 1.03078 1.21388 0.94531 0.78473 1.03479 1.48026 1.59506 1.11867 1.01058 1.76355 1.18587 1.04124 1.09209 1.23435 0.98900 0.93710 0.92505 1.20180 1.01854 0.94110 0.96745 1.19793 1.10346 0.95456 0.92333 1.20233 0.97836 0.97673 0.91602 1.20198 0.96133 0.96376 0.94752 1.18289 0.96568 0.91458 0.92057 1.21107 0.93844 1.15463 1.24529 0.92519 1.25000 0.98029 0.95263 0.95978 1.69953 1.35820 1.18309 1.29297 0.86570 0.85322 0.78422 0.77591 1.20593 1.21203 1.19860 1.20770 0.95592 0.92437 0.99232 1.19694 1.08552 1.00396 0.88864 1.18696 1.00464 0.91737 0.89340 0.92032 0.91989 0.91064 0.89558 0.89647 0.90303 0.90948 0.90006 0.85912 0.95359 0.95386 0.92882 0.85618 0.86835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 10.24 37.16 0.38 -1.33 16 2 C 0.14 1.66 7.09 -4.04 -0.03 1.63 16 3 N -0.41 -6.71 3.65 -58.70 -0.21 -6.93 16 4 N -0.27 -4.57 12.40 34.84 0.43 -4.14 16 5 C 0.09 1.53 7.43 -80.19 -0.60 0.93 16 6 C -0.07 -0.86 10.48 36.01 0.38 -0.49 16 7 C -0.17 -3.24 6.33 -105.21 -0.67 -3.91 16 8 C -0.05 -1.06 9.68 -39.58 -0.38 -1.45 16 9 C -0.07 -1.58 5.03 -104.99 -0.53 -2.11 16 10 C 0.05 1.34 5.08 -29.04 -0.15 1.20 16 11 C -0.51 -14.15 9.09 -34.44 -0.31 -14.47 16 12 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 15 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 19 C -0.06 -1.15 9.61 -39.91 -0.38 -1.53 16 20 C -0.15 -2.63 9.97 -39.79 -0.40 -3.02 16 21 C 0.11 1.98 6.87 -84.17 -0.58 1.40 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 31 H 0.03 0.75 8.07 -51.92 -0.42 0.33 16 32 H 0.03 0.74 8.08 -51.93 -0.42 0.32 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 35 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 304.06 15.07 4.58 4.58 Total: -1.00 -31.47 304.06 -7.88 -39.34 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -5.03 Total: -2.21 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -3.36 Total: -21.60 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.95 Total: -36.50 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.47 -7.88 -39.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261199105.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.378 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds